Miyakogusa Predicted Gene

Lj3g3v2578270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2578270.1 tr|Q4VYC9|Q4VYC9_MEDTR Baculoviral IAP
repeat-containing protein OS=Medicago truncatula GN=ZFP PE=4
,82.03,0,GIDE,E3 Ubiquitin ligase; seg,NULL,CUFF.44353.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g020850.1 | E3 ubiquitin ligase | HC | chr8:7360874-735521...   444   e-125

>Medtr8g020850.1 | E3 ubiquitin ligase | HC | chr8:7360874-7355214 |
           20130731
          Length = 383

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/278 (76%), Positives = 235/278 (84%), Gaps = 4/278 (1%)

Query: 19  FDGAVLGLAIAYAAVRTIVKFTATSAALRKINQAPXXXXX----XXXXXXXXXXXGKIVI 74
           FDGAVLG A+AY AVR+I KFT TSAALRKI  AP                    GKIVI
Sbjct: 19  FDGAVLGFAVAYVAVRSIRKFTLTSAALRKITAAPSVSVSDLRSLLTETDENSDEGKIVI 78

Query: 75  VRGTVDAKAAVDGSWKTFRPGVLVSRETGDRGVILQRTETCIYNEWKGLFGWTSDLRAIV 134
           VRGTVDAK  VDGSWK   PGVLVS E+GD+GV+LQRT+TCIYNEWKGLFGWTSDLRA+ 
Sbjct: 79  VRGTVDAKNVVDGSWKALWPGVLVSSESGDKGVVLQRTQTCIYNEWKGLFGWTSDLRALF 138

Query: 135 TRSWRQQESTSLRKVPFVLIDVGRQPYPEYVVVNLDGSRHPLPLITVYHKLQPISPSPYS 194
            RSWRQQESTSLRK+PFVLIDVGR   PEYVVVN+DGS HPLPL TVYH+LQP++P PY+
Sbjct: 139 LRSWRQQESTSLRKIPFVLIDVGRPSNPEYVVVNMDGSSHPLPLTTVYHRLQPVNPPPYT 198

Query: 195 FLQALFGHEYPVGLLDEEKILPLGKDISAVGLCNLRNGIAEIKSCKDLPYFLSDLDKDQM 254
           FLQALFGHEYPVGLLDEEKILPLGKD+SAVGLC+LRNGIAEIK+C DLPY+LSDL KDQM
Sbjct: 199 FLQALFGHEYPVGLLDEEKILPLGKDVSAVGLCSLRNGIAEIKACNDLPYYLSDLSKDQM 258

Query: 255 IVDLSFKTKILFWSGIVLGSMSVGVLSYAVVRNWNKWK 292
           IVDLSFKTK+LFWSGI+LGSMSVG++ YAVVRNWNKWK
Sbjct: 259 IVDLSFKTKLLFWSGILLGSMSVGIIGYAVVRNWNKWK 296