Miyakogusa Predicted Gene

Lj3g3v2400840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2400840.1 tr|A9T9H6|A9T9H6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_168781,26.19,1e-17,seg,NULL,CUFF.43985.1
         (422 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g028030.1 | rRNA processing/ribosome biogenesis protein | ...   346   3e-95
Medtr3g075460.1 | rRNA processing/ribosome biogenesis protein | ...   326   3e-89

>Medtr8g028030.1 | rRNA processing/ribosome biogenesis protein | HC
           | chr8:10367089-10377430 | 20130731
          Length = 864

 Score =  346 bits (887), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 214/438 (48%), Positives = 271/438 (61%), Gaps = 28/438 (6%)

Query: 1   MGVGIAMYLEQEVVNNAIADLSTIKNKNSVTLNGSNSDVSVRVPPPTNHRKRKHSSNAGS 60
           MGVG+A+ L +EVVNNAIADLST++ KN   LNGSN++VS   P P ++RKRKHSS  GS
Sbjct: 439 MGVGMALCLSKEVVNNAIADLSTVEKKNGGMLNGSNTEVSTIAPLPASNRKRKHSSTNGS 498

Query: 61  LQEHVESVGLGVKDPKNRPLTPISLRIXXXXXXXXXXXXXXXXRSERWRQKVDSLLMDIA 120
           +QE+    GLGV+ P   P+TPISLR+                +SE+WR KVDSLL+ IA
Sbjct: 499 VQEYDAGGGLGVEVPNKCPVTPISLRVAALEALEALITVAGALKSEQWRSKVDSLLIVIA 558

Query: 121 NDSFKEGPSSEEISVLQQKDPXXXXXXXXXXXXXXXXXXXXXXXXVRPPYISQGLGLFRR 180
            DSFKEG S EEI+V Q+KD                          RPPY+SQGL LF+R
Sbjct: 559 MDSFKEGSSREEINVFQKKDHAATATDLQFAALRALLASFLSVS--RPPYLSQGLELFQR 616

Query: 181 GRQQTGTKLAEFCAHALLTLEVLIHPRALPLLNYDCAINN---EAQRNFQDEYTSWNSGG 237
           G+QQTGTKLAEFCAHA+LTLEVLIHPRALPL++Y    N+   EAQ +F  EY S N   
Sbjct: 617 GKQQTGTKLAEFCAHAMLTLEVLIHPRALPLVDYVPPNNDNFGEAQFSFGHEYASRNH-T 675

Query: 238 AFGLPQTAPPDYEDNLYASWLGNGNNEADMSLAKEAEHTKRPSEACRDNDPKVLSANLSS 297
            FGLPQT PP+  +NL+A +L NG++E      +  + TK  SE         ++ +L S
Sbjct: 676 TFGLPQTEPPESVNNLFADYLANGDDEMGGLWTENTKKTKVSSE---------MATSLPS 726

Query: 298 DTIIQERSEMAPETATGKDVEMRTEEGAFSFMSGQPGDSTVLFKEPVSCTTSIP-DIDAH 356
              IQERSEM PE AT  DVEMRT E   +  S  PG+S V F+EPV CTTSIP  ID H
Sbjct: 727 SANIQERSEMVPEIATRADVEMRTVENETTMKSDHPGESVVQFQEPVHCTTSIPAAIDIH 786

Query: 357 FGAVATEISERVVSDSAMPDRNSSLI----------GTSDSKRTREFAFKLDYGSS--EA 404
             A   +  ER+VS+SA+    ++ +           +SD+   ++  FKLDYG+S  + 
Sbjct: 787 SDAATDKEPERIVSESAIAHNEANHVESASQSKSSAQSSDTNMLQQVEFKLDYGNSVDDD 846

Query: 405 EDDPFPAIVDADPDTDSE 422
           +DDPFP IVD DP++DSE
Sbjct: 847 DDDPFPDIVDGDPNSDSE 864


>Medtr3g075460.1 | rRNA processing/ribosome biogenesis protein | HC
           | chr3:34364829-34352574 | 20130731
          Length = 862

 Score =  326 bits (835), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/416 (46%), Positives = 243/416 (58%), Gaps = 25/416 (6%)

Query: 1   MGVGIAMYLEQEVVNNAIADLSTIKNKNSVTLNGSNSDVSVRVPPPTNHRKRKHSSNAGS 60
           MGVG+A+ L +EVVNNAIADLSTI+ KN    NGSN+D S   P P + +KRKHSS  GS
Sbjct: 439 MGVGMALCLSKEVVNNAIADLSTIEKKNGGMSNGSNTDASTVAPLPASSKKRKHSSTTGS 498

Query: 61  LQEHVESVGLGVKDPKNRPLTPISLRIXXXXXXXXXXXXXXXXRSERWRQKVDSLLMDIA 120
           LQE+    GLGV+ PK   + PISLR+                +SE+WR KVDSLL+ IA
Sbjct: 499 LQEYDAGGGLGVEVPKKCTVAPISLRVAALETLEALITVAGALKSEQWRSKVDSLLIVIA 558

Query: 121 NDSFKEGPSSEEISVLQQKDPXXXXXXXXXXXXXXXXXXXXXXXXVRPPYISQGLGLFRR 180
            DS +EG SSEEI+V Q+K+                          RPPY+SQGL LFRR
Sbjct: 559 MDSLREGSSSEEINVFQKKE--LTATAADLQLAALRALLASFLSVPRPPYLSQGLELFRR 616

Query: 181 GRQQTGTKLAEFCAHALLTLEVLIHPRALPLLNYDCAINN---EAQRNFQDEYTSWNSGG 237
           G+QQTGTKLAEFCAHA+LTLEVLIHPRALPL++Y    NN   E   NF+DE  S N   
Sbjct: 617 GKQQTGTKLAEFCAHAMLTLEVLIHPRALPLVDYVPPNNNTYDEVHFNFRDECVSRNHTT 676

Query: 238 AFGLPQTAPPDYEDNLYASWLGNGNNEADMSLAKEAEHTKRPSEACRDNDPKVLSANLSS 297
            FGL QT PPD  +N++A +L NG+++      +  +  K+ SE         ++  L S
Sbjct: 677 PFGLHQTEPPDGVNNMFADYLANGDDDMGGLWKENMKDAKKSSE---------MATPLPS 727

Query: 298 DTIIQERSEMAPETATGKDVEMRTEEGAFSFMSGQPGDSTVLFKEPVSCTTSIPD-IDAH 356
              IQERSEM  ET T  DVEMRT E      S  PG+S   F+EP +CTTS P  ID  
Sbjct: 728 SADIQERSEMVTETTTCADVEMRTVENETVSKSDNPGESVTHFQEPATCTTSNPAVIDIR 787

Query: 357 FGAVATEISERVVSDSAMPDRNSSLI----------GTSDSKRTREFAFKLDYGSS 402
             A     +ER+VSDSA+    +  +           +SD+   ++FAFKLDYG+S
Sbjct: 788 GDAATITEAERIVSDSAIAHNEAKHVELASQSRSSAQSSDTNMLQQFAFKLDYGNS 843