Miyakogusa Predicted Gene

Lj3g3v2317800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2317800.1 tr|Q108V0|Q108V0_ORYSJ Expressed protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=LOC_Os10g4307,50.74,0.000000000000003,coiled-coil,NULL;
seg,NULL,CUFF.43831.1
         (328 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g009780.1 | hypothetical protein | HC | chr8:2416091-23880...   373   e-103

>Medtr8g009780.1 | hypothetical protein | HC | chr8:2416091-2388008 |
            20130731
          Length = 2158

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/293 (64%), Positives = 215/293 (73%)

Query: 2    RESILQVLGDLTAVHSYFDVFSEKINQXXXXXXXXXXXLDIIQKEHALPGRMEDSKGWNQ 61
            RES+LQVLG+LTAVHSYFDVFS KINQ           LDI+QKE A+PGR EDSK WNQ
Sbjct: 1827 RESVLQVLGNLTAVHSYFDVFSTKINQDDMDLEEAELELDIVQKERAIPGRKEDSKNWNQ 1886

Query: 62   TPTLPSYGKDLSRLQQIRECIRSLEKTKLKEDILGRRQKKILLRHTHQKHXXXXXXXXXX 121
             P+LPS GKD+SRLQQIRECIR+LEK+KLKEDIL RRQKK+L+RH  QK+          
Sbjct: 1887 IPSLPSSGKDVSRLQQIRECIRTLEKSKLKEDILARRQKKLLMRHDRQKYLEEAALREAE 1946

Query: 122  XXXXXDRERVAXXXXXXXXXXXXXXXXAKTRELRHNLDMEKERQTQKELQREIEQAESGL 181
                 DRE+ A                AKTRELRHNLDMEKERQTQ++LQREIEQAESG+
Sbjct: 1947 ILQELDREKAAEMEKEMERQKLLEIERAKTRELRHNLDMEKERQTQRDLQREIEQAESGI 2006

Query: 182  RPSRRDFPSSTHTNRPRDRFRDRENGRSVNDGSARAGTGSLQXXXXXXXXXXXXXXXXVL 241
            RPSRRDF SSTH +RPRDRFR+R+NGRS ++GS R G GSLQ                VL
Sbjct: 2007 RPSRRDFSSSTHNSRPRDRFRERDNGRSGHEGSNRVGPGSLQPEIPSTNSSMVSSPTIVL 2066

Query: 242  SGSRTFSGQVPTILQSRDRQDDSGSMYEENVDGSKDSGDASSIGDPELASAFD 294
            SGSRTFSGQ+PTILQSRDRQDD+GS+ EENVDGS+DSGD  SIGDPEL SAF+
Sbjct: 2067 SGSRTFSGQMPTILQSRDRQDDTGSINEENVDGSRDSGDTGSIGDPELVSAFE 2119