Miyakogusa Predicted Gene
- Lj3g3v2517590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2517590.1 tr|Q8W214|Q8W214_SOLTU Single-stranded DNA
binding protein (Precursor) OS=Solanum tuberosum PE=2
SV=,33.7,7e-19,seg,NULL; RNA-binding domain, RBD,NULL; RNA recognition
motif,RNA recognition motif domain; RRM_1,RN,CUFF.44112.1
(290 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 166 3e-41
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 118 7e-27
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 111 9e-25
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 111 9e-25
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 111 9e-25
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 95 9e-20
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 95 9e-20
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 94 2e-19
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 89 7e-18
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 87 2e-17
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 86 3e-17
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 80 3e-15
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 77 2e-14
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 77 2e-14
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 72 7e-13
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 8e-13
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 70 3e-12
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 69 6e-12
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 69 6e-12
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 67 3e-11
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 66 4e-11
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 66 4e-11
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 64 2e-10
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 64 2e-10
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 64 2e-10
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 63 3e-10
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 4e-10
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 61 2e-09
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 60 3e-09
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 60 3e-09
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 60 3e-09
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 59 5e-09
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-09
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-09
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 8e-09
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 8e-09
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 9e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 58 1e-08
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 57 2e-08
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 57 2e-08
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 55 6e-08
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 6e-08
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 55 6e-08
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 55 7e-08
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 55 7e-08
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 54 1e-07
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 54 1e-07
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 54 2e-07
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr5g089300.1 | Pre-mRNA branch site p14-like protein | HC | c... 52 8e-07
Medtr5g089300.2 | Pre-mRNA branch site p14-like protein | HC | c... 52 8e-07
Medtr5g089300.3 | Pre-mRNA branch site p14-like protein | HC | c... 52 8e-07
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 52 9e-07
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 52 9e-07
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 52 1e-06
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 51 1e-06
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 50 3e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 49 8e-06
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 48 9e-06
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 9e-06
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 9e-06
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 120/183 (65%), Gaps = 39/183 (21%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P ++YVCNLPRSC+ HLL LF P+GT++S EV RNAETGES+G YV M S N+AK+A+
Sbjct: 42 PTQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNAL 101
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
AALDGSDVGGRE+ VKFSVE N+ M +RT YYE PHK+YVGNL
Sbjct: 102 AALDGSDVGGREMLVKFSVE--------TLNSPPM---RRRTIYYEGPHKVYVGNL---- 146
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIV 280
+G K+RVYAF+S+ S+ ERDA+MSLNGTEF GRT+V
Sbjct: 147 -----------WGK-------------KSRVYAFVSYLSQRERDASMSLNGTEFCGRTLV 182
Query: 281 VRE 283
VRE
Sbjct: 183 VRE 185
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 7/189 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP S ++ L D+F GT++SVE+ + T SRG +V M+S AK AI
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 164 DGSDVGGRELRVKF-SVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
DGS VGGR +V F V ER Y + ++PHK+Y GNL +
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRG-----FVDSPHKIYAGNLGWGMNS 225
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVV 281
+ LR+ F +L +++++R G++R + F++FE+ +AA+ ++NG E GR + +
Sbjct: 226 QDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRL 285
Query: 282 REGAQRTEP 290
A RT P
Sbjct: 286 NLAAARTSP 294
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 11/189 (5%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V NLP S +++ L LF G ++SVE+ + T SRG +V M ++ A+ AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 164 DGSDVGGRELRVKF-SVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
DG+ VGGR ++V F V + +R G Y Y ++PHK+Y GNL +
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQ----MGSTYRG-----YVDSPHKIYAGNLGWDMTS 220
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVV 281
+ LR F + +LS +V+++R GK+R Y F+SFE+ + + A+S +NG E GR + +
Sbjct: 221 QYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRL 280
Query: 282 REGAQRTEP 290
+ +P
Sbjct: 281 KLAVDNRKP 289
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +IY NL + +L F ++S +V G+SRG G+V E+ + A+
Sbjct: 206 PHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Query: 161 AALDGSDVGGRELRVKFSVE 180
+A++G +V GR LR+K +V+
Sbjct: 266 SAMNGVEVQGRPLRLKLAVD 285
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 11/189 (5%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V NLP S +++ L LF G ++SVE+ + T SRG +V M ++ A+ AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 164 DGSDVGGRELRVKF-SVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
DG+ VGGR ++V F V + +R G Y Y ++PHK+Y GNL +
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQ----MGSTYRG-----YVDSPHKIYAGNLGWDMTS 220
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVV 281
+ LR F + +LS +V+++R GK+R Y F+SFE+ + + A+S +NG E GR + +
Sbjct: 221 QYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRL 280
Query: 282 REGAQRTEP 290
+ +P
Sbjct: 281 KLAVDNRKP 289
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +IY NL + +L F ++S +V G+SRG G+V E+ + A+
Sbjct: 206 PHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Query: 161 AALDGSDVGGRELRVKFSVE 180
+A++G +V GR LR+K +V+
Sbjct: 266 SAMNGVEVQGRPLRLKLAVD 285
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 120/264 (45%), Gaps = 27/264 (10%)
Query: 27 SSKPFVSHFRHPNCDPCLFSTTTILQPSTWKPTLFVAAAIPEAVNGEKSLNTQNDDVFKN 86
S++ FVS + +P TT + W P + VA A EAV + + +
Sbjct: 32 SNRMFVSLISQSSVEPLSIGTT--VSHKLWFPRISVAVAQEEAVVAVEDEEKVVVEEEEK 89
Query: 87 XXXXXXXXXXXXXGPC--------EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAE 138
G ++Y NLP S ++A L L + YG+ +EV + +
Sbjct: 90 EEEEVVEEKENIGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRD 149
Query: 139 TGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYAS 198
TG+SRG +V M + + I LDG + GR LRV FS +
Sbjct: 150 TGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK----------------PK 193
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
PK Y E +KL+VGNLA V E L F G V+ RVL D + GK+R Y F+S+
Sbjct: 194 PKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYA 253
Query: 259 SEAERDAAMS-LNGTEFYGRTIVV 281
+++E D A++ ++ E GRT+ V
Sbjct: 254 TKSEMDTALAIMDNVELEGRTLRV 277
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V NL + + L F+ +GT++ V + ETG+SRG G+V + + +A+A
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 163 LDGSDVGGRELRVKFS 178
+D ++ GR LRV +
Sbjct: 265 MDNVELEGRTLRVSLA 280
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 123/257 (47%), Gaps = 18/257 (7%)
Query: 37 HPNCDPCLFSTTTILQPSTWKPTLFVAAAIPEAVNGEKSLNTQNDDVFKNXXXXXXXXXX 96
+PN P FS+ + L+PS F++ AV+ E Q +D F +
Sbjct: 31 NPNFKPFSFSSVS-LRPSLSISHRFISRV---AVSSEFD---QEEDTFDDGDDTPSYSPN 83
Query: 97 XXXGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSA 156
++V NLP S ++A L ++F+ G + VEV + TG SRG G+V M S
Sbjct: 84 Q-----RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEV 138
Query: 157 KSAIAALDGSDVGGRELRVKFS----VEMSLERTDANAN-AGEMYASPKRTFYYEAPHKL 211
++A L+G V GRELRV R N G+ P R + +++
Sbjct: 139 EAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRV 198
Query: 212 YVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLN 270
+VGNLA V L + F G VL +V++DR+ G++R + F++F S E D+A+ +L+
Sbjct: 199 HVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLD 258
Query: 271 GTEFYGRTIVVREGAQR 287
G + GR I V R
Sbjct: 259 GADLNGRAIRVSPADSR 275
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 123/257 (47%), Gaps = 18/257 (7%)
Query: 37 HPNCDPCLFSTTTILQPSTWKPTLFVAAAIPEAVNGEKSLNTQNDDVFKNXXXXXXXXXX 96
+PN P FS+ + L+PS F++ AV+ E Q +D F +
Sbjct: 31 NPNFKPFSFSSVS-LRPSLSISHRFISRV---AVSSEFD---QEEDTFDDGDDTPSYSPN 83
Query: 97 XXXGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSA 156
++V NLP S ++A L ++F+ G + VEV + TG SRG G+V M S
Sbjct: 84 Q-----RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEV 138
Query: 157 KSAIAALDGSDVGGRELRVKFS----VEMSLERTDANAN-AGEMYASPKRTFYYEAPHKL 211
++A L+G V GRELRV R N G+ P R + +++
Sbjct: 139 EAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRV 198
Query: 212 YVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLN 270
+VGNLA V L + F G VL +V++DR+ G++R + F++F S E D+A+ +L+
Sbjct: 199 HVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLD 258
Query: 271 GTEFYGRTIVVREGAQR 287
G + GR I V R
Sbjct: 259 GADLNGRAIRVSPADSR 275
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V N P ++ L LF GT+ EV N +T SRG G+V M ++ A+SA+
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G D GR L V + + E RTF E ++YV NLA V
Sbjct: 169 KFNGYDYNGRSLVVN--------KASPKGSRPERTERAPRTF--EPVLRIYVANLAWEVD 218
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE-RDAAMSLNGTEFYGRTIV 280
+L F G ++S RV++DR+ G++R + F++ E E DA +L+G GRTI
Sbjct: 219 NSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIR 278
Query: 281 VREGAQR 287
V R
Sbjct: 279 VSVAEDR 285
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++YV N+PR+ + L + + +G + EV + + SR +V M+++ A +A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
L+G+++GGRE++V + E L AGE + + ++P+K+YVGNLA+ V
Sbjct: 121 LNGTEIGGREIKVNIT-EKPLTTEGLPVQAGE-------STFVDSPYKVYVGNLAKNVTS 172
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVV 281
+ L+ F GN LS +V K+ + F++F S+ + +AA+ S N G+ I V
Sbjct: 173 DSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRV 232
Query: 282 REG 284
+
Sbjct: 233 NKA 235
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 207 APHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDA 265
A KLYVGN+ R V ++L G V V++D+ ++R +AF++ ++ E A
Sbjct: 58 ALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAA 117
Query: 266 AMSLNGTEFYGRTIVV 281
A LNGTE GR I V
Sbjct: 118 AEKLNGTEIGGREIKV 133
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+I+V NLP ++ L LF+ GT+ EV N +T SRG G+V M + + A+
Sbjct: 122 LKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVN 181
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
G ++ GR L V + A G RTF + + YVGNL V
Sbjct: 182 KFSGFELDGRLLTV-----------NKAAPRGTPRLRQPRTF--NSGLRAYVGNLPWDVD 228
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE-RDAAMSLNGTEFYGRTIV 280
L F G V S +V++DR+ G++R + F++ +EAE DA +L+G F GR I
Sbjct: 229 NSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIR 288
Query: 281 VREGAQR 287
V +R
Sbjct: 289 VNVAEER 295
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 11/171 (6%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V N P ++ L LF GT+ EV N +T SRG G+V M ++ A+SA+
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G D GR L V + + E RTF E ++YV NLA V
Sbjct: 169 KFNGYDYNGRSLVVN--------KASPKGSRPERTERAPRTF--EPVLRIYVANLAWEVD 218
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE-RDAAMSLNG 271
+L F G ++S RV++DR+ G++R + F++ E E DA +L+G
Sbjct: 219 NSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL HL + F +G I+S+ + ++ E G+S+G G+V +S + A+ A+ A+
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 164 DGSDVGGRELRV-----KFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLAR 218
DGS G + L V K E L M ++ +YV N+
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSN------------IYVKNIDT 302
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGR 277
V E+LR+HF G VLS +V+ D K G ++ + F+ F + E +MS NG F+G+
Sbjct: 303 SVGDEELRDHFSACGEVLSAKVMRDDK-GTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGK 361
Query: 278 TIVVREGAQRTE 289
+ V + AQ+ E
Sbjct: 362 PLYV-DFAQKKE 372
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 24/194 (12%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++V NL S + L DLF+ YG I+S +++R +E G+S+G GY+ +S SA A
Sbjct: 101 GKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIAR-SEDGKSKGFGYIQFDSEESANVA 159
Query: 160 IAALDGSDVGGRELRV-KF--SVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNL 216
I ++GS V +++ V KF E SL DA LYV NL
Sbjct: 160 IQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFT------------------NLYVKNL 201
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFY 275
VV + L F FG ++S+ + D + G+++ + F++++S + R A +++G++F
Sbjct: 202 DPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAMEAMDGSQFG 260
Query: 276 GRTIVVREGAQRTE 289
+ + V ++ E
Sbjct: 261 SKILYVARAQKKVE 274
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L A L F + T+IS V +++ TG+S GYV + S A AI
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ S + G+ +RV M L R DA+A ++V NLA +
Sbjct: 77 NHSSLNGKVIRV-----MWLSR-DADARK-------------SGKGNVFVKNLAASIDNV 117
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVVR 282
L + F ++GN+LS ++ + GK++ + ++ F+SE + A+ +NG+ + I V
Sbjct: 118 GLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVG 176
Query: 283 EGAQRTE 289
+ +++E
Sbjct: 177 KFIRKSE 183
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G +++ NL S + L D F +G ++S +V+ + G+S+G G+V ++ +AKSA
Sbjct: 116 GSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSA 174
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I LDG + +++ V F V ER N SPK T +YV N++
Sbjct: 175 IKQLDGMLINDKQVYVGFFVRHQ-ERARTN-------GSPKFT-------NVYVKNISEA 219
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRT 278
E L+ F FG + S V+ D GK+R + F++F+S AA+ LNGT
Sbjct: 220 STDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDK 278
Query: 279 IVVREGAQR 287
++ AQR
Sbjct: 279 VLFVGRAQR 287
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV N+ + L LF P+G I S V ++A G+SR G+V +S +SA +A+ L
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYAS--PKRTFYYEAPH--KLYVGNLARV 219
+G+ + ++ + ER + E+ A +R YE LY+ NL
Sbjct: 270 NGTAINDDKVLFVGRAQRKAEREN------ELKAKFEQERISRYEKLQGANLYLKNLDDD 323
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
E+L++ F FG V S RV+ D G ++ F++F + E + A++ + GR
Sbjct: 324 FNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKP 382
Query: 280 VVREGAQRTE 289
+ AQR E
Sbjct: 383 LFVAVAQRKE 392
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+YV +L S N L DLF ++S+ V R+ S G YV + A +A
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L+ + + + +R+ FS R + N +++ NL +
Sbjct: 90 LLNFTPLNEKPIRIMFSQRDPSVRKSGSGN-------------------VFIKNLDTSID 130
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRTIV 280
+ L + F FG VLS +V D G+++ Y F+ F++ EA + A L+G + +
Sbjct: 131 HKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVY 189
Query: 281 V 281
V
Sbjct: 190 V 190
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G +++ NL S + L D F +G ++S +V+ + G+S+G G+V ++ +AKSA
Sbjct: 116 GSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSA 174
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I LDG + +++ V F V ER N SPK T +YV N++
Sbjct: 175 IKQLDGMLINDKQVYVGFFVRHQ-ERARTN-------GSPKFT-------NVYVKNISEA 219
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRT 278
E L+ F FG + S V+ D GK+R + F++F+S AA+ LNGT
Sbjct: 220 STDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDK 278
Query: 279 IVVREGAQR 287
++ AQR
Sbjct: 279 VLFVGRAQR 287
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV N+ + L LF P+G I S V ++A G+SR G+V +S +SA +A+ L
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYAS--PKRTFYYEAPH--KLYVGNLARV 219
+G+ + ++ + ER + E+ A +R YE LY+ NL
Sbjct: 270 NGTAINDDKVLFVGRAQRKAEREN------ELKAKFEQERISRYEKLQGANLYLKNLDDD 323
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
E+L++ F FG V S RV+ D G ++ F++F + E + A++ + GR
Sbjct: 324 FNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKP 382
Query: 280 VVREGAQRTE 289
+ AQR E
Sbjct: 383 LFVAVAQRKE 392
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+YV +L S N L DLF ++S+ V R+ S G YV + A +A
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L+ + + + +R+ FS R + N +++ NL +
Sbjct: 90 LLNFTPLNEKPIRIMFSQRDPSVRKSGSGN-------------------VFIKNLDTSID 130
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRTIV 280
+ L + F FG VLS +V D G+++ Y F+ F++ EA + A L+G + +
Sbjct: 131 HKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVY 189
Query: 281 V 281
V
Sbjct: 190 V 190
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V NL S + + L D+FK +G I+S +V +E G+S+G G+V E+ SA +AI L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVM-SEDGKSKGYGFVQFETEESANAAIERL 158
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G VG +++ V V+ S + +S T Y LY+ NL +
Sbjct: 159 NGYLVGDKQIYVGKFVKKS-----------DRISSGPDTRYTN----LYMKNLDLDISET 203
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVVR 282
LR F FG ++S+ V D G ++ + F++F++ + AM ++NG + + + V
Sbjct: 204 LLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVA 262
Query: 283 EGAQRTE 289
++ E
Sbjct: 263 RAQKKAE 269
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 21/190 (11%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +YV +L + + L D F + T+ SV + R++ +G+S GYV S + A AI
Sbjct: 9 PASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAI 68
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
+ S + G+ +RV +S R D +A + ++V NLA +
Sbjct: 69 EVKNHSTLNGKAIRVMWS------RRDPDARKSCI-------------GNVFVKNLAESI 109
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTI 279
L + F +FGN+LS +V+ + GK++ Y F+ FE+E +AA+ LNG + I
Sbjct: 110 DNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQI 168
Query: 280 VVREGAQRTE 289
V + ++++
Sbjct: 169 YVGKFVKKSD 178
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+Y+ NL + L + F +G IIS+ V++++ G S+G G+V ++ AK A+ +
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G +G + L V + ER E ++ Y+ + +YV N+ V E
Sbjct: 250 NGLQLGSKILYVA-RAQKKAEREQILHQQFE-EKRKEQVLKYKGSN-IYVKNIDDNVSDE 306
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVVR 282
LR+HF G + S +++ D K G ++ + F+ F + E + A+ S +G F+G+ + V
Sbjct: 307 GLRDHFSVCGTITSAKIMRDDK-GISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVS 365
Query: 283 EGAQRTE 289
AQR E
Sbjct: 366 L-AQRKE 371
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V NLP S + + DLF GT+I VE+ ++ + G+ +G +V M+S A++A+
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ +++ GR LRV+F+ R A EA + +Y NLA +
Sbjct: 157 NATEISGRILRVEFAKGFKKPRPPPPAPT-----------PKEARYVIYASNLAWKARST 205
Query: 224 QLRNHFIR-FGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVV 281
LR+ F F +S RV+ GK+ Y F+S+ +E E +AA+S L G E GR ++V
Sbjct: 206 HLRDIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLV 265
Query: 282 R 282
+
Sbjct: 266 K 266
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L + N + L DLF G ++SV V R+ T S G GYV + A A+ L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ + + + +RV +S R AN +++ NL + + +
Sbjct: 94 NFTPMNNKSIRVMYSHRDPSSRKSGTAN-------------------IFIKNLDKTIDHK 134
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAAMSLNGTEFYGRTIVV 281
L + F FG ++S ++ D G+++ Y F+ FE+E + ++A LNG + + V
Sbjct: 135 ALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV 192
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 96/196 (48%), Gaps = 28/196 (14%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I++ NL ++ + L D F +G I+S +++ + +G+S+G G+V E+ +SA++A
Sbjct: 118 GTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNA 176
Query: 160 IAALDGSDVGGRELRV-----KFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVG 214
I L+G + +++ V K + L +T N +YV
Sbjct: 177 IDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFN--------------------NVYVK 216
Query: 215 NLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE-SEAERDAAMSLNGTE 273
NL+ + L+N F +G + S ++ D G+++ + F++FE +E A +LNG +
Sbjct: 217 NLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAVEALNGKK 275
Query: 274 FYGRTIVVREGAQRTE 289
+ V + +++E
Sbjct: 276 VDDKEWYVGKAQKKSE 291
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 6/187 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL S L + F YGTI S + R+A+ G S+ G+V E+ A A+ AL
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEAL 271
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G V +E V + + S ER E ++ + LY+ NL + E
Sbjct: 272 NGKKVDDKEWYVGKAQKKS-EREQELKGRFEQTVKESVVDKFQGLN-LYLKNLDDSITDE 329
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVVR 282
+L+ F FG + S +++ D G +R F++F + E A+ +NG + + V
Sbjct: 330 KLKEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 388
Query: 283 EGAQRTE 289
AQR E
Sbjct: 389 V-AQRKE 394
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 21/179 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L + + L DLF G ++SV V R+ T S G GYV + A A+ L
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ + + R +R+ +S R N +++ NL + + +
Sbjct: 96 NFTPLNNRPIRIMYSHRDPSIRKSGQGN-------------------IFIKNLDKAIDHK 136
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRTIVV 281
L + F FGN+LS +V D G+++ Y F+ F++ EA + A LNG + + V
Sbjct: 137 ALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 22/193 (11%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I++ NL ++ + L D F +G I+S +V+ + +G+S+G G+V ++ +A+ A
Sbjct: 120 GQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKA 178
Query: 160 IAALDGSDVGGRELRVK-FSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLAR 218
I L+G + +++ V F + E T A + ++V NL+
Sbjct: 179 IEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKF----------------NNVFVKNLSE 222
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES--EAERDAAMSLNGTEFYG 276
++L+ F FG + S V+ D GK++ + F++FES +A R A +LNG +
Sbjct: 223 STTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAAR-AVEALNGKKIDD 280
Query: 277 RTIVVREGAQRTE 289
+ V + +++E
Sbjct: 281 KEWYVGKAQKKSE 293
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V NL S L F +GTI S V R+ + G+S+ G+V ES + A A+ AL
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEAL 273
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G + +E V + + S ER E Y A LYV NL + E
Sbjct: 274 NGKKIDDKEWYVGKAQKKS-EREHELKIKFEQSMKEAADKYQGA--NLYVKNLDDSIADE 330
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES--EAERDAAMSLNGTEFYGRTIVV 281
+L+ F +G + S +V+ D G +R F++F + EA R A + +NG + + V
Sbjct: 331 KLKELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASR-ALLEMNGKMVASKPLYV 388
Query: 282 REGAQRTE 289
AQR E
Sbjct: 389 TL-AQRKE 395
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 18/191 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I++ NL R+ + L D F +G I+S +++ +A +G S+G G+V E+ SA+SA
Sbjct: 110 GAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSA 168
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I L+G + + + V + +R +A +NA F + +YV NL+
Sbjct: 169 IDKLNGMLLNDKPVYVG-HFQRKQDRDNALSNA---------KF-----NNVYVKNLSES 213
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERDAAMSLNGTEFYGRT 278
V + L+N F +G + S V+ D GK++ + F++F ++A +A +LNG +F +
Sbjct: 214 VTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKE 272
Query: 279 IVVREGAQRTE 289
V + ++ E
Sbjct: 273 WYVGKALKKYE 283
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L + L DLF G ++SV + R+ + +S G GYV + + A A+ L
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ + + + +R+ +S R AN +++ NL R + +
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSGAAN-------------------IFIKNLDRAIDHK 126
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVV 281
L + F FGN+LS ++ D G ++ Y F+ FE+E +A+ LNG + + V
Sbjct: 127 ALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 22/195 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL S L + F YGTI S V R+ + G+S+ G+V E+ ++A A+ AL
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEAL 263
Query: 164 DGSDVGGRELRV-----KFSVEMSL-ERTDANANAGEMYASPKRTF--YYEAPHKLYVGN 215
+G +E V K+ E+ L ER + S K T +Y A LY+ N
Sbjct: 264 NGKKFDDKEWYVGKALKKYERELELKERHEQ---------SMKETVDKFYGA--NLYLKN 312
Query: 216 LARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEF 274
L V E+L F FG V S ++L D QG +R F++F + E A++ +NG
Sbjct: 313 LDDSVTDEKLSELFSEFGTVTSCKILRD-PQGISRGSGFVAFSTPEEATRALAEMNGKMV 371
Query: 275 YGRTIVVREGAQRTE 289
G+ + V ++ E
Sbjct: 372 AGKPLYVAPAQKKEE 386
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + N L + F YG + + ++ TG +RG G+V+ I+ A + I
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPAVADIV 63
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANA---NAGEMYASPK--RTFYYEAPHKLYVGNL 216
+ ++ GR + K +V R D N +G ++ SP RT K++VG L
Sbjct: 64 VQEKHNIDGRMVEAKKAVP----RDDQNVLSRTSGSIHGSPGPGRT------RKIFVGGL 113
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYG 276
A V + +F +FG + V V++D + R + F++++SE D + E G
Sbjct: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG 173
Query: 277 RTIVVR 282
+ + V+
Sbjct: 174 KMVEVK 179
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + N L + F YG + + ++ TG +RG G+V+ I+ A + I
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPAVADIV 63
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANA---NAGEMYASPK--RTFYYEAPHKLYVGNL 216
+ ++ GR + K +V R D N +G ++ SP RT K++VG L
Sbjct: 64 VQEKHNIDGRMVEAKKAVP----RDDQNVLSRTSGSIHGSPGPGRT------RKIFVGGL 113
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYG 276
A V + +F +FG + V V++D + R + F++++SE D + E G
Sbjct: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG 173
Query: 277 RTIVVR 282
+ + V+
Sbjct: 174 KMVEVK 179
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P ++++ + N L F+ +G ++ + ++ TG +RG G+V+ + A+ +
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANA---GEMYASPKRTFYYEAPHKLYVGNLA 217
++ + GR + K +V + +N+ G +P RT K++VG LA
Sbjct: 63 --MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRT------KKIFVGGLA 114
Query: 218 RVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGR 277
V +N+F +FG + V V++D + R + F++++SE + + E G+
Sbjct: 115 STVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
Query: 278 TIVVR 282
+ V+
Sbjct: 175 MVEVK 179
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P ++++ + N L F+ +G ++ + ++ TG +RG G+V+ + A+ +
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANA---GEMYASPKRTFYYEAPHKLYVGNLA 217
++ + GR + K +V + +N+ G +P RT K++VG LA
Sbjct: 63 --MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRT------KKIFVGGLA 114
Query: 218 RVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGR 277
V +N+F +FG + V V++D + R + F++++SE + + E G+
Sbjct: 115 STVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
Query: 278 TIVVR 282
+ V+
Sbjct: 175 MVEVK 179
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P ++++ + N L F+ +G ++ + ++ TG +RG G+V+ + A+ +
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANA---GEMYASPKRTFYYEAPHKLYVGNLA 217
++ + GR + K +V + +N+ G +P RT K++VG LA
Sbjct: 63 --MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRT------KKIFVGGLA 114
Query: 218 RVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGR 277
V +N+F +FG + V V++D + R + F++++SE + + E G+
Sbjct: 115 STVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
Query: 278 TIVVR 282
+ V+
Sbjct: 175 MVEVK 179
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L + N A L DLF +ISV V R+ T S G GYV + A +A+ L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ + G+ +R+ FS L R AN L++ NL + +
Sbjct: 87 NYVPLNGKPIRIMFSHRDPLIRKTGFAN-------------------LFIKNLETSIDNK 127
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRTIVV 281
L F FGNVLS +V D G ++ + F+ F++ ++ ++A L+G + + V
Sbjct: 128 ALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYV 185
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL S L LF +G I SV + + + G S+ G+V +S +SA +A+ L
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMK-YDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYE-APHKLYVGNLARVVKP 222
+GS + +V F V + ++++ A + K Y + LY+ N+ + +
Sbjct: 261 NGSTT--NDGKVLF-VGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNE 317
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVR 282
E+L+ F FG + S +V+ D + G+++ F++F + E A+ + G+ V
Sbjct: 318 EKLKELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYV 376
Query: 283 EGAQRTE 289
AQR E
Sbjct: 377 SVAQRKE 383
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 23/192 (11%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G +++ NL S + L + F +G ++S +V+ ++ G S+G G+V ++ SAK+A
Sbjct: 111 GFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNA 169
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I LDG + +++ V + V ER+ SPK T +YV NL+
Sbjct: 170 IEKLDGMLMNDKKVYVGYFVRCQ-ERS-----------SPKFT-------NVYVKNLSES 210
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE-SEAERDAAMSLNG-TEFYGR 277
E L+ F FG + SV ++ G ++ + F++F+ S++ A LNG T G+
Sbjct: 211 YTYEDLKQLFNSFGVITSVLIM-KYDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGK 269
Query: 278 TIVVREGAQRTE 289
+ V +++E
Sbjct: 270 VLFVGRAQKKSE 281
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 22/173 (12%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ +L + +L F G +IS+++ RN TG+ G G++ S ++A+ +
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 164 DGSDVGGRELRVKF---SVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
+G+ + G E + S + R DA + H ++VG+LA V
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGPD-----------------HSIFVGDLAPDV 119
Query: 221 KPEQLRNHF-IRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNG 271
L+ F +G+V +V+ D G+++ Y F+ F E+ER+ AMS +NG
Sbjct: 120 TDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNG 172
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I+V +L A L F Y + V + +TG SRG G+V + A+SA
Sbjct: 129 GHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSA 188
Query: 160 IAALDGSDVGGRELRVKFSVEMS--------------LERTDANA-NAGEMYA--SPKRT 202
I L G +G R++R ++ + + +E T + A EM + SP++
Sbjct: 189 INDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKN 248
Query: 203 FYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE 262
Y +YVGNLA V L +HF + L V + D + + + + F+ + + E
Sbjct: 249 PQYTT---VYVGNLAPEVTSVDLHHHF----HALGVGTIEDVRVQRDKGFGFVRYSTHGE 301
Query: 263 RDAAMSLNGTEF-YGRTIVVREGAQRTEP 290
A+ + T F +G+ I G++ T P
Sbjct: 302 AALAIQMGNTRFLFGKPIKCSWGSKPTPP 330
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV N+ + L +LF G + ++ R E G+V +SA AI L
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRK----EKSSYGFVDYFDRSSAAIAIVTL 103
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G ++ G+ ++V ++ +R D + + ++VG+L+ V
Sbjct: 104 NGRNIFGQSIKVNWAYTRG-QREDTSGH-----------------FHIFVGDLSPEVTDA 145
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTI 279
L F + + RV+ D+K G++R + F+SF ++ E +A++ L G R I
Sbjct: 146 TLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQI 202
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++V NL S + L D F +GT++S +V+ ++ G+S G G+V ++ SAK A
Sbjct: 13 GFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCA 71
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I LDG + ++ V + + R + + N SPK T +YV NL
Sbjct: 72 IEKLDGMLIKDKKAFVGYFI----RRQERSEN-----GSPKFT-------NVYVKNLLET 115
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRT 278
E L+ F +G + S ++ D + G ++ + F++F+S AA+ LNGT
Sbjct: 116 DTDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGK 174
Query: 279 IVVREGAQR 287
++ AQR
Sbjct: 175 VLYVGRAQR 183
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L LF YG I S + ++ E G S+ G+V +S +SA +A+ L
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G+ ++ + ER +A A KR + + LY+ NL + E
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCER-EAELRAKFEQEKIKRYEKLQGAN-LYLKNLDESINDE 223
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVRE 283
+L+ F FG + S +V+ D G ++ + F++F + E A++ + G+ +
Sbjct: 224 KLKEMFSEFGTITSCKVMFD-AHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVV 282
Query: 284 GAQRTE 289
AQR E
Sbjct: 283 VAQRKE 288
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 11/183 (6%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + + L + F YG +I + R+ TG +RG G+V+ A+ I
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI- 64
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPK--RTFYYEAPHKLYVGNLARV 219
+D + GR + K +V ++ + N G + SP RT K++VG L
Sbjct: 65 -IDKHIIDGRTVEAKKAVPRD-DQQNINRQTGSVQGSPGPGRT------KKIFVGGLPST 116
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
+ + +F +FG + V V++D + R + F++++SE D + E G+ +
Sbjct: 117 ITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
Query: 280 VVR 282
V+
Sbjct: 177 EVK 179
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 11/183 (6%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + + L + F YG +I + R+ TG +RG G+V+ A+ I
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI- 64
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPK--RTFYYEAPHKLYVGNLARV 219
+D + GR + K +V ++ + N G + SP RT K++VG L
Sbjct: 65 -IDKHIIDGRTVEAKKAVPRD-DQQNINRQTGSVQGSPGPGRT------KKIFVGGLPST 116
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
+ + +F +FG + V V++D + R + F++++SE D + E G+ +
Sbjct: 117 ITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
Query: 280 VVR 282
V+
Sbjct: 177 EVK 179
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 9/195 (4%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V + R L F YG ++ +S + T RG G+V I+SA +A+
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ 69
Query: 162 ALDGSDVGGRELRVKFSVEMS--LERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
D + GR++ V+ ++ S L++ G Y+ + + K++VG L
Sbjct: 70 --DTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPAN 127
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-----SLNGTEF 274
+ E+ + +F RFG + V V+ D + R + F++F+SE + M LNG +
Sbjct: 128 MSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQV 187
Query: 275 YGRTIVVREGAQRTE 289
+ V REG +E
Sbjct: 188 EVKRAVPREGNAGSE 202
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 7/216 (3%)
Query: 67 PEAVNGEKSLNTQNDDVFKNXXXXXXXXXXXXXGPCEIYVCNLPRSCNAAHLLDLFKPYG 126
PE GE+ ++ F++ ++ +P + + F G
Sbjct: 167 PERDRGERDFENRDGRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAG 226
Query: 127 TIISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERT 186
+ V + + + S+G GY+ S AIA L G + G+ + VK S E
Sbjct: 227 KVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVMVKPS-EAEKNLV 284
Query: 187 DANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQ 246
+NA++G P Y KLYVGNL + LR F FG + V++ D +
Sbjct: 285 QSNASSGAAVVGP----YGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMET 340
Query: 247 GKARVYAFLSFESEAERDAAMSLNGT-EFYGRTIVV 281
G + + F+ F AA SLNG E GRTI V
Sbjct: 341 GHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKV 376
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +I++ L R A + F YG I + ++ +TG+ RG G++ + I
Sbjct: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVI 103
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
+ + S ++ ++RT G K K++VG + V
Sbjct: 104 ----------EDSHIINSKQVEIKRTIPRGAVGSKDFRTK---------KIFVGGIPSNV 144
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSL-NGTEFYGRTI 279
++ R+ F R+G V +++ D ++R + F++F++E D +S+ N EF G +
Sbjct: 145 TEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQV 204
Query: 280 VVRE 283
+++
Sbjct: 205 EIKK 208
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 207 APHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAA 266
+ KL++G L+ V + LR+ F +G+V+ RV+ DR+ G++R + F++F SE +A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 267 MSLNGTEFYGRTIVV 281
+S++G + GR I V
Sbjct: 94 LSMDGQDLNGRNIRV 108
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
++++ L + + L D F YG ++ V + ETG SRG G+V S SA SA+
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 161 AALDGSDVGGRELRVKFS 178
++DG D+ GR +RV ++
Sbjct: 95 -SMDGQDLNGRNIRVSYA 111
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 16/179 (8%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++YV +P + + F+ GTI + +TG+ RG + ++ +AK A+ A
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRAL-A 279
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
LDG+D+GG L+++ + T A EM E +++YVG+L+ +
Sbjct: 280 LDGADMGGLFLKIQ-----PCKATQATRFTPEM---------KEGYNRIYVGSLSWEITE 325
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
E+LR F NV ++R+ D++ G+ R YA + F A++L+ + +GR + +
Sbjct: 326 EELRKFFSNC-NVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALDQSVLFGRPVRI 383
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-S 268
KLYVG ++ LR F R+G+VL RV+ DR+QG+++ + F++F + E AA+ +
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 269 LNGTEFYGRTIVVREGAQR 287
++ E +GRT+ V +R
Sbjct: 101 MDNQELHGRTVRVNYAQER 119
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
++YV + S + A L + F YG ++ V + E G S+G G+V + A +A+
Sbjct: 39 SAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAAL 98
Query: 161 AALDGSDVGGRELRVKFSVE 180
A+D ++ GR +RV ++ E
Sbjct: 99 QAMDNQELHGRTVRVNYAQE 118
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 19/168 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ +L + +L + F G + SV+V RN +T +S G G++ S A+ +
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 164 DGSDV--GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G+ + GG+ R+ ++ S E+ + SP T ++VG+LA V
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDD--------SPDYT--------IFVGDLAADVS 179
Query: 222 PEQLRNHF-IRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS 268
L F R+ +V +V+ DR G+ + Y F+ F E+E+ AM+
Sbjct: 180 DHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMT 227
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 105 YVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAALD 164
YV NL + L +LF G +++V V ++ T + +G G+V S A AI L+
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 165 GSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQ 224
+ G+ +RV + D AN L++GNL V +
Sbjct: 88 MIKLYGKPIRVN-KASQDKKSLDVGAN-------------------LFIGNLDPDVDEKL 127
Query: 225 LRNHFIRFGNVLS-VRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRTIVV 281
L + F FG +++ +++ D G +R + F+S++S EA A ++NG R I V
Sbjct: 128 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIIS-VEVSRNAETGESRGCGYVIMESINSAKSAI 160
+++ NL + L D F +G I++ ++ R+ +TG SRG G++ +S ++ SAI
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLY 212
A++G + R++ V ++ + + A + A+ T PH L+
Sbjct: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLF 223
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++ +P + + F G + V + + + S+G GY+ S AIA L
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-L 275
Query: 164 DGSDVGGRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
G + G+ + VK S E +L +++ A + Y KLYVGNL +
Sbjct: 276 SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP-----YGAVDRKLYVGNLHFNMTE 330
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGT-EFYGRTIVV 281
QLR F FG V V++ D + G + + F+ F AA SLNG E GRTI V
Sbjct: 331 SQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++ +P + + F G + V + + + S+G GY+ S AIA L
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-L 275
Query: 164 DGSDVGGRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
G + G+ + VK S E +L +++ A + Y KLYVGNL +
Sbjct: 276 SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP-----YGAVDRKLYVGNLHFNMTE 330
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGT-EFYGRTIVV 281
QLR F FG V V++ D + G + + F+ F AA SLNG E GRTI V
Sbjct: 331 SQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++ +P + + F G + V + + + S+G GY+ S AIA L
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-L 275
Query: 164 DGSDVGGRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
G + G+ + VK S E +L +++ A + Y KLYVGNL +
Sbjct: 276 SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP-----YGAVDRKLYVGNLHFNMTE 330
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGT-EFYGRTIVV 281
QLR F FG V V++ D + G + + F+ F AA SLNG E GRTI V
Sbjct: 331 SQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V L S + L D F +G + V + + ++G +RG G+VI + ++AKSA A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 163 LDGSDVGGRELRVKFSVE 180
+DG + GR LR+ F++E
Sbjct: 97 MDGKALLGRPLRINFALE 114
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 209 HKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAAM 267
+KL+VG L+ V + L++ F FG+V VR+++D+ G+AR + F+ F +E A + A
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 268 SLNGTEFYGRTIVV 281
+++G GR + +
Sbjct: 96 AMDGKALLGRPLRI 109
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I+V +L A L F Y + V + +TG SRG G+V S A+SA
Sbjct: 145 GHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSA 204
Query: 160 IAALDGSDVGGRELRVKFSVEMS--------------LERTDANANAGEMYAS---PKRT 202
I L G +G R++R ++ + + +E T+ ++ G+ +S P+
Sbjct: 205 INDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENN 264
Query: 203 FYYEAPHKLYVGNLARVVKPEQLRNHF--IRFGNVLSVRVLHDRKQGKARVYAFLSFESE 260
Y +YVGNL L HF + G + VRV D+ + F+ + +
Sbjct: 265 PQYTT---VYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKG------FGFVRYSTH 315
Query: 261 AERDAAMSLNGTEFY--GRTIVVREGAQRTEP 290
AE A+ + + Y G+ I G++ T P
Sbjct: 316 AEAALAIQMGNAQSYLCGKIIKCSWGSKPTPP 347
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERD 264
+ ++ +VG LA + L F +FG + +V++DR+ G++R + F++F E ++ RD
Sbjct: 5 DVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRD 64
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A +NG + GR I V E
Sbjct: 65 AIEEMNGQDIDGRNITVNE 83
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
+ ++ +VG LA E L F ++G ++ ++++DR+ G++R + F++F E + RD
Sbjct: 5 DVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRD 64
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A +NG + GR I V E
Sbjct: 65 AIEGMNGQDMDGRNITVNE 83
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ + S + L + F YG ++ + + ETG SRG G++ S+ A SAI A
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 163 LDGSDVGGRELRVKFSVE 180
LDG D+ GR +RV ++ E
Sbjct: 103 LDGQDLHGRRVRVNYANE 120
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-S 268
KL++G ++ LR F R+G VL R++ DR+ G++R + F++F S E +A+ +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 269 LNGTEFYGRTIVVREGAQR 287
L+G + +GR + V +R
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMES---INSAKS 158
++++ + N L + F YG +++ V R TG+ RG G+V+ ++
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 159 AIAALDGSDVGGRELRVKFSVEMSLERTDA-------NANAGEMYASPKRTFYYEAPHKL 211
+DG V + + ++S+ + N G M RT K+
Sbjct: 66 DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNM-----RT------KKI 114
Query: 212 YVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNG 271
+VG L + E+ R +F +G+V V V++D+ G+ R + F++F++E D +
Sbjct: 115 FVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTF 174
Query: 272 TEFYGRTIVVR 282
+ G+ + V+
Sbjct: 175 HDLNGKQVEVK 185
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMES---INSAKS 158
++++ + N L + F YG +++ V R TG+ RG G+V+ ++
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 159 AIAALDGSDVGGRELRVKFSVEMSLERTDA-------NANAGEMYASPKRTFYYEAPHKL 211
+DG V + + ++S+ + N G M RT K+
Sbjct: 66 DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNM-----RT------KKI 114
Query: 212 YVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNG 271
+VG L + E+ R +F +G+V V V++D+ G+ R + F++F++E D +
Sbjct: 115 FVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTF 174
Query: 272 TEFYGRTIVVR 282
+ G+ + V+
Sbjct: 175 HDLNGKQVEVK 185
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V +P+ LL LFK + + V + ++ T SRGC +VI S + A A+ A
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 163 LDGSDV---GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
L+VK++ + LER + HKL++G L +
Sbjct: 77 CHNKKTLPGASSPLQVKYA-DGELERLE---------------------HKLFIGMLPKN 114
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNG 271
+ ++ F ++G + +++L +Q AFL +E++ + AA+ ++NG
Sbjct: 115 ISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAING 167
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 48/73 (65%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ ++P+ L + F+P+G ++S +V + TG S+ G+V +S +A+SAI+ +
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 164 DGSDVGGRELRVK 176
+G +GG++L+V+
Sbjct: 411 NGCQLGGKKLKVQ 423
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G + V + S + L + F YG ++ + + ETG SRG G++ S+ A SA
Sbjct: 48 GILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSA 107
Query: 160 IAALDGSDVGGRELRVKFSVE 180
I ALDG D+ GR +RV ++ E
Sbjct: 108 IQALDGQDLHGRRVRVNYANE 128
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 195 MYASPKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAF 254
M ++P + L V ++ LR F R+G VL R++ DR+ G++R + F
Sbjct: 36 MCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGF 95
Query: 255 LSFESEAERDAAM-SLNGTEFYGRTIVVREGAQR 287
++F S E +A+ +L+G + +GR + V +R
Sbjct: 96 ITFNSVEEASSAIQALDGQDLHGRRVRVNYANER 129
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 28/206 (13%)
Query: 104 IYVCNLPRSCNAAHLLDLFK------------PYGTIISVEVSRNAETGESRGCGYVIME 151
+YV LP + N + F P +++V ++ + + +V M
Sbjct: 242 VYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHD------KKFAFVEMR 295
Query: 152 SINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYASPKRTF 203
S+ A +A+A LDG G ++V+ + + + + N N G + +P
Sbjct: 296 SVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAG 354
Query: 204 YYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAER 263
E P +++VG L Q+R FG + ++ DR+ G ++ YAF + A
Sbjct: 355 GLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVT 414
Query: 264 D-AAMSLNGTEFYGRTIVVREGAQRT 288
D A +LNG + +T+ VR Q T
Sbjct: 415 DIACAALNGIKMGDKTLTVRRANQGT 440
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
E+++ LPR + + +L +P G I+ +++ ++ ETGES+G +V ++ A+ AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+ + G+ LR S E H+L++GN+ +
Sbjct: 164 DIHNKEFKGKTLRCLLS---------------------------ETKHRLFIGNIPKTWT 196
Query: 222 PEQLRNHFIRFG-NVLSVRVLHD-RKQGKARVYAFLSFESEAERD---AAMSLNGTEFYG 276
++ R G V S+ ++ D + Q + R +AF+ + + A D MS G + G
Sbjct: 197 EDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDG 256
Query: 277 RTIVVREGAQRTEP 290
T V +T P
Sbjct: 257 ITPTVTWADPKTSP 270
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
E+++ LPR + + +L +P G I+ +++ ++ ETGES+G +V ++ A+ AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+ + G+ LR S E H+L++GN+ +
Sbjct: 164 DIHNKEFKGKTLRCLLS---------------------------ETKHRLFIGNIPKTWT 196
Query: 222 PEQLRNHFIRFG-NVLSVRVLHD-RKQGKARVYAFLSFESEAERD---AAMSLNGTEFYG 276
++ R G V S+ ++ D + Q + R +AF+ + + A D MS G + G
Sbjct: 197 EDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDG 256
Query: 277 RTIVVREGAQRTEP 290
T V +T P
Sbjct: 257 ITPTVTWADPKTSP 270
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
E+++ LPR + + +L +P G I+ +++ ++ ETGES+G +V ++ A+ AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+ + G+ LR S E H+L++GN+ +
Sbjct: 164 DIHNKEFKGKTLRCLLS---------------------------ETKHRLFIGNIPKTWT 196
Query: 222 PEQLRNHFIRFG-NVLSVRVLHD-RKQGKARVYAFLSFESEAERD---AAMSLNGTEFYG 276
++ R G V S+ ++ D + Q + R +AF+ + + A D MS G + G
Sbjct: 197 EDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDG 256
Query: 277 RTIVVREGAQRTEP 290
T V +T P
Sbjct: 257 ITPTVTWADPKTSP 270
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A+A LDG G ++V+ + + + + N N G + S
Sbjct: 341 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLS 399
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + P +++VG + Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 400 PGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 459
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRTEP 290
A D A +LNG + +T+ VR Q T P
Sbjct: 460 DLAVTDIACAALNGIKMGDKTLTVRRANQNTNP 492
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A+A LDG G ++V+ + + + + N N G + S
Sbjct: 339 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLS 397
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + P +++VG + Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 398 PGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 457
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRTEP 290
A D A +LNG + +T+ VR Q T P
Sbjct: 458 DLAVTDIACAALNGIKMGDKTLTVRRANQNTNP 490
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V +P+ LL LFK + + V + ++ T SRGC +VI S + A A+ A
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 163 LDGSDV---GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
L+VK++ + LER + HKL++G L +
Sbjct: 77 CHNKKTLPGASSPLQVKYA-DGELERLE---------------------HKLFIGMLPKN 114
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNG 271
+ ++ F ++G + +++L +Q ++ AFL +E++ + AA+ ++NG
Sbjct: 115 ISEVEVSALFSKYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAING 166
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 48/73 (65%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ ++P+ L + F+P+G ++S +V + TG S+ G+V +S +A+SAI+ +
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 164 DGSDVGGRELRVK 176
+G +GG++L+V+
Sbjct: 410 NGCQLGGKKLKVQ 422
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-S 268
KL++G ++ LR F R+G+VL +++ DR G++R + F++F + E +A+ +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 269 LNGTEFYGRTIVVREGAQRTEP 290
++ E GRT+ V +R P
Sbjct: 101 MDNKELDGRTVRVNYATERARP 122
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + S + L + F YG ++ ++ + +TG SRG G++ + A SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 162 ALDGSDVGGRELRVKFSVE 180
A+D ++ GR +RV ++ E
Sbjct: 100 AMDNKELDGRTVRVNYATE 118
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-S 268
KL++G ++ LR F R+G+VL +++ DR G++R + F++F + E +A+ +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 269 LNGTEFYGRTIVVREGAQRTEP 290
++ E GRT+ V +R P
Sbjct: 101 MDNKELDGRTVRVNYATERARP 122
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + S + L + F YG ++ ++ + +TG SRG G++ + A SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 162 ALDGSDVGGRELRVKFSVE 180
A+D ++ GR +RV ++ E
Sbjct: 100 AMDNKELDGRTVRVNYATE 118
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V +P+ LL LFK + + V + ++ T SRGC +VI S + A A+ A
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 163 LDGSDV---GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
L+VK++ + LER + HKL++G L +
Sbjct: 77 CHNKKTLPGASSPLQVKYA-DGELERLE---------------------HKLFIGMLPKN 114
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNG 271
+ ++ F ++G + +++L +Q ++ AFL +E++ + AA+ ++NG
Sbjct: 115 ISEVEVSALFSKYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAING 166
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 207 APHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAA 266
+ KL++G L+ V + LR+ F +G+V+ RV+ DR+ G++R + F++F SE +A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 267 MSLNG 271
+S++G
Sbjct: 94 LSMDG 98
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 33/185 (17%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
I+ N C + L LF+ YG + V++ G ++ ME A++AI AL
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKVDRVDMKA--------GFAFIYMEDERDAEAAIRAL 55
Query: 164 DGSDVG--GRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHK-LYVGNLARV- 219
D + G GR LRV+++ + R A PKR+ P K L+V N
Sbjct: 56 DRIEFGRKGRRLRVEWTKQERGVRRPAE--------RPKRSSANARPSKTLFVINFDTYQ 107
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSL---NGTEFYG 276
+ L HF +G ++SVR+ + +AF+ +ESE DA +L N ++
Sbjct: 108 TRTRDLERHFEPYGKIVSVRIRKN--------FAFVQYESED--DACKALEATNNSKLMD 157
Query: 277 RTIVV 281
R I V
Sbjct: 158 RVISV 162
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + R+ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + R+ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + R+ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + R+ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A+A LDG G ++V+ + + + + N N G + S
Sbjct: 339 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLS 397
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + P +++VG + Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 398 PGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 457
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRTEP 290
A D A +LNG + +T+ VR Q T P
Sbjct: 458 DLAVTDIACAALNGIKMGDKTLTVRRANQNTNP 490
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A+A LDG G ++V+ + + + + N N G + S
Sbjct: 341 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLS 399
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + P +++VG + Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 400 PGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 459
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRTEP 290
A D A +LNG + +T+ VR Q T P
Sbjct: 460 DLAVTDIACAALNGIKMGDKTLTVRRANQNTNP 492
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A+A LDG G ++V+ + + + + N N G + S
Sbjct: 339 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLS 397
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + P +++VG + Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 398 PGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 457
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRTEP 290
A D A +LNG + +T+ VR Q T P
Sbjct: 458 DLAVTDIACAALNGIKMGDKTLTVRRANQNTNP 490
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A+A LDG G ++V+ + + + + N N G + S
Sbjct: 341 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLS 399
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + P +++VG + Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 400 PGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 459
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRTEP 290
A D A +LNG + +T+ VR Q T P
Sbjct: 460 DLAVTDIACAALNGIKMGDKTLTVRRANQNTNP 492
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A+A LDG G ++V+ + + + + N N G + S
Sbjct: 341 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLS 399
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + P +++VG + Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 400 PGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 459
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRTEP 290
A D A +LNG + +T+ VR Q T P
Sbjct: 460 DLAVTDIACAALNGIKMGDKTLTVRRANQNTNP 492
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 35/178 (19%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L+DLF YG + SV + +R +V + I+ AK+A AL
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
G + G LR++F A P +T +L+VG ++ V E
Sbjct: 83 QGFNFRGNSLRIEF-------------------ARPAKTC-----KQLWVGGISPAVTKE 118
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
L F +FG V + DR F + + + A +NG G I V
Sbjct: 119 DLEADFRKFGKVEDFKFFRDR---NTACVEFFNLDDAIQ--AMKIMNGKHIGGENIRV 171
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 35/178 (19%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L+DLF YG + SV + +R +V + I+ AK+A AL
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
G + G LR++F A P +T +L+VG ++ V E
Sbjct: 83 QGFNFRGNSLRIEF-------------------ARPAKTC-----KQLWVGGISPAVTKE 118
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
L F +FG V + DR F + + + A +NG G I V
Sbjct: 119 DLEADFRKFGKVEDFKFFRDR---NTACVEFFNLDDAIQ--AMKIMNGKHIGGENIRV 171
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
+ ++ +VG LA E L F ++G ++ ++++DR+ G++R + F++F +E + D
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A ++NG + GR I V +
Sbjct: 63 AIEAMNGQDLDGRNITVNQ 81
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
+ ++ +VG LA E L F ++G ++ ++++DR+ G++R + F++F +E + D
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A ++NG + GR I V +
Sbjct: 63 AIEAMNGQDLDGRNITVNQ 81
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-S 268
KL+VG ++ + L + F ++G VL R++ DR+ G+++ + F+++ + E +A+ +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 269 LNGTEFYGRTIVVR 282
L+G + YGR + V
Sbjct: 105 LDGQDLYGRRVGVN 118
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V + + + L D F YG ++ + + E+G S+G G+V ++ A SAI
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 162 ALDGSDVGGRELRVKFSVE 180
ALDG D+ GR + V F+ E
Sbjct: 104 ALDGQDLYGRRVGVNFANE 122
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-S 268
KL+VG ++ + L + F ++G VL R++ DR+ G+++ + F+++ + E +A+ +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 269 LNGTEFYGRTIVVR 282
L+G + YGR + V
Sbjct: 105 LDGQDLYGRRVGVN 118
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V + + + L D F YG ++ + + E+G S+G G+V ++ A SAI
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 162 ALDGSDVGGRELRVKFSVE 180
ALDG D+ GR + V F+ E
Sbjct: 104 ALDGQDLYGRRVGVNFANE 122
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + ++ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + ++ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + ++ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ + + ++ TGESRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
I++ +L + L + F G + S +V RN +TG+S G G+V + A+ +
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G+ + + + ++ A GE +R+ + ++VG+LA V
Sbjct: 178 NGTMMPNTDQAFR----LNWATFSAAGGGGE-----RRSSEATSDLSVFVGDLAIDVTDA 228
Query: 224 QLRNHFI-RFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNG 271
L+ F +F ++ +V+ D G+++ Y F+ F E+ER AM+ +NG
Sbjct: 229 MLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNG 278
>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 29/183 (15%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
I+ NL + + LF+ YG I V++ G ++ ME A+ AI L
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKIDRVDLKS--------GFAFIYMEDERDAEYAIRRL 55
Query: 164 DGSDVG--GRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV- 219
D ++ G GR +RV+++ E R+ ++ P +T L++ N V
Sbjct: 56 DQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKT--------LFIINFDPVH 107
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRT 278
+ L HF +G + ++R+ R +AF+ FE++ E A+ + N ++F R
Sbjct: 108 TRTRDLERHFDPYGKISNLRIR--------RNFAFIQFETQEEATKALEATNLSKFMDRV 159
Query: 279 IVV 281
I V
Sbjct: 160 ITV 162
>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 29/183 (15%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
I+ NL + + LF+ YG I V++ G ++ ME A+ AI L
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKIDRVDLKS--------GFAFIYMEDERDAEYAIRRL 55
Query: 164 DGSDVG--GRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV- 219
D ++ G GR +RV+++ E R+ ++ P +T L++ N V
Sbjct: 56 DQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKT--------LFIINFDPVH 107
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRT 278
+ L HF +G + ++R+ R +AF+ FE++ E A+ + N ++F R
Sbjct: 108 TRTRDLERHFDPYGKISNLRIR--------RNFAFIQFETQEEATKALEATNLSKFMDRV 159
Query: 279 IVV 281
I V
Sbjct: 160 ITV 162
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 143 RGCGYVIMESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRT 202
R + E++ + K+AIA+ SDV + K +V AG+ + P
Sbjct: 77 RDAQIITPEALENVKAAIAS---SDVEHKAETKKKAVPRKA--------AGQAWEDPILA 125
Query: 203 FYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE 262
+ E ++L+ G+L V + L F RF + RV+ D++ GK + Y F+SF + A+
Sbjct: 126 EWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPAD 185
Query: 263 RDAAMS-LNGTEFYGRTIVVREGAQR 287
AA+ +NG R I +R+ R
Sbjct: 186 LAAALKEMNGKYVGNRPIKLRKSKWR 211
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ L + N L D F+ +G II V+V N TGES+G G+V S +A +A
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 163 LDGSDVGGRELRVKFS 178
L G V GR +RV ++
Sbjct: 94 LHGQIVDGRRIRVGYA 109
>Medtr5g089300.1 | Pre-mRNA branch site p14-like protein | HC |
chr5:38804152-38805669 | 20130731
Length = 124
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP + + + D+F YG I + + N +T RG +V+ E I AK+A+ L
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDAKTAVDHL 77
Query: 164 DGSDVGGRELRVKFSVEMSLER 185
G +V R L V + + + +
Sbjct: 78 SGFNVANRYLIVLYYQQAKMSK 99
>Medtr5g089300.2 | Pre-mRNA branch site p14-like protein | HC |
chr5:38804088-38805909 | 20130731
Length = 124
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP + + + D+F YG I + + N +T RG +V+ E I AK+A+ L
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDAKTAVDHL 77
Query: 164 DGSDVGGRELRVKFSVEMSLER 185
G +V R L V + + + +
Sbjct: 78 SGFNVANRYLIVLYYQQAKMSK 99
>Medtr5g089300.3 | Pre-mRNA branch site p14-like protein | HC |
chr5:38804135-38805809 | 20130731
Length = 124
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP + + + D+F YG I + + N +T RG +V+ E I AK+A+ L
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDAKTAVDHL 77
Query: 164 DGSDVGGRELRVKFSVEMSLER 185
G +V R L V + + + +
Sbjct: 78 SGFNVANRYLIVLYYQQAKMSK 99
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++V +L A L F Y T V + +TG S+G G+V A+SA
Sbjct: 143 GHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSA 202
Query: 160 IAALDGSDVGGRELRVKFSV---------------EMSLERTDANANAGEMYASPKRTFY 204
I + G +G R++R ++ + ++ T+ +++ G+ ++
Sbjct: 203 INDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPEN 262
Query: 205 YEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERD 264
+ +YVGNL V +L F + L VL + + + + F+ + + E
Sbjct: 263 NPSYTTVYVGNLPHDVTQAELHCQF----HALGAGVLEEVRVQSGKGFGFVRYNTHEEAA 318
Query: 265 AAMSL-NGTEFYGRTIVVREGAQRTEP 290
A+ + NG G+T+ G++ T P
Sbjct: 319 MAIQMANGRPVRGKTMKCSWGSKPTPP 345
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++V +L A L F Y T V + +TG S+G G+V A+SA
Sbjct: 143 GHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSA 202
Query: 160 IAALDGSDVGGRELRVKFSV---------------EMSLERTDANANAGEMYASPKRTFY 204
I + G +G R++R ++ + ++ T+ +++ G+ ++
Sbjct: 203 INDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPEN 262
Query: 205 YEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERD 264
+ +YVGNL V +L F + L VL + + + + F+ + + E
Sbjct: 263 NPSYTTVYVGNLPHDVTQAELHCQF----HALGAGVLEEVRVQSGKGFGFVRYNTHEEAA 318
Query: 265 AAMSL-NGTEFYGRTIVVREGAQRTEP 290
A+ + NG G+T+ G++ T P
Sbjct: 319 MAIQMANGRPVRGKTMKCSWGSKPTPP 345
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++V +L A L F Y T V + +TG S+G G+V A+SA
Sbjct: 127 GHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSA 186
Query: 160 IAALDGSDVGGRELRVKFSV---------------EMSLERTDANANAGEMYASPKRTFY 204
I + G +G R++R ++ + ++ T+ +++ G+ ++
Sbjct: 187 INDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPEN 246
Query: 205 YEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERD 264
+ +YVGNL V +L F + L VL + + + + F+ + + E
Sbjct: 247 NPSYTTVYVGNLPHDVTQAELHCQF----HALGAGVLEEVRVQSGKGFGFVRYNTHEEAA 302
Query: 265 AAMSL-NGTEFYGRTIVVREGAQRTEP 290
A+ + NG G+T+ G++ T P
Sbjct: 303 MAIQMANGRPVRGKTMKCSWGSKPTPP 329
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 34/179 (18%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V ++PR+ + LF+ +G ++ V + ++ +TG+ +GC ++ + A AI
Sbjct: 88 AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 162 ALDG-----SDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNL 216
AL VG ++R YA +R +KL+VG+L
Sbjct: 148 ALHNRHTLPGGVGPIQVR---------------------YADGERERLGAVEYKLFVGSL 186
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM----SLNG 271
+ +++ F ++G + V ++ D Q ++R F+ + + RD A+ +LNG
Sbjct: 187 NKQASVKEVEEVFSKYGRIEDVYLMRD-DQKQSRGCGFVKY---SHRDMALAAINALNG 241
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++ V +P + L + YG + V + TG SRG GYV S++ AK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE---V 61
Query: 163 LDGSDV-GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L G V G R L VK + EM A K+ +++V + V
Sbjct: 62 LSGEHVLGDRMLEVKVATPKE-----------EMRAPAKKV------TRIFVARIPPSVT 104
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
E R+HF ++G++ + + D+ R F++F + + MS E G +VV
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVV 163
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++ V +P + L + YG + V + TG SRG GYV S++ AK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE---V 61
Query: 163 LDGSDV-GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L G V G R L VK + EM A K+ +++V + V
Sbjct: 62 LSGEHVLGDRMLEVKVATPKE-----------EMRAPAKKV------TRIFVARIPPSVT 104
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
E R+HF ++G++ + + D+ R F++F + + MS E G +VV
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVV 163
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++ V +P + L + YG + V + TG SRG GYV S++ AK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE---V 61
Query: 163 LDGSDV-GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L G V G R L VK + EM A K+ +++V + V
Sbjct: 62 LSGEHVLGDRMLEVKVATPKE-----------EMRAPAKKV------TRIFVARIPPSVT 104
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
E R+HF ++G++ + + D+ R F++F + + MS E G +VV
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVV 163
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++ V +P + L + YG + V + TG SRG GYV S++ AK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE---V 61
Query: 163 LDGSDV-GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L G V G R L VK + EM A K+ +++V + V
Sbjct: 62 LSGEHVLGDRMLEVKVATPKE-----------EMRAPAKKV------TRIFVARIPPSVT 104
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
E R+HF ++G++ + + D+ R F++F + + MS E G +VV
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVV 163
>Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:49138254-49142925 | 20130731
Length = 314
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P + V NLP L F+ YG + V + RN TGE RG G+V A A
Sbjct: 47 PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAK 106
Query: 161 AALDGSDVGGRELRVKFSVE 180
L+ + +GGRE+R+ F+ E
Sbjct: 107 QQLNHTIIGGREIRIVFAEE 126
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V L L +F YG + V + TG S+G G+V+ ++ A A+
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLAL-- 134
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
+E K M++ + A + G +S K++VGN+ V
Sbjct: 135 --------KEPSKKIDGRMTVTQLAAAGSTGGDVSS----------RKVFVGNVPFEVSA 176
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE 260
E L + F ++G + + D+ GK R +AF +++E
Sbjct: 177 ESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTE 214
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPY---GTIISVEVSRNAETGE--SRGCGYVIMESINSAKS 158
++V NL L + F + G I+SV+V ++ + G+ S G G+V +S +A S
Sbjct: 643 LFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATS 702
Query: 159 AIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLAR 218
L G+ + G L ++ ++ D K+ ++ KL V N+A
Sbjct: 703 VCNDLQGTVLDGHALILQLC---HVKNDDDKVQ--------KKVEKDKSSTKLLVKNVAF 751
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE-RDAAMSLNGTEFYGR 277
+ LR F FG + S+R+ K G R +AF+ + ++ E ++A +L+ T YGR
Sbjct: 752 EATEKDLRQLFSPFGQIKSLRL--PMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGR 809
Query: 278 TIVVREGAQ 286
+V+ +
Sbjct: 810 HLVIERAKE 818
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 9/182 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFK-PYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
I+V +L LL+ F Y ++ + +V +A TG S+G G+V A+
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
++G R +R+ + ++ G+ +P ++ ++VG L
Sbjct: 249 MNGVFCSSRAMRIGAATP---RKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATA 305
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVR 282
E LR F ++G ++SV++ GK + + + AE +A LNGT +T+ +
Sbjct: 306 EDLRQPFSQYGEIVSVKI----PVGKGCGFVQFANRNNAE-EALQKLNGTTVGKQTVRLS 360
Query: 283 EG 284
G
Sbjct: 361 WG 362
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +I++ L + + F+ YG I + ++ TG RG G++ + I
Sbjct: 17 PGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVI 76
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
+E + ++ ++RT AS F K++VG + V
Sbjct: 77 ----------QENHIINDKQVEIKRTIPKG------ASQTNDF---KTKKIFVGGIPATV 117
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS 268
++L+ F + GNV+ ++ D ++R + F+ F+S+ D ++
Sbjct: 118 SEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLA 165
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++YV +PR+ + A + +F+ YGTI+ V + R+ TG +G V + + A A
Sbjct: 72 GHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMA 131
Query: 160 IAALDGSDVGGRE---LRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNL 216
I AL E + V+F+ +R + + +R E K+YVG +
Sbjct: 132 IKALSNQYTFPGESSPVVVRFA-----DRKRERFGLRDFCQNMERRDPPEVVGKVYVGCI 186
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVY 252
+++ F +G++ V VL +R G + Y
Sbjct: 187 NNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFY 222
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++YV +PR+ + A + +F+ YGTI+ V + R+ TG +G V + + A A
Sbjct: 72 GHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMA 131
Query: 160 IAALDGSDVGGRE---LRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNL 216
I AL E + V+F+ +R + + +R E K+YVG +
Sbjct: 132 IKALSNQYTFPGESSPVVVRFA-----DRKRERFGLRDFCQNMERRDPPEVVGKVYVGCI 186
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVY 252
+++ F +G++ V VL +R G + Y
Sbjct: 187 NNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFY 222
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 108 NLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGSD 167
N+P S + LF+ YG ++ VE+S + +RG +V M S A A+ +L +
Sbjct: 95 NVPWSSTTEDVRSLFEKYGKVLHVELSMYNK-NRNRGLAFVEMGSPEEASEALNSLQSYE 153
Query: 168 VGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRN 227
GR + ++++ + Y L+V N + + ++
Sbjct: 154 FDGRIINIQYAKPKKEKIPPPVERKPITY-------------NLFVANFPYEARSKDVKE 200
Query: 228 HFIR-FGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVV 281
F G V+S V+ + Y F+S++S+ E D A++ G F GR + V
Sbjct: 201 FFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRV 256
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 108 NLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGSD 167
N+P S + LF+ YG ++ VE+S + +RG +V M S A A+ +L +
Sbjct: 95 NVPWSSTTEDVRSLFEKYGKVLHVELSMYNK-NRNRGLAFVEMGSPEEASEALNSLQSYE 153
Query: 168 VGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRN 227
GR + ++++ + Y L+V N + + ++
Sbjct: 154 FDGRIINIQYAKPKKEKIPPPVERKPITY-------------NLFVANFPYEARSKDVKE 200
Query: 228 HFIR-FGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVV 281
F G V+S V+ + Y F+S++S+ E D A++ G F GR + V
Sbjct: 201 FFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRV 256