Miyakogusa Predicted Gene
- Lj3g3v2484120.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2484120.1 Non Characterized Hit- tr|I1KHQ5|I1KHQ5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,73.2,0,no
description,Nucleotide-binding, alpha-beta plait; seg,NULL; RRM_1,RNA
recognition motif domain; R,CUFF.44095.1
(280 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 358 2e-99
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 358 3e-99
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 186 2e-47
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 186 3e-47
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 172 3e-43
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 172 3e-43
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 166 2e-41
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 163 2e-40
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 163 2e-40
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 162 3e-40
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 154 8e-38
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 141 8e-34
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 141 8e-34
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 88 1e-17
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 88 1e-17
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 5e-17
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 5e-17
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 5e-17
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 83 3e-16
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 83 4e-16
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 5e-15
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 5e-15
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 5e-15
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 5e-15
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 6e-15
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 7e-15
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 7e-15
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 2e-14
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 2e-14
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 2e-14
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 6e-13
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 6e-13
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 8e-13
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 9e-13
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 9e-12
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 7e-11
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 1e-10
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 1e-10
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 6e-10
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 56 3e-08
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 56 4e-08
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 4e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 4e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 4e-08
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 8e-08
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 1e-07
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 1e-07
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 1e-07
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 55 1e-07
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 54 1e-07
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 54 1e-07
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 54 2e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 53 4e-07
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 53 4e-07
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 52 8e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 52 9e-07
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 51 1e-06
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 51 2e-06
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 50 3e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 49 5e-06
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 358 bits (920), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 194/286 (67%), Positives = 215/286 (75%), Gaps = 12/286 (4%)
Query: 1 MSQQRQTQMMFGGGYN---NDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDK 57
MSQQRQ M+ G NDTTFTKLFVGGLAWETQRETMR YFEQFGEILEAVVITDK
Sbjct: 1 MSQQRQPHMVSGNNNQDQYNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDK 60
Query: 58 NTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRFR 117
TGRSKGYGFVTFKDPE+A+RACQNPSPVIDGRRANCN+ASLGANKN TLH+ GRFR
Sbjct: 61 YTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLTLHH--GRFR 118
Query: 118 PQPAVVASPAYHGSSSSTFFYQPTRQYTFPYSAYGYSGYSQETMYPTSYYGVYGVQQFPQ 177
P VV S YHG SSST F+QPTRQYTFPYSAYGYSGYSQ+T+YP +YY VYGVQQ+
Sbjct: 119 PPHGVVPSVPYHG-SSSTVFHQPTRQYTFPYSAYGYSGYSQDTLYPANYYNVYGVQQYSP 177
Query: 178 YYP---SSEAGGLIQNNYIYPFYGQYAQNIQAHGYGVQHPQMAQFPFLPQHYGSTGILSL 234
YYP +S A GL+QN +YP+YGQYAQNI HG+GVQ+PQM Q P LPQHYGS GIL++
Sbjct: 178 YYPAVGASGAMGLVQN--MYPYYGQYAQNIHGHGFGVQYPQMTQIPVLPQHYGSQGILTI 235
Query: 235 XXXXXXXXXXXXXXXXXXXXSTNVVIAEVGTSQASGTASEQNSTTS 280
+ V VGTSQASGT +EQ +TS
Sbjct: 236 PSSVTIPTISAVTATTTTIAAPVAV-TRVGTSQASGTDTEQQHSTS 280
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 194/287 (67%), Positives = 216/287 (75%), Gaps = 12/287 (4%)
Query: 1 MSQQRQTQMMFGGGYN---NDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDK 57
MSQQRQ M+ G NDTTFTKLFVGGLAWETQRETMR YFEQFGEILEAVVITDK
Sbjct: 1 MSQQRQPHMVSGNNNQDQYNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDK 60
Query: 58 NTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRFR 117
TGRSKGYGFVTFKDPE+A+RACQNPSPVIDGRRANCN+ASLGANKN TLH+ GRFR
Sbjct: 61 YTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLTLHH--GRFR 118
Query: 118 PQPAVVASPAYHGSSSSTFFYQPTRQYTFPYSAYGYSGYSQETMYPTSYYGVYGVQQFPQ 177
P VV S YHG SSST F+QPTRQYTFPYSAYGYSGYSQ+T+YP +YY VYGVQQ+
Sbjct: 119 PPHGVVPSVPYHG-SSSTVFHQPTRQYTFPYSAYGYSGYSQDTLYPANYYNVYGVQQYSP 177
Query: 178 YYP---SSEAGGLIQNNYIYPFYGQYAQNIQAHGYGVQHPQMAQFPFLPQHYGSTGILSL 234
YYP +S A GL+QN +YP+YGQYAQNI HG+GVQ+PQM Q P LPQHYGS GIL++
Sbjct: 178 YYPAVGASGAMGLVQN--MYPYYGQYAQNIHGHGFGVQYPQMTQIPVLPQHYGSQGILTI 235
Query: 235 -XXXXXXXXXXXXXXXXXXXXSTNVVIAEVGTSQASGTASEQNSTTS 280
+ V + VGTSQASGT +EQ +TS
Sbjct: 236 PSSVTIPTISAATVTATTTTIAAPVAVTRVGTSQASGTDTEQQHSTS 282
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 129/200 (64%), Gaps = 18/200 (9%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTT+TK+FVGGLAWETQ ETMRRYFEQFG+ILEAVVITDKNTGRSKGYGFVTF+DPE+A
Sbjct: 25 DTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRFRPQPAVVAS--PAYHGSSSST 135
RAC +PSPVIDGRRANCNLAS G + PP + GR RP V S PA G+
Sbjct: 85 RACADPSPVIDGRRANCNLASHGRPRGPPISY----GRVRPASPYVGSLQPA-RGAYVGG 139
Query: 136 FFYQPTRQYTF----PYSAYGYSGYSQETMYPTSYYGVY-GVQQFPQYYPSSEAGGLIQN 190
+ YQ Y + Y YGY+ Y E +YP Y Y G QQ+ Q Y A N
Sbjct: 140 YGYQQPLSYGYQQGMVYPPYGYTTYGPEYVYPQGMYNPYAGQQQYLQIYGVPGA----MN 195
Query: 191 NYIYPFYGQYAQNIQ-AHGY 209
IYP YGQ Q I HGY
Sbjct: 196 TTIYP-YGQLGQAIPGGHGY 214
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 129/200 (64%), Gaps = 18/200 (9%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTT+TK+FVGGLAWETQ ETMRRYFEQFG+ILEAVVITDKNTGRSKGYGFVTF+DPE+A
Sbjct: 25 DTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRFRPQPAVVAS--PAYHGSSSST 135
RAC +PSPVIDGRRANCNLAS G + PP + GR RP V S PA G+
Sbjct: 85 RACADPSPVIDGRRANCNLASHGRPRGPPISY----GRVRPASPYVGSLQPA-RGAYVGG 139
Query: 136 FFYQPTRQYTFP----YSAYGYSGYSQETMYPTSYYGVY-GVQQFPQYYPSSEAGGLIQN 190
+ YQ Y + Y YGY+ Y E +YP Y Y G QQ+ Q Y A N
Sbjct: 140 YGYQQPLSYGYQQGMVYPPYGYTTYGPEYVYPQGMYNPYAGQQQYLQIYGVPGA----MN 195
Query: 191 NYIYPFYGQYAQNIQ-AHGY 209
IYP YGQ Q I HGY
Sbjct: 196 TTIYP-YGQLGQAIPGGHGY 214
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 124/168 (73%), Gaps = 8/168 (4%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTT+TK+FVGGLAWETQ+ETM++YFEQFGEILEAVVITDK TGRSKGYGFVTF++P++AM
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPT-LHNGAGR-FRPQPAVVASPAYHGS---S 132
RAC + +P+IDGRRANCNLASLG ++ P T H G GR R + GS S
Sbjct: 72 RACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGFGGVGSAFPS 131
Query: 133 SSTFFYQPTRQYTFPYSAYGYSGYSQETMYPTSYYGVYG--VQQFPQY 178
++TF + +Q PY+ YGYS YS + YPTSYYG+YG Q+P Y
Sbjct: 132 AATFPHYAIQQ-GIPYNVYGYSSYSPDYSYPTSYYGMYGGATAQYPVY 178
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 124/168 (73%), Gaps = 8/168 (4%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTT+TK+FVGGLAWETQ+ETM++YFEQFGEILEAVVITDK TGRSKGYGFVTF++P++AM
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPT-LHNGAGR-FRPQPAVVASPAYHGS---S 132
RAC + +P+IDGRRANCNLASLG ++ P T H G GR R + GS S
Sbjct: 72 RACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGFGGVGSAFPS 131
Query: 133 SSTFFYQPTRQYTFPYSAYGYSGYSQETMYPTSYYGVYG--VQQFPQY 178
++TF + +Q PY+ YGYS YS + YPTSYYG+YG Q+P Y
Sbjct: 132 AATFPHYAIQQ-GIPYNVYGYSSYSPDYSYPTSYYGMYGGATAQYPVY 178
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 123/192 (64%), Gaps = 20/192 (10%)
Query: 1 MSQQRQTQMMFG----GGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITD 56
MS RQ ++ + DTT+TK+FVGGLAWET+R+T++RYF+QFG+ILEAVVITD
Sbjct: 1 MSHTRQNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITD 60
Query: 57 KNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRF 116
+ TG+SKGYGFVTFKDP SA+ ACQNP+P+IDGRRANCNLA + P P+L G +F
Sbjct: 61 RTTGKSKGYGFVTFKDPNSAILACQNPNPMIDGRRANCNLAY----QKPDPSL-TGKQKF 115
Query: 117 RPQPAVVASPAYHGSSSSTFFYQPTRQYTFPYSAYGY--SGYSQ-ETMYPTSYYGVYG-- 171
P+ SP SS ++ Q QY FPY Y Y GY + + +Y SY YG
Sbjct: 116 N-SPSRNTSPI-QVQGSSAYYNQHIPQYAFPYPLYRYPHPGYPRPQDIYEMSYNNAYGGG 173
Query: 172 ----VQQFPQYY 179
+ FP YY
Sbjct: 174 PQFPFRWFPAYY 185
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 109/158 (68%), Gaps = 11/158 (6%)
Query: 1 MSQQRQTQMMFGGG----YNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITD 56
MS RQ ++ + DTT+TK+FVGGLAWET+R+T++RYF+QFG+ILEAVVITD
Sbjct: 1 MSHTRQNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITD 60
Query: 57 KNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRF 116
+ TG+SKGYGFVTFKDP SA+ ACQNP+P+IDGRRANCNLA + P P+L G +F
Sbjct: 61 RTTGKSKGYGFVTFKDPNSAILACQNPNPMIDGRRANCNLAY----QKPDPSL-TGKQKF 115
Query: 117 RPQPAVVASPAYHGSSSSTFFYQPTRQYTFPYSAYGYS 154
P+ SP SS ++ Q QY FPY Y Y+
Sbjct: 116 N-SPSRNTSPI-QVQGSSAYYNQHIPQYAFPYPLYRYT 151
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 109/158 (68%), Gaps = 11/158 (6%)
Query: 1 MSQQRQTQMMFGGG----YNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITD 56
MS RQ ++ + DTT+TK+FVGGLAWET+R+T++RYF+QFG+ILEAVVITD
Sbjct: 1 MSHTRQNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITD 60
Query: 57 KNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRF 116
+ TG+SKGYGFVTFKDP SA+ ACQNP+P+IDGRRANCNLA + P P+L G +F
Sbjct: 61 RTTGKSKGYGFVTFKDPNSAILACQNPNPMIDGRRANCNLAY----QKPDPSL-TGKQKF 115
Query: 117 RPQPAVVASPAYHGSSSSTFFYQPTRQYTFPYSAYGYS 154
P+ SP SS ++ Q QY FPY Y Y+
Sbjct: 116 N-SPSRNTSPI-QVQGSSAYYNQHIPQYAFPYPLYRYT 151
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 121/193 (62%), Gaps = 21/193 (10%)
Query: 1 MSQQRQTQMMFG----GGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITD 56
MS RQ ++ + DTT+TK+FVGGLAWET+R+T++RYF+QFG+ILEAVVITD
Sbjct: 1 MSHTRQNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITD 60
Query: 57 KNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRF 116
+ TG+SKGYGFVTFKDP SA+ ACQNP+P+IDGRRANCNLA + P P+L G +F
Sbjct: 61 RTTGKSKGYGFVTFKDPNSAILACQNPNPMIDGRRANCNLAY----QKPDPSL-TGKQKF 115
Query: 117 RPQPAVVASPAYHGSSSSTFFYQPTRQYTFPYSAYGY--SGY--SQETMYPTSYYGVYG- 171
P+ SP SS ++ Q QY FPY Y Y GY Q+ SY YG
Sbjct: 116 N-SPSRNTSPI-QVQGSSAYYNQHIPQYAFPYPLYRYPHPGYPRPQDIYEMQSYNNAYGG 173
Query: 172 -----VQQFPQYY 179
+ FP YY
Sbjct: 174 GPQFPFRWFPAYY 186
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 76/82 (92%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTTFTK+FVGGLAWET + MR YFEQFG+ILEAV+ITDKNTG+SKGYGFVTF+DPESA
Sbjct: 12 DTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESAR 71
Query: 78 RACQNPSPVIDGRRANCNLASL 99
RAC +P+PVIDGRRANCN+ASL
Sbjct: 72 RACADPNPVIDGRRANCNIASL 93
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 77/86 (89%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTT TK+FVGGLAWET ++T+R +FE++G+ILEAV+I+DK TGRSKGYGFVTFKD +SA
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 78 RACQNPSPVIDGRRANCNLASLGANK 103
+AC+ P+ +I+GRRANCN+ASLGA +
Sbjct: 74 KACEEPTVIINGRRANCNIASLGARR 99
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 77/86 (89%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTT TK+FVGGLAWET ++T+R +FE++G+ILEAV+I+DK TGRSKGYGFVTFKD +SA
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 78 RACQNPSPVIDGRRANCNLASLGANK 103
+AC+ P+ +I+GRRANCN+ASLGA +
Sbjct: 74 KACEEPTVIINGRRANCNIASLGARR 99
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ DTT KLFV GL+ ET ET+R F +G++ EA+VI DK TGRSKGYGFV ++ +
Sbjct: 70 DRDTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDG 129
Query: 76 AMRACQNPSPVIDGRRANCNLASLGA 101
A+ A + PS IDGR LA+ G+
Sbjct: 130 AVLALKEPSKKIDGRMTVTQLAAAGS 155
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 7 TQMMFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYG 66
TQ+ G D + K+FVG + +E E++ F ++GEI E + DK +G+++G+
Sbjct: 148 TQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFA 207
Query: 67 FVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAG 114
F +K E A + +DG + C A NK P P N +G
Sbjct: 208 FFVYKTEEGAKNSVAESMKTVDGHQVICKFAV--DNKKPKPVGQNPSG 253
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 53/83 (63%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D + KLF+ GL W+T E +R F +GE+ EA+VI DK TG+SKGYGFVTF + A+
Sbjct: 69 DISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGAL 128
Query: 78 RACQNPSPVIDGRRANCNLASLG 100
A + PS IDGR LA+ G
Sbjct: 129 LALREPSKRIDGRVTVTQLAAAG 151
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D K++V + + + + +F +GEI E + DK TGRSKG+ +K PE A
Sbjct: 161 DVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAN 220
Query: 78 RACQNPSPVIDGRRANCNLA 97
A P ++GR+ NC LA
Sbjct: 221 AAVSEPVKNVEGRQLNCKLA 240
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T + +R+YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 83 PSPVIDGRRANCNLA 97
VIDGR A
Sbjct: 65 KH-VIDGRTVEAKKA 78
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T + +R+YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 83 PSPVIDGRRANCNLA 97
VIDGR A
Sbjct: 65 KH-VIDGRTVEAKKA 78
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T + +R+YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 83 PSPVIDGRRANCNLA 97
VIDGR A
Sbjct: 65 KH-VIDGRTVEAKKA 78
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
++ KLF+GG++W+T E ++ YF +GE++EAV++ D+ TGR++G+GFV F DP A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 78 RACQNPSPVIDGRRANCNLA 97
R + +IDGR A
Sbjct: 62 RVIIDKH-IIDGRTVEAKKA 80
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC 80
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ E+ R
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
++ KLF+GG++W+T E ++ YF +GE++EAV++ D+ TGR++G+GFV F DP A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 78 RACQNPSPVIDGRRANCNLA 97
R + +IDGR A
Sbjct: 62 RVIIDKH-IIDGRTVEAKKA 80
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC 80
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ E+ R
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D + K+FV GL W+T T+ F Q+GEI + +TDK +G+SKGYGF+ FK
Sbjct: 121 DGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSG 180
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS+G
Sbjct: 181 ARNALKEPQKKIGNRMTACQLASIG 205
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+++ + E + + +F +FGEI E + DK TG+ KG+ +K ESA RA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 80 CQNPSPVIDGRRANCNLASLGANKNPPPT 108
+ P +G +C A G P PT
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG----PKPT 312
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D + K+FV GL W+T T+ F Q+GEI + +TDK +G+SKGYGF+ FK
Sbjct: 121 DGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSG 180
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS+G
Sbjct: 181 ARNALKEPQKKIGNRMTACQLASIG 205
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+++ + E + + +F +FGEI E + DK TG+ KG+ +K ESA RA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 80 CQNPSPVIDGRRANCNLASLGANKNPPPT 108
+ P +G +C A G P PT
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG----PKPT 312
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D + K+FV GL W+T T+ F Q+GEI + +TDK +G+SKGYGF+ FK
Sbjct: 121 DGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSG 180
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS+G
Sbjct: 181 ARNALKEPQKKIGNRMTACQLASIG 205
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+++ + E + + +F +FGEI E + DK TG+ KG+ +K ESA RA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 80 CQNPSPVIDGRRANCNLASLGANKNPPPT 108
+ P +G +C A G P PT
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG----PKPT 312
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D + K+FV GL W+T T+ F Q+GEI + +TDK +G+SKGYGF+ FK
Sbjct: 121 DGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSG 180
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS+G
Sbjct: 181 ARNALKEPQKKIGNRMTACQLASIG 205
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+++ + E + + +F +FGEI E + DK TG+ KG+ +K ESA RA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 80 CQNPSPVIDGRRANCNLASLGANKNPPPT 108
+ P +G +C A G P PT
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG----PKPT 312
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T E +R YF +GE+ EAV++ D+ TGR++G+GFV F DP A Q
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 83 PSPVIDGRRANCNLA 97
IDGR A
Sbjct: 67 KHN-IDGRMVEAKKA 80
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D + K+FV GL W+T T+ F Q+GEI + +TDK +G+SKGYGF+ FK
Sbjct: 121 DGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSG 180
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS+G
Sbjct: 181 ARNALKEPQKKIGNRMTACQLASIG 205
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+++ + E + + +F +FGEI E + DK TG+ KG+ +K ESA RA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 80 CQNPSPVIDGRRANCNLASLGANKNPPPT 108
+ P +G +C A G P PT
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG----PKPT 312
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T E +R YF +GE+ EAV++ D+ TGR++G+GFV F DP A Q
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 83 PSPVIDGRRANCNLA 97
IDGR A
Sbjct: 67 KHN-IDGRMVEAKKA 80
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D K+FV GL W+ ET+ F ++GEI + +TDK +G+SKGY F+ FK
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 78 RACQNPSPVIDGRRANCNLASLG 100
RA + P VI R +C LAS G
Sbjct: 221 RALKQPQKVIGNRTTSCQLASAG 243
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+FV ++ + + + +F+QFGE+ + + DK TG+ KG+ +K ESA +A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 80 CQNPSPVIDGRRANCNLASLG 100
+ P+ V +G C A G
Sbjct: 319 LEEPNKVFEGHTLYCQKAVDG 339
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D K+FV GL W+ ET+ F ++GEI + +TDK +G+SKGY F+ FK
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 78 RACQNPSPVIDGRRANCNLASLG 100
RA + P VI R +C LAS G
Sbjct: 221 RALKQPQKVIGNRTTSCQLASAG 243
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+FV ++ + + + +F+QFGE+ + + DK TG+ KG+ +K ESA +A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 80 CQNPSPVIDGRRANCNLASLG 100
+ P+ V +G C A G
Sbjct: 319 LEEPNKVFEGHTLYCQKAVDG 339
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D K+FV GL W+ ET+ F ++GEI + +TDK +G+SKGY F+ FK
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 78 RACQNPSPVIDGRRANCNLASLG 100
RA + P VI R +C LAS G
Sbjct: 221 RALKQPQKVIGNRTTSCQLASAG 243
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 20 TFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
T K+FV ++ + + + +F+QFGE+ + + DK TG+ KG+ +K ESA +A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 80 CQNPSPVIDGRRANCNLASLG 100
+ P+ V +G C A G
Sbjct: 319 LEEPNKVFEGHTLYCQKAVDG 339
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D+ KLF+GG++W+T E ++ +F +G++L V+ +KNTG+ +G+GFV F DP
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 78 RACQNPSPVIDGRRANCNLA 97
R ++ VIDGR + A
Sbjct: 62 RVLEDKH-VIDGRTVDAKRA 80
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL E R+YFE +G + + VV+ D+NTGR +G+GF+TF E+ R
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 83 PSPVIDGRRANCNLASLGANKNP 105
++G++ A L + NP
Sbjct: 173 TFHDLNGKQVEVKRA-LPKDANP 194
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D+ KLF+GG++W+T E ++ +F +G++L V+ +KNTG+ +G+GFV F DP
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 78 RACQNPSPVIDGRRANCNLA 97
R ++ VIDGR + A
Sbjct: 62 RVLEDKH-VIDGRTVDAKRA 80
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL E R+YFE +G + + VV+ D+NTGR +G+GF+TF E+ R
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 83 PSPVIDGRRANCNLASLGANKNP 105
++G++ A L + NP
Sbjct: 173 TFHDLNGKQVEVKRA-LPKDANP 194
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+ FVGGLAW T E + + F Q+GEI+++ +I D+ TGRS+G+GFVTF D +S A +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 83 PS-PVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG+++ T +R F ++G++L+A +I D++TGRS+G+GF+TF E A A Q
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 83 -PSPVIDGRRANCNLAS 98
+ +DGR N A+
Sbjct: 101 MDNKELDGRTVRVNYAT 117
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG+++ T +R F ++G++L+A +I D++TGRS+G+GF+TF E A A Q
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 83 -PSPVIDGRRANCNLAS 98
+ +DGR N A+
Sbjct: 101 MDNKELDGRTVRVNYAT 117
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLF+GG+++ T ++R F ++GE+L+A +I D+ TGRS+G+GF+TF E A A Q
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 82 N-PSPVIDGRRANCNLAS 98
+ GRR N A+
Sbjct: 102 ALDGQDLHGRRVRVNYAN 119
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+ FVGGLAW T E + + F Q+GEI+++ +I D+ TGRS+G+GFVTF + +S A +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 83 PS-PVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 9/82 (10%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLFVGG+++ T +++ F ++G++L+A +I D+ +GRSKG+GFVT+ E A A Q
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 82 NPSPVID-----GRRANCNLAS 98
+D GRR N A+
Sbjct: 104 ----ALDGQDLYGRRVGVNFAN 121
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 9/82 (10%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLFVGG+++ T +++ F ++G++L+A +I D+ +GRSKG+GFVT+ E A A Q
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 82 NPSPVID-----GRRANCNLAS 98
+D GRR N A+
Sbjct: 104 ----ALDGQDLYGRRVGVNFAN 121
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+ FVGGLAW T E + + F Q+GEI+++ +I D+ TGRS+G+GFVTF + +S A +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 83 PS-PVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+ FVGGLAW T + + + F +FGEI ++ VI D+ TGRS+G+GFVTF + +S A +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 83 PS-PVIDGRRANCNLA 97
+ IDGR N A
Sbjct: 69 MNGQDIDGRNITVNEA 84
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+KLF+GGL++ +++R F +G+++EA VITD+ TGRS+G+GFV F ESA A
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 82 NPSPVIDGR 90
++GR
Sbjct: 96 MDGQDLNGR 104
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+KLF+GGL++ +++R F +G+++EA VITD+ TGRS+G+GFV F ESA A
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 82 NPSPVI 87
V+
Sbjct: 96 MDGQVV 101
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLF+ GL++ T +R FEQ G+I+E VI + TG SKGYGFV F +A A +
Sbjct: 33 TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARK 92
Query: 82 NPS-PVIDGRR 91
++DGRR
Sbjct: 93 ELHGQIVDGRR 103
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query: 22 TKLFVGGL--------AWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 73
TKLF+GG+ ++ T ++R F ++GE+L+A +I D+ TGRS+G+GF+TF
Sbjct: 42 TKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSV 101
Query: 74 ESAMRACQN-PSPVIDGRRANCNLAS 98
E A A Q + GRR N A+
Sbjct: 102 EEASSAIQALDGQDLHGRRVRVNYAN 127
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 15 YNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 74
+ D+ KLFVGG++ ET +T++ +F ++G++L + + D+ T +G+GFVTF D
Sbjct: 3 FKMDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDIS 62
Query: 75 SAMRACQNPSPVIDGRRANCNLA 97
SA A Q+ ++ GR+ A
Sbjct: 63 SAHNALQDTHAIL-GRKVEVRKA 84
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL E +RYFE+FG I + VV+ D T R +G+GF+TF +S
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMR 177
Query: 83 PSPVIDGRRANCNLA 97
++GR+ A
Sbjct: 178 SFHDLNGRQVEVKRA 192
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLFV GL++ T +T+R FE FGE++E VI DK + RSKGY F+ + E+A A +
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 83 PSPVIDGRRANCNLASLGANKNPPPTLHNGAGR 115
++G+ N + + K PP + G R
Sbjct: 253 ----MNGKIINGWMIVVDVAKTTPPRYNKGHAR 281
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+F+GGLA +T E +YFE++GEI ++V++ D++TGR +G+GF+T+ D + Q
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 83 PSPVID 88
+ D
Sbjct: 79 NHIIND 84
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 71
G ND K+FVGG+ + ++ +F + G ++E +I D T RS+G+GFV F
Sbjct: 96 GASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVF- 154
Query: 72 DPESAMRACQNPSPVID 88
D + A+ +ID
Sbjct: 155 DSDKAVDNLLADGNMID 171
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KL+VGG+++ T +R F ++G++L+A VI D+ GRSKG+GFVTF E A A Q
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 83 -PSPVIDGRRANCNLA 97
+ + GR N A
Sbjct: 101 MDNQELHGRTVRVNYA 116
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC-Q 81
KLFVGGL++ T +T+ F +G+++EA VITD+ + +SKGYGFVTF + A +A +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 82 NPSPVIDGRRANCNLA------SLG--ANKNPPPTLHNGAGRFRPQPA 121
++GR + A S+G + PP L+ PQ A
Sbjct: 93 MNEKALNGRVVFVDYAKPDTKRSMGMPIARGPPEDLNKQHTTDSPQDA 140
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
KLFVGGL+W ++++ F FG++ E ++ DK++GR++G+GFV F + ++A A
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA 93
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
LF+GG+++ T +R++F +G++L+A +I D+ TGR +G+GFVTF E A A Q
Sbjct: 36 LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 84 SPVID--------GRRANCNLAS 98
S I GR+ N A+
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYAT 114
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+F+GGLA ET ++F ++GEI ++V++ D+ TG+ +G+GF+T+ DP + ++
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 83 PSPVIDGRRANCN 95
S +I+ ++
Sbjct: 106 -SHIINSKQVEIK 117
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FVGG+ + R +F ++GE+ + ++ D +T RS+G+GFVTF D E
Sbjct: 127 SKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTF-DTEE 185
Query: 76 AMRACQNPSPVID--GRRANCNLASLGANKNPPPT 108
A+ + I+ G + A PPP+
Sbjct: 186 AVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPPPS 220
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 97 TFHELNGKMVEVKRA 111
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
T LFV GL+ T ET+R F++FGE++ A V+TD+ +G SKG+GFV + E A + +
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 82 NPSPVIDGR--RANCNLASLGANKNPPPTLHNGAGR 115
+DG+ A + PP N GR
Sbjct: 111 G----MDGKFLEGWVIFAEYARPRPPPGEAVNNTGR 142
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 15 YNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 74
N+ T KLF+ GL+ T E + F FG++LEA VITD+ +GRSKG+ FV++ E
Sbjct: 28 LNSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIE 87
Query: 75 SAMRA 79
A +A
Sbjct: 88 EAEKA 92
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+F++ + A A +
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 84 S-PVIDGRRANCNLASLGANKN 104
+ + R+ CN A+ GAN N
Sbjct: 193 TGKWLGSRQIRCNWATKGANMN 214
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC-Q 81
+LFV L + T E + +F QFG + +A ++ DK+T RSKG ++ F PE A RA +
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 82 NPSPVIDGR 90
+ + + GR
Sbjct: 390 SDNSIFQGR 398
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DT +T L++ L + +R F FG+I+ V D N G SKG+GFV F +PE A
Sbjct: 185 DTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSN-GMSKGFGFVNFDNPEDAK 243
Query: 78 RACQ 81
RA +
Sbjct: 244 RAME 247
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++F+GGL +T + +R E G+I+E +I D+ TG SKGY FV +K E A +A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 82 N 82
+
Sbjct: 164 D 164
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++F+GGL +T + +R E G+I+E +I D+ TG SKGY FV +K E A +A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 82 N 82
+
Sbjct: 164 D 164
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++F+GGL +T + +R E G+I+E +I D+ TG SKGY FV +K E A +A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 82 N 82
+
Sbjct: 164 D 164
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLFV L++ T ++ + F FG + EA +ITD+NT R KG+GFV++K A +A +
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 82 NPS-PVIDGR 90
+ ++DGR
Sbjct: 67 ALNGRIVDGR 76
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
+K+FV GLA+ T E + F Q+G +++A ++ +K R KG+G+VTF + E A +A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FVG L+ E T+ F + +A V+ D TGRSKGYGFV+F+D + A A +
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 84 S-PVIDGRRANCNLASLGA 101
+ + R+ CN A+ GA
Sbjct: 191 TGKWLGNRQIRCNWATKGA 209
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FVG L+ E T+ F + +A V+ D TGRSKGYGFV+F+D + A A +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 84 S-PVIDGRRANCNLASLGA 101
+ + R+ CN A+ GA
Sbjct: 207 TGKWLGNRQIRCNWATKGA 225
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FVG L+ E T+ F + +A V+ D TGRSKGYGFV+F+D + A A +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 84 S-PVIDGRRANCNLASLGA 101
+ + R+ CN A+ GA
Sbjct: 207 TGKWLGNRQIRCNWATKGA 225
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 72
+++V LAWE + + F + G+I+ A V+ D+ TGRS+G+GFVT D
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSD 256
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
+K+FV GLA+ T E + F Q+G +++A ++ +K R KG+G+VTF + E A +A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 72
+++V LAWE + + F + G+I+ A V+ D+ TGRS+G+GFVT D
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSD 256
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESA 76
KL V G+ W+ E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDA 58
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESA 76
KL V G+ W+ E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDA 58
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESA 76
KL V G+ W+ E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDA 58
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC-Q 81
+LFV L + T E + +F QFG + + ++ DK+T RSKG F+ F PE A RA +
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 82 NPSPVIDGR 90
+ + + GR
Sbjct: 960 SDNSIFQGR 968
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESA 76
KL V G+ W+ E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDA 58
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF- 70
GG + D ++ VG LAW + F + G++LEA VI D+ +GRS+G+GFVTF
Sbjct: 189 GGSSDGDN---RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFS 245
Query: 71 --KDPESAMRACQ 81
+ +SA+R
Sbjct: 246 SADEVDSAIRTLD 258
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+LFVG L + + FE G++ VI DK+TGRS+G+GFVT A Q
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 83 PSP-VIDGRRANCNLASLGANKNPPPTLHNGAGRFRPQP 120
+ V+DGR L N PPP + RF P
Sbjct: 145 LNGYVVDGRE-------LRVNAGPPPPPRSENSRFGENP 176
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF- 70
GG + D ++ VG LAW + F + G++LEA VI D+ +GRS+G+GFVTF
Sbjct: 189 GGSSDGDN---RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFS 245
Query: 71 --KDPESAMRACQ 81
+ +SA+R
Sbjct: 246 SADEVDSAIRTLD 258
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+LFVG L + + FE G++ VI DK+TGRS+G+GFVT A Q
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 83 PSP-VIDGRRANCNLASLGANKNPPPTLHNGAGRFRPQP 120
+ V+DGR L N PPP + RF P
Sbjct: 145 LNGYVVDGRE-------LRVNAGPPPPPRSENSRFGENP 176
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPESAMRA 79
KLFVG LAW E++ + F++ G ++ A V+ D TG+S+GYGFV++ + ++A+
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 80 CQNPSPVIDGRRANCNLA 97
N ++GR +LA
Sbjct: 265 MDNVE--LEGRTLRVSLA 280
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVG L ++ E + + FEQ G + A VI +++T RS+G+GFVT E RA
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 83 PSPV-IDGRRANCNLAS 98
S +DGR N A+
Sbjct: 183 FSGFELDGRLLTVNKAA 199
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K++ G L W + +R F++ +L A +I +++ GRS+G+GFVTF+ E A
Sbjct: 213 KIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA 272
Query: 83 PSPV-IDGRRANCNLASLGANKNPPPTLHN 111
+ V + GR NLA+ + +PP N
Sbjct: 273 MNGVEVQGRPLRLNLAAARTSPSPPVIEEN 302
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 10 MFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 69
+ G + T L++G L + + + + F+QFGEI+ A VI D+ TG SKGYGFV
Sbjct: 439 LGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVK 498
Query: 70 FKD 72
+ D
Sbjct: 499 YAD 501
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FVG + ++ E ++ + G ++ ++TD+ TG+ KGYGF + D E+A+ A +N
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 84 SP-VIDGRRANCNLA 97
I+GR+ + A
Sbjct: 91 QGYEINGRQLRVDFA 105
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 21 FTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC 80
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 177 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 236
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 21 FTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC 80
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 297 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 356
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 21 FTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC 80
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 282 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 341
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 21 FTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC 80
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 134 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 193
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 11 FGGGYNNDTT-FTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 69
+ G DT+ +FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+
Sbjct: 135 YASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVS 194
Query: 70 FKDPESAMRACQNPS-PVIDGRRANCNLASLGA 101
F+ + A A + + + R+ CN A+ GA
Sbjct: 195 FRSQQDAQSAINDLTGKWLGSRQIRCNWATKGA 227
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA-CQ 81
++FVGGL +T E +++ F++ GE+LE + + +T +++GY V F + E A +A +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 82 NPSPVIDGRR 91
+PVI G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA-CQ 81
++FVGGL +T E +++ F++ GE+LE + + +T +++GY V F + E A +A +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 82 NPSPVIDGRR 91
+PVI G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FV GL T ET+R F++FGE+ + V+ D+ +G SKG+G+V + E A + Q
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQG- 104
Query: 84 SPVIDGR 90
+DG+
Sbjct: 105 ---MDGK 108
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K++ G L W+ + +R+ F + +L A V+ ++N G+S+GYGFV+F+ E A
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 83 PSPV-IDGRRANCNLASLGANKNPPPTLHNGAG 114
+ V + GR LA + P +L G
Sbjct: 268 MNGVEVQGRPLRLKLA---VDNRKPSSLDQNKG 297
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K++ G L W+ + +R+ F + +L A V+ ++N G+S+GYGFV+F+ E A
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 83 PSPV-IDGRRANCNLASLGANKNPPPTLHNGAG 114
+ V + GR LA + P +L G
Sbjct: 268 MNGVEVQGRPLRLKLA---VDNRKPSSLDQNKG 297
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA-CQ 81
++FVGGL +T E +++ F++ GE+LE + + +T +++GY V F + E A +A +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 82 NPSPVIDGRR 91
+PVI G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 38/60 (63%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
T+L+V GL++ T E++R F+ FG++++ ++ DK R +G+ F+ + E + +A +
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 19 TTFTKLFVGGLAWETQRETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
T+ +FVG LA + ++ F +F I A V+ D NTGRSKGYGFV F D
Sbjct: 211 TSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERT 270
Query: 78 RA 79
RA
Sbjct: 271 RA 272
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
T+L+V GL++ T E++R F+ FG++++ ++ DK R +G+ F+ + E + +A +
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 82 NPS-PVIDGR 90
+DGR
Sbjct: 155 GMHGKFLDGR 164
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 24 LFVGGLAWETQRETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
+FVG LA + ++ F +G + A V+TD NTGRSKGYGFV F D RA
Sbjct: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TK+F+ GL T + + F FGE+ + ++ DK TG+S G+ ++ F + +SA A +
Sbjct: 71 TKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAK 130
Query: 82 NPS-PVIDGRRANCNLASLGANKN 104
+ + GR +A G++K+
Sbjct: 131 EMNGKLFYGRFIYVTIAKPGSSKS 154