Miyakogusa Predicted Gene

Lj3g3v2532280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2532280.1 Non Characterized Hit- tr|K3YZE7|K3YZE7_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si019655,36.29,0.00000004,LRRNT_2,Leucine-rich repeat-containing
N-terminal, type 2; LRR_1,Leucine-rich repeat; FAMILY NOT
NAM,CUFF.44155.1
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g023720.1 | LRR receptor-like kinase | HC | chr8:8615892-8...   110   1e-24
Medtr8g099195.2 | LRR receptor-like kinase | HC | chr8:41728649-...    54   1e-07
Medtr8g099195.1 | LRR receptor-like kinase | HC | chr8:41728311-...    54   1e-07
Medtr2g014560.1 | LRR receptor-like kinase family protein | HC |...    49   2e-06

>Medtr8g023720.1 | LRR receptor-like kinase | HC |
           chr8:8615892-8612008 | 20130731
          Length = 1088

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 79  EGVTCD-GDQRVTHLLLPSRGLFGVISPSLTNLAAXXXXXXXXXXX-XXXXQSQFFSXXX 136
           EG+TCD  +  VTHL LPSRGL G IS SL                     Q+ FF    
Sbjct: 81  EGITCDQNNHHVTHLFLPSRGLTGFISFSLLTSLESLSHLNLSHNRFYGNLQNHFFDLLN 140

Query: 137 XXXXXXXSYNRLSGELPPFVADNS-----TSVVIQEVGLSSNLFNGTLPSSLLQHLA-GG 190
                  SYN  S ELP FV  ++      S VIQE+ LSSN FNGTLP SL+Q+L  GG
Sbjct: 141 HLLVLDLSYNHFSSELPTFVKPSNGTGTGNSSVIQELDLSSNSFNGTLPVSLIQYLEEGG 200

Query: 191 SLISFNVSNNSFTGQIPTSIFCTNDRNSSS 220
           +LISFNVSNNSFTG IP SIFC N  N+S+
Sbjct: 201 NLISFNVSNNSFTGPIPISIFCVNQLNNSA 230


>Medtr8g099195.2 | LRR receptor-like kinase | HC |
           chr8:41728649-41731877 | 20130731
          Length = 639

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 66/136 (48%), Gaps = 14/136 (10%)

Query: 80  GVTCDGDQ-RVTHLLLPSRGLFGVISP-SLTNLAAXXXXXXXXXXXXXXXQSQFFSXXXX 137
           GVTC+ D+ RV  + LP  G  G I P +++NL+A                S F +    
Sbjct: 54  GVTCNEDRSRVIAIRLPGVGFHGNIPPNTISNLSALEILSLRSNLISGFFPSDFSNLKNL 113

Query: 138 XXXXXXSYNRLSGELPPFVADNSTSVVIQEVGLSSNLFNGTLPSSL--LQHLAGGSLISF 195
                 S N LSG LP F    + +VV     LS+N FNGT+P SL  L  LAG      
Sbjct: 114 SFLYLQS-NNLSGPLPDFSVWKNLTVV----NLSNNKFNGTIPLSLSNLTQLAG-----L 163

Query: 196 NVSNNSFTGQIPTSIF 211
           N++NNS +G+IP   F
Sbjct: 164 NLANNSLSGEIPDIHF 179


>Medtr8g099195.1 | LRR receptor-like kinase | HC |
           chr8:41728311-41731831 | 20130731
          Length = 639

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 66/136 (48%), Gaps = 14/136 (10%)

Query: 80  GVTCDGDQ-RVTHLLLPSRGLFGVISP-SLTNLAAXXXXXXXXXXXXXXXQSQFFSXXXX 137
           GVTC+ D+ RV  + LP  G  G I P +++NL+A                S F +    
Sbjct: 54  GVTCNEDRSRVIAIRLPGVGFHGNIPPNTISNLSALEILSLRSNLISGFFPSDFSNLKNL 113

Query: 138 XXXXXXSYNRLSGELPPFVADNSTSVVIQEVGLSSNLFNGTLPSSL--LQHLAGGSLISF 195
                 S N LSG LP F    + +VV     LS+N FNGT+P SL  L  LAG      
Sbjct: 114 SFLYLQS-NNLSGPLPDFSVWKNLTVV----NLSNNKFNGTIPLSLSNLTQLAG-----L 163

Query: 196 NVSNNSFTGQIPTSIF 211
           N++NNS +G+IP   F
Sbjct: 164 NLANNSLSGEIPDIHF 179


>Medtr2g014560.1 | LRR receptor-like kinase family protein | HC |
           chr2:4194105-4198511 | 20130731
          Length = 993

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 6/65 (9%)

Query: 146 NRLSGELPPFVADNSTSVVIQEVGLSSNLFNGTLPSSLLQHLAGGSLISFNVSNNSFTGQ 205
           NR +GELP  +AD+     + E+ +  NL  G LP  L ++   G LI F+VSNN F+G+
Sbjct: 314 NRFTGELPVSIADSPN---LYELKVFENLLTGELPEKLGKN---GPLIYFDVSNNKFSGR 367

Query: 206 IPTSI 210
           IP S+
Sbjct: 368 IPVSL 372