Miyakogusa Predicted Gene

Lj3g3v2576580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2576580.1 Non Characterized Hit- tr|C6SZ12|C6SZ12_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56808 PE,95.31,0,snRNP
Sm proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ribonucleoprotein LSM d,CUFF.44265.1
         (128 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g021250.1 | small nuclear ribonucleoprotein | HC | chr8:76...   243   4e-65
Medtr2g042700.1 | small nuclear ribonucleoprotein | HC | chr2:18...   226   6e-60
Medtr8g021250.2 | small nuclear ribonucleoprotein | HC | chr8:76...   198   1e-51
Medtr2g042700.2 | small nuclear ribonucleoprotein | HC | chr2:18...   180   3e-46
Medtr4g084910.1 | u6 snRNA-associated-like-Smprotein | HC | chr4...    62   2e-10
Medtr7g104930.1 | small nuclear ribonucleoprotein | HC | chr7:42...    52   2e-07

>Medtr8g021250.1 | small nuclear ribonucleoprotein | HC |
           chr8:7638054-7641793 | 20130731
          Length = 128

 Score =  243 bits (620), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 117/128 (91%), Positives = 123/128 (96%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWA PED+YLSTSLASYLDKKLL+LLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL
Sbjct: 1   MSWAAPEDLYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRK 120
           YCDIPLGLYVIRGENVVLIGE+D+EREELPPHM RV T EI+RAQK ERDAS+LKGTMRK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGEMDVEREELPPHMTRVPTEEIRRAQKVERDASELKGTMRK 120

Query: 121 RMEFLDLD 128
           RMEFLDLD
Sbjct: 121 RMEFLDLD 128


>Medtr2g042700.1 | small nuclear ribonucleoprotein | HC |
           chr2:18621815-18626360 | 20130731
          Length = 128

 Score =  226 bits (575), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 119/128 (92%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWA P+++ LSTSLA+YLDKKLLVLLRDGRKL+G LRSFDQFAN VLEGACERVIVGDL
Sbjct: 1   MSWAAPDELLLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDL 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRK 120
           YCD+PLGLYVIRGENVVLIGELDL +EELPPHM  VS A+I++AQKAERDASDLKGTMRK
Sbjct: 61  YCDVPLGLYVIRGENVVLIGELDLGKEELPPHMTCVSEADIRKAQKAERDASDLKGTMRK 120

Query: 121 RMEFLDLD 128
           RMEFLD D
Sbjct: 121 RMEFLDFD 128


>Medtr8g021250.2 | small nuclear ribonucleoprotein | HC |
           chr8:7638060-7641793 | 20130731
          Length = 129

 Score =  198 bits (503), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/108 (87%), Positives = 99/108 (91%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWA PED+YLSTSLASYLDKKLL+LLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL
Sbjct: 1   MSWAAPEDLYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAE 108
           YCDIPLGLYVIRGENVVLIGE+D+EREELPPHM RV T EI+R     
Sbjct: 61  YCDIPLGLYVIRGENVVLIGEMDVEREELPPHMTRVPTEEIRRVNTPN 108


>Medtr2g042700.2 | small nuclear ribonucleoprotein | HC |
           chr2:18621829-18626292 | 20130731
          Length = 110

 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 96/108 (88%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWA P+++ LSTSLA+YLDKKLLVLLRDGRKL+G LRSFDQFAN VLEGACERVIVGDL
Sbjct: 1   MSWAAPDELLLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDL 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAE 108
           YCD+PLGLYVIRGENVVLIGELDL +EELPPHM  VS A+I++   + 
Sbjct: 61  YCDVPLGLYVIRGENVVLIGELDLGKEELPPHMTCVSEADIRKVSSSN 108


>Medtr4g084910.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr4:33145686-33149143 | 20130731
          Length = 99

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 8/86 (9%)

Query: 1  MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGD 59
          M+  GP        L S +D+++ V+  DGR ++G L+ FDQ  N +L+ + ERV    +
Sbjct: 1  MATGGP-------GLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTRE 53

Query: 60 LYCDIPLGLYVIRGENVVLIGELDLE 85
              + LGLY+IRG+N+ ++GELD E
Sbjct: 54 GVQQLVLGLYIIRGDNISVVGELDEE 79


>Medtr7g104930.1 | small nuclear ribonucleoprotein | HC |
          chr7:42544003-42542017 | 20130731
          Length = 80

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 1  MSWAG-PEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGD 59
          MS +G P D      L  Y+DK+L + L   R ++GTLR FDQF N V++   E  + G+
Sbjct: 1  MSRSGQPPD------LKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVE--VNGN 52

Query: 60 LYCDIPLGLYVIRGENVVLIGELD 83
             DI  G+ VIRG +VV +  L+
Sbjct: 53 EKNDI--GMVVIRGNSVVTVEALE 74