Miyakogusa Predicted Gene
- Lj3g3v2661980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2661980.1 Non Characterized Hit- tr|I1LRC5|I1LRC5_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,68.75,3e-18,PPR_2,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat; SUBFAMILY NOT NAMED,NULL; FAMILY NOT N,gene.g49371.t1.1
(92 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g078580.1 | PPR containing plant-like protein | HC | chr3:... 97 3e-21
Medtr4g068360.1 | PPR containing plant-like protein | HC | chr4:... 56 7e-09
Medtr8g070060.1 | pentatricopeptide (PPR) repeat protein | HC | ... 54 3e-08
Medtr8g070050.1 | pentatricopeptide (PPR) repeat protein | HC | ... 54 4e-08
Medtr1g095880.1 | PPR containing plant-like protein | HC | chr1:... 51 3e-07
Medtr5g031740.1 | PPR containing plant-like protein | HC | chr5:... 50 4e-07
Medtr8g083130.1 | pentatricopeptide (PPR) repeat protein | HC | ... 49 1e-06
Medtr1g011520.1 | PPR containing plant-like protein | HC | chr1:... 49 1e-06
Medtr7g016910.1 | pentatricopeptide (PPR) repeat protein | HC | ... 49 1e-06
Medtr7g451470.1 | PPR containing plant-like protein | LC | chr7:... 48 2e-06
Medtr2g041700.1 | PPR containing plant-like protein | HC | chr2:... 47 3e-06
Medtr1g035250.1 | PPR containing plant-like protein | HC | chr1:... 47 3e-06
Medtr3g037490.1 | PPR containing plant-like protein | HC | chr3:... 46 6e-06
Medtr7g060720.1 | PPR containing plant-like protein, putative | ... 46 8e-06
Medtr7g103600.1 | pentatricopeptide (PPR) repeat protein | HC | ... 46 9e-06
>Medtr3g078580.1 | PPR containing plant-like protein | HC |
chr3:35401646-35399196 | 20130731
Length = 490
Score = 97.1 bits (240), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 20 FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKMG 79
+ + IRGLCHSG++ER V FM RMEE+G P VQTYNVVIRY+CD GE EKGL +FEKMG
Sbjct: 347 YNVVIRGLCHSGEIERGVEFMKRMEENGCMPSVQTYNVVIRYYCDEGELEKGLELFEKMG 406
>Medtr4g068360.1 | PPR containing plant-like protein | HC |
chr4:25633167-25630902 | 20130731
Length = 624
Score = 55.8 bits (133), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 11 LRLRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREK 70
+ ++SS+ F + I LC G ++A F+G ME +G++P V TYN VI +C G+ E
Sbjct: 211 MNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEA 270
Query: 71 GLSMFEKM 78
+F+ M
Sbjct: 271 ASKIFKTM 278
>Medtr8g070060.1 | pentatricopeptide (PPR) repeat protein | HC |
chr8:29740887-29742940 | 20130731
Length = 653
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM 78
+ + IR LC G+ R+V + RM+E GI P + +YN +I+ FC + EK +F+ M
Sbjct: 524 YNILIRSLCSIGETTRSVKLLRRMQEEGISPDIYSYNALIQIFCRMNKVEKAKKLFDSM 582
>Medtr8g070050.1 | pentatricopeptide (PPR) repeat protein | HC |
chr8:29734562-29735236 | 20130731
Length = 224
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 20 FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKMG 79
+ + IR LC G+ R+V + RM+E GI P + +YN +I+ FC + EK +F+ M
Sbjct: 83 YNILIRSLCSIGETTRSVKLLRRMQEEGISPDIYSYNALIQIFCRMNKVEKAKKLFDSMS 142
>Medtr1g095880.1 | PPR containing plant-like protein | HC |
chr1:43173038-43169315 | 20130731
Length = 769
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMF 75
I G C G +E+A F +M EH ++P + T N+++R C G EKGL++F
Sbjct: 568 IHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLF 619
>Medtr5g031740.1 | PPR containing plant-like protein | HC |
chr5:13615116-13619806 | 20130731
Length = 894
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 17 VGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFE 76
V + + + C G A+ F M E+GI P V TY V+I YFC G+ ++G+ M
Sbjct: 295 VPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLS 354
Query: 77 KM 78
M
Sbjct: 355 TM 356
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 13 LRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGL 72
LR+ V L I G C G ++ A+ +M+E G P V TY V++ FC+ G+ + L
Sbjct: 257 LRNEVSYTNL-IHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEAL 315
Query: 73 SMFEKM 78
FE+M
Sbjct: 316 KFFEEM 321
>Medtr8g083130.1 | pentatricopeptide (PPR) repeat protein | HC |
chr8:35125926-35130110 | 20130731
Length = 608
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 11 LRLRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREK 70
L L SV F + I GLC GD+ RAV + +E+ G R V+TY V+I C G+ +
Sbjct: 156 LGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSE 215
Query: 71 GLSMFEKM 78
+ KM
Sbjct: 216 AVGWLRKM 223
>Medtr1g011520.1 | PPR containing plant-like protein | HC |
chr1:2060030-2064273 | 20130731
Length = 587
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 11 LRLRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREK 70
L++ ++ + ++G C +GD+E A + +M G P TYN RYF G+ ++
Sbjct: 353 LQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDE 412
Query: 71 GLSMFEKM 78
G++++ KM
Sbjct: 413 GMNLYTKM 420
>Medtr7g016910.1 | pentatricopeptide (PPR) repeat protein | HC |
chr7:5347631-5344253 | 20130731
Length = 791
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 20 FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM- 78
+ + +RG C + M+ A+ M+++G RPGV YN V+ A + +G MFEKM
Sbjct: 313 YTILVRGCCRTYRMDVALRIFNEMKDNGFRPGVLVYNCVLDGLFKAAKVNEGCQMFEKMA 372
Query: 79 --GMVCACPIWTCIM 91
G+ +C + ++
Sbjct: 373 QEGVKASCSTYNILI 387
>Medtr7g451470.1 | PPR containing plant-like protein | LC |
chr7:17351106-17346828 | 20130731
Length = 1071
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 20 FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM 78
F + I GLC G + A+ F+ M E G P V TY ++I FC G+ + M+ +M
Sbjct: 316 FNIMIDGLCKKGYLVSALEFLNEMVEKGFEPNVITYTILINGFCKDGKIQDAFQMYGEM 374
>Medtr2g041700.1 | PPR containing plant-like protein | HC |
chr2:18319616-18321262 | 20130731
Length = 548
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKMGMVCA 83
I G C SG+++ A + MEE+ +P TY ++I C G + + +F+KM VC
Sbjct: 431 IDGYCKSGNVDEANKILAEMEENRCKPDKLTYTILIIGHCSKGRMAEAIGIFDKMLAVCC 490
Query: 84 CP 85
P
Sbjct: 491 AP 492
>Medtr1g035250.1 | PPR containing plant-like protein | HC |
chr1:12584008-12586490 | 20130731
Length = 662
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 16 SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMF 75
+V + I GLC G+M+ A+ +ME+ IRP V TY+ +I F +G+ +
Sbjct: 348 NVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETW 407
Query: 76 EKMGMVCAC----PIWTCIM 91
KM + C C ++TC++
Sbjct: 408 NKM-INCGCRPNVVVYTCMV 426
>Medtr3g037490.1 | PPR containing plant-like protein | HC |
chr3:13777398-13775665 | 20130731
Length = 577
Score = 46.2 bits (108), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 7 LISPLRLRSSV---GNF------KLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNV 57
L+ +RLR + G F + ++GLC SG E A M ME+ G+ TYN
Sbjct: 279 LVEAMRLRDEMERNGVFGDVFTCSILVKGLCDSGRFEEAKNLMEEMEKAGVFANAVTYNA 338
Query: 58 VIRYFCDAGEREKGLSMFEKM 78
VI +C G+ EK + + +M
Sbjct: 339 VIDGYCKMGDMEKAIEVCSQM 359
>Medtr7g060720.1 | PPR containing plant-like protein, putative | HC
| chr7:21955726-21958466 | 20130731
Length = 535
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 15 SSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSM 74
+S+ + I GLC G++ A M E G+ P TYN++I+ FC G ++G+ +
Sbjct: 399 ASLLTYNTLIAGLCEGGELCEAARLWDDMVEKGVAPNAFTYNMLIKGFCKVGNAKEGIRV 458
Query: 75 FEKM 78
E+M
Sbjct: 459 LEEM 462
>Medtr7g103600.1 | pentatricopeptide (PPR) repeat protein | HC |
chr7:41923424-41925949 | 20130731
Length = 776
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM 78
+ GLC G +E+A + ++E +G+ P +YN+++ +C G+ KG+ E+M
Sbjct: 329 LNGLCKVGKVEKAKEILAKLESNGVVPSPVSYNILVNAYCQKGDLNKGILTAEEM 383