Miyakogusa Predicted Gene

Lj3g3v2320530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2320530.1 Non Characterized Hit- tr|I1KUZ9|I1KUZ9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3148
PE=,89.82,0,seg,NULL; Med6,Mediator complex, subunit Med6;
MED-6-RELATED,Mediator complex, subunit Med6,CUFF.43930.1
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g015230.1 | mediator of RNA polymerase II transcription su...   387   e-108
Medtr8g015230.2 | mediator of RNA polymerase II transcription su...   246   2e-65
Medtr0361s0030.1 | mediator of RNA polymerase II transcription s...   179   3e-45

>Medtr8g015230.1 | mediator of RNA polymerase II transcription
           subunit 6 | HC | chr8:4949326-4944273 | 20130731
          Length = 248

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/246 (80%), Positives = 205/246 (83%), Gaps = 5/246 (2%)

Query: 1   MATPA-AMLEGVAP-PQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNN 58
           MATP   ML+G  P  QPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWT NN
Sbjct: 1   MATPGMGMLDGGVPTAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTSNN 60

Query: 59  EQLRMRSLHPLDLSQLTKMTGTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGS 118
           EQLRMRS HPLD SQLTKM G E+VLSEVMEPHLF+++KQKRDSPDKVTPMLAYYILDGS
Sbjct: 61  EQLRMRSHHPLDSSQLTKMIGIEYVLSEVMEPHLFIMKKQKRDSPDKVTPMLAYYILDGS 120

Query: 119 IYQAPQLCNVFAARIGRALYYIEKAFTTAASKLEKIGYAGPVDSETETASLESKVAKETI 178
           IYQAPQL NVFAARIGRALYYIEKAFTTAASKLEKIGY   VDSE ET   E KVAKETI
Sbjct: 121 IYQAPQLSNVFAARIGRALYYIEKAFTTAASKLEKIGY---VDSENETTIPEPKVAKETI 177

Query: 179 DLKEVKRVDHILASLQRKLXXXXXXXXXXXXXXXXSTAETEKGTETQESAEPQAPQVDPI 238
           DLKE+KRVDHILASLQRKL                STAETEKG ETQE+AE  AP VDPI
Sbjct: 178 DLKEIKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGPETQEAAESLAPTVDPI 237

Query: 239 IDQGPA 244
           +DQGPA
Sbjct: 238 LDQGPA 243


>Medtr8g015230.2 | mediator of RNA polymerase II transcription
           subunit 6 | HC | chr8:4949319-4944273 | 20130731
          Length = 183

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 122/135 (90%), Gaps = 2/135 (1%)

Query: 1   MATPA-AMLEGVAP-PQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNN 58
           MATP   ML+G  P  QPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWT NN
Sbjct: 1   MATPGMGMLDGGVPTAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTSNN 60

Query: 59  EQLRMRSLHPLDLSQLTKMTGTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGS 118
           EQLRMRS HPLD SQLTKM G E+VLSEVMEPHLF+++KQKRDSPDKVTPMLAYYILDGS
Sbjct: 61  EQLRMRSHHPLDSSQLTKMIGIEYVLSEVMEPHLFIMKKQKRDSPDKVTPMLAYYILDGS 120

Query: 119 IYQAPQLCNVFAARI 133
           IYQAPQL NVFAARI
Sbjct: 121 IYQAPQLSNVFAARI 135


>Medtr0361s0030.1 | mediator of RNA polymerase II transcription
           subunit 6 | HC | scaffold0361:14859-11839 | 20130731
          Length = 105

 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/106 (84%), Positives = 94/106 (88%), Gaps = 3/106 (2%)

Query: 76  KMTGTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVFAARIGR 135
           KM G E+VLSEVMEPHLF+++KQKRDSPDKVTPMLAYYILDGSIYQAPQL NVFAARIGR
Sbjct: 1   KMIGIEYVLSEVMEPHLFIMKKQKRDSPDKVTPMLAYYILDGSIYQAPQLSNVFAARIGR 60

Query: 136 ALYYIEKAFTTAASKLEKIGYAGPVDSETETASLESKVAKETIDLK 181
           ALYYIEKAFTTAASKLEKIGY   VDSE ET   E K AKETIDLK
Sbjct: 61  ALYYIEKAFTTAASKLEKIGY---VDSENETTIPEPKAAKETIDLK 103