Miyakogusa Predicted Gene

Lj3g3v2387580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2387580.1 Non Characterized Hit- tr|J3L5J0|J3L5J0_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB01G4,52.13,4e-19,
,CUFF.43951.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088030.1 | hypothetical protein | HC | chr3:39908391-3990...   114   2e-26
Medtr1g030060.1 | hypothetical protein | HC | chr1:10474963-1047...   102   1e-22
Medtr8g094790.1 | hypothetical protein | HC | chr8:39595746-3959...    82   2e-16

>Medtr3g088030.1 | hypothetical protein | HC |
           chr3:39908391-39906229 | 20130731
          Length = 176

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 84/131 (64%), Gaps = 15/131 (11%)

Query: 3   QADVSYCCGSCGYPLNLTSSNRITSNIASEYKRSVKKGSISFASVDLSRFTQVDEISCFP 62
           Q DV Y CGSCGY LNL+SSNR TS+I S+Y +S+K+G ISF ++D SRFTQVDEI C P
Sbjct: 33  QRDVRYSCGSCGYDLNLSSSNRNTSSIDSKYGKSIKRGIISFFNIDDSRFTQVDEIECAP 92

Query: 63  VSWFN-----SSKTKLLCRKCGVHIGYGYCRE---SPALC-----GLEPSVSSS--SQGK 107
               N       KTKLLCRKC  HIGY Y      SP+       G EPS S+   +  K
Sbjct: 93  HFSKNLWGLFRRKTKLLCRKCCNHIGYAYNGNNSSSPSFILVSSNGAEPSPSTEAPTHVK 152

Query: 108 FIIKIRSLQPS 118
           + I+IR+LQPS
Sbjct: 153 YNIRIRALQPS 163


>Medtr1g030060.1 | hypothetical protein | HC |
           chr1:10474963-10476367 | 20130731
          Length = 138

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 78/120 (65%), Gaps = 11/120 (9%)

Query: 10  CGSCGYPLNLTSSNRITSNIASEYKRSVKKGSISFASVDLSRFTQVDEISCFP----VSW 65
           CG+CGY LNL+SSNR T++I S+Y +S+K+G ISF ++D SRFTQVDEI C P     SW
Sbjct: 8   CGACGYELNLSSSNRNTTSIGSKYGKSIKRGIISFFNIDDSRFTQVDEIQCAPHFHKHSW 67

Query: 66  -FNSSKTKLLCRKCGVHIG---YGYCRESPALCGLEPSVSSSSQG---KFIIKIRSLQPS 118
                +TKLLCRKCG HIG    G+    P +   E S  SS      K+ I+IRSLQPS
Sbjct: 68  GLFRRRTKLLCRKCGNHIGNAYNGFTSSFPLVTDGEESSPSSKVSSGVKYDIRIRSLQPS 127


>Medtr8g094790.1 | hypothetical protein | HC |
           chr8:39595746-39596546 | 20130731
          Length = 150

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 70/126 (55%), Gaps = 13/126 (10%)

Query: 5   DVSYCCGSCGYPLNLTSSNRIT--SNIASEYKRSVKKGS---ISFASVDLSRFTQVDEIS 59
           DV+Y CGSCGY LNL SSNR T  S   S Y +S+KK     ISF SVD +RFTQ+ + S
Sbjct: 25  DVNYSCGSCGYELNLNSSNRNTTLSLTDSNYGKSIKKRKRCLISFFSVDETRFTQIQQFS 84

Query: 60  CFPVSW----FN---SSKTKLLCRKCGVHIGYGYCRESPALCGLEPSVSSSSQGKFIIKI 112
            F  SW    FN   ++ TKLLCR C  H+GY     S +          S    F IK+
Sbjct: 85  -FSFSWRISFFNFQRTTTTKLLCRNCRNHLGYARTFPSQSHSHSHSWDGISDSRIFYIKL 143

Query: 113 RSLQPS 118
            ++QPS
Sbjct: 144 NAIQPS 149