Miyakogusa Predicted Gene

Lj3g3v2578300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2578300.1 tr|A0MSK8|A0MSK8_NICBE Nodulation signaling
pathway 1-like protein OS=Nicotiana benthamiana PE=2
SV=,77.19,2e-19,GRAS,Transcription factor GRAS,CUFF.44354.1
         (57 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g020840.1 | GRAS family transcription factor | HC | chr8:7...   113   4e-26
Medtr3g085310.1 | hypothetical protein | LC | chr3:38549364-3854...    54   3e-08

>Medtr8g020840.1 | GRAS family transcription factor | HC |
           chr8:7352443-7354694 | 20130731
          Length = 554

 Score =  113 bits (282), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/57 (91%), Positives = 55/57 (96%)

Query: 1   MEGEAAKALTNQREMNEEKEKWCGRMKEAGFAGEVFGEDAVDGGRALLRKYDSNWEM 57
           MEGEAAKALTNQREMNE +EKWC RMKEAGFAGEVFGEDA+DGGRALLRKYD+NWEM
Sbjct: 467 MEGEAAKALTNQREMNERREKWCERMKEAGFAGEVFGEDAIDGGRALLRKYDNNWEM 523


>Medtr3g085310.1 | hypothetical protein | LC |
          chr3:38549364-38548988 | 20130731
          Length = 72

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 9  LTNQREMNEEKEKWCGRMKEAGFAGEVFGEDAVDGGRALLR 49
          +  Q E+ E +EKWC RMKEA  AGE FGEDA+DG RALLR
Sbjct: 19 IIQQTEI-ERREKWCERMKEARLAGEAFGEDAIDGRRALLR 58