Miyakogusa Predicted Gene

Lj3g3v2318160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2318160.1 Non Characterized Hit- tr|C0PLH8|C0PLH8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,29.4,4e-18,seg,NULL,CUFF.43857.1
         (468 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g014490.1 | hypothetical protein | HC | chr8:4555280-45523...   422   e-118

>Medtr8g014490.1 | hypothetical protein | HC | chr8:4555280-4552343
           | 20130731
          Length = 454

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/470 (55%), Positives = 320/470 (68%), Gaps = 24/470 (5%)

Query: 1   MKKKGLANVSNTMMNSQKHPHLEDDDDTFDRLHSDLSSLFLQIDEIVVKAFGLKK-VSQK 59
           MK K    ++N   N Q   +  DD+ +   LHSDLS+L  QIDE+VVKA  +KK VS++
Sbjct: 1   MKMKNNNTITNRF-NPQNQINDNDDNSSLTLLHSDLSTLLHQIDELVVKALEVKKSVSKE 59

Query: 60  GSKKIEPFSHVLSDLLSCLKPWVPRLQIALSSLSVESESKNEQVSFCEESNVSECGSPQE 119
           G   +E FS++LS++LS LKPW P+LQ +LSS SVESE K+E+VS C+ESNVS+C SP+E
Sbjct: 60  GKSDVESFSNLLSEMLSRLKPWGPKLQSSLSSTSVESEIKSEEVS-CDESNVSDCESPKE 118

Query: 120 TTLDXXXXXXXXXXWRGDCTVDRGRQMFMLTPLPLSRALLSTKPKQPQTKSESDELASST 179
           TTL           WR +CTV RGRQMFMLTPLPLS++LLS+K  QPQTK +  ELASS 
Sbjct: 119 TTL---VSPSPLVSWRANCTVQRGRQMFMLTPLPLSKSLLSSKSHQPQTKLDFTELASS- 174

Query: 180 YGIGTSTFLDLSRDMNTLLDSVLMKQAPTEPAPSSVAIEEANNEEPGLISSPFVPKRDTS 239
                        + +++L  V+ K  P +PA S V+ E  NNEEP LISSP + K DTS
Sbjct: 175 -------------NNDSVLYGVVTKPTPIKPALSLVSEEATNNEEPELISSPDLSKIDTS 221

Query: 240 MLVMMTPCLKMSPPRSCVLLEPISEIHHRGNDKVRKCTPFPVGVHYXXXXXXXXXXXXXX 299
           ML MMTPCLKMSPP+SCVLLEPISEI   GNDK RK TPFPVGVHY              
Sbjct: 222 MLYMMTPCLKMSPPKSCVLLEPISEICRVGNDKFRKSTPFPVGVHYSDSEDSESSGSDGV 281

Query: 300 XXX-XXKYPELLGLQKVSKSGLGKKNVEASPAWLTSPPKTCVLLEPSDETSLELEKADNE 358
                 KYP+L+G   V KSG+GK+NVEASP WLTSPPKTCVLL   DE SL+ EK DN+
Sbjct: 282 TQGLALKYPDLMGKHCVPKSGIGKENVEASPIWLTSPPKTCVLLGTPDEKSLDKEKVDNK 341

Query: 359 PCIQITDSVLKQPVSK--LKDDISKDRNQAKISCDQDHSIVNSL-HIESTPMWPEPESSF 415
            C+ +T S+LKQ V+K  L++DISK  NQAK +C      V  L HIESTPMW  PE++ 
Sbjct: 342 SCMHVTKSILKQQVNKLNLEEDISKGHNQAKKTCCNKGDFVGDLSHIESTPMWLNPENTV 401

Query: 416 RTGKRPGENTLKKELWTKFEAATAGGFQSKLSTVQENTRKGFLDLLEEAS 465
           + GKR GENTLKKELW KFE A+   F+SK  TV ++++KGFLDLLEEAS
Sbjct: 402 QRGKRAGENTLKKELWAKFEEASDCPFESKFQTVSKSSQKGFLDLLEEAS 451