Miyakogusa Predicted Gene

Lj3g3v2401880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2401880.1 Non Characterized Hit- tr|D8RJG5|D8RJG5_SELML
Putative uncharacterized protein OS=Selaginella moelle,32.69,1e-17,no
description,Armadillo-like helical; RIX1,NULL,CUFF.43989.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g028030.1 | rRNA processing/ribosome biogenesis protein | ...   233   5e-62
Medtr3g075460.1 | rRNA processing/ribosome biogenesis protein | ...   232   1e-61

>Medtr8g028030.1 | rRNA processing/ribosome biogenesis protein | HC
           | chr8:10367089-10377430 | 20130731
          Length = 864

 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 136/188 (72%), Gaps = 3/188 (1%)

Query: 1   MAAFDHFGGMDDVELKPRLLRTLISDHLRDKKRPSFNPSALSKVISLIRTHSLLSESFTE 60
           MA FD F  M D+ LKPRLL TLI D+L     P  NPS LS V+SLI+THSLLSE  TE
Sbjct: 1   MATFDSFRDMYDIALKPRLLNTLIRDNLPTVDHPFSNPSQLSNVVSLIKTHSLLSEDVTE 60

Query: 61  SMAPELVEEWKSAVTSWVERIETLLESSTLDKCWAGISLLGVTCELCSDDRFVDSYSSWF 120
           SM P+ ++ WKS+V SWV+R+  L+ S   DK WAGISLLGVTCE CS DRF +SY+ WF
Sbjct: 61  SMDPKQIKAWKSSVASWVDRVLLLISSREPDKRWAGISLLGVTCEECSSDRFQESYTVWF 120

Query: 121 DKLKKKLQPPADSDLVRVACCASISDLFARLSGFPKLKKD---CVVKVVQPVLRMLQDDN 177
            KL   LQ P DS  VRVA CASISDL ARLSGFPK KKD     VKVVQPVL+ML DDN
Sbjct: 121 QKLLTSLQSPEDSHFVRVATCASISDLLARLSGFPKFKKDGSASAVKVVQPVLKMLHDDN 180

Query: 178 SEAILEAA 185
           SEA+ EAA
Sbjct: 181 SEAVWEAA 188


>Medtr3g075460.1 | rRNA processing/ribosome biogenesis protein | HC
           | chr3:34364829-34352574 | 20130731
          Length = 862

 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 140/188 (74%), Gaps = 3/188 (1%)

Query: 1   MAAFDHFGGMDDVELKPRLLRTLISDHLRDKKRPSFNPSALSKVISLIRTHSLLSESFTE 60
           MAAF+HF  M DV LKPRLL T+I +HL     P  NPS LSKV+SLI+THSLLS+S TE
Sbjct: 1   MAAFEHFKDMYDVALKPRLLNTIIREHLPSADHPFSNPSELSKVVSLIKTHSLLSDSVTE 60

Query: 61  SMAPELVEEWKSAVTSWVERIETLLESSTLDKCWAGISLLGVTCELCSDDRFVDSYSSWF 120
           S+ P+L++  KS+ TSWV+R+  L+ S   DK WAGISLLGVTCE CS DRF +SY+ WF
Sbjct: 61  SLDPKLIKSLKSSFTSWVDRLLLLISSHEPDKRWAGISLLGVTCEECSSDRFEESYTVWF 120

Query: 121 DKLKKKLQPPADSDLVRVACCASISDLFARLSGFPKLKKD---CVVKVVQPVLRMLQDDN 177
            KL   LQ PA+S LVRVA CASISDL  RLSGFPK KKD     VKVVQPVL+ML DDN
Sbjct: 121 QKLLTCLQSPAESHLVRVAACASISDLLTRLSGFPKFKKDGSASAVKVVQPVLKMLHDDN 180

Query: 178 SEAILEAA 185
           S+A+ EA 
Sbjct: 181 SDAVWEAG 188