Miyakogusa Predicted Gene

Lj3g3v2315230.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2315230.4 Non Characterized Hit- tr|F6HYC6|F6HYC6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,56.67,0.00000000000004,seg,NULL,CUFF.43779.4
         (300 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g105340.5 | LETM1-like protein | HC | chr7:42698358-427070...    53   3e-07
Medtr7g105340.4 | LETM1-like protein | HC | chr7:42698358-427090...    53   4e-07
Medtr7g105340.2 | LETM1-like protein | HC | chr7:42698358-427090...    53   4e-07
Medtr7g105340.3 | LETM1-like protein | HC | chr7:42698358-427090...    52   5e-07
Medtr7g105340.1 | LETM1-like protein | HC | chr7:42698358-427090...    52   6e-07
Medtr1g058390.1 | LETM1-like protein | HC | chr1:25720767-257077...    49   6e-06

>Medtr7g105340.5 | LETM1-like protein | HC | chr7:42698358-42707085
           | 20130731
          Length = 695

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 58  RYYTSLRKCSSL-------GASTN--LHFSCTDQNEEEEITNVTSSSQGMEFNRVDCVVW 108
           ++Y   RK  +L       G S N     S T  N + E   V  +   +E +  D ++ 
Sbjct: 74  KFYRPKRKVKNLLFVSSDEGVSVNEDSDGSSTSNNTDLEKMRVKLNRPLVEDDFCDRLLQ 133

Query: 109 VLHESARSFS-QAAESIGLARSGRGLAMAWIGKDVRVWHRRIAYQVAVYALLKTAIELEI 167
            L+++AR F  +  E   L+R     ++AW G D   W + ++YQ AVY+LL+ A E   
Sbjct: 134 CLYDAARVFELEIKEQNSLSRQS-WFSIAWFGVDRIAWEKTLSYQAAVYSLLQAASEFSS 192

Query: 168 LLSQERQNESSPVRNILTPLINQMGERIESQLKMKHPYLVQWFRDTKMPRMTGYFI 223
               + +N +  V+  L  L   +   I  +L  K P   +WF   ++P +   FI
Sbjct: 193 QSDGKDKNVNVFVQRSLLRLSAPLESIIREKLSAKQPKAYEWFWSKQVPAVVASFI 248


>Medtr7g105340.4 | LETM1-like protein | HC | chr7:42698358-42709000
           | 20130731
          Length = 768

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 58  RYYTSLRKCSSL-------GASTN--LHFSCTDQNEEEEITNVTSSSQGMEFNRVDCVVW 108
           ++Y   RK  +L       G S N     S T  N + E   V  +   +E +  D ++ 
Sbjct: 74  KFYRPKRKVKNLLFVSSDEGVSVNEDSDGSSTSNNTDLEKMRVKLNRPLVEDDFCDRLLQ 133

Query: 109 VLHESARSFS-QAAESIGLARSGRGLAMAWIGKDVRVWHRRIAYQVAVYALLKTAIELEI 167
            L+++AR F  +  E   L+R     ++AW G D   W + ++YQ AVY+LL+ A E   
Sbjct: 134 CLYDAARVFELEIKEQNSLSRQS-WFSIAWFGVDRIAWEKTLSYQAAVYSLLQAASEFSS 192

Query: 168 LLSQERQNESSPVRNILTPLINQMGERIESQLKMKHPYLVQWFRDTKMPRMTGYFI 223
               + +N +  V+  L  L   +   I  +L  K P   +WF   ++P +   FI
Sbjct: 193 QSDGKDKNVNVFVQRSLLRLSAPLESIIREKLSAKQPKAYEWFWSKQVPAVVASFI 248


>Medtr7g105340.2 | LETM1-like protein | HC | chr7:42698358-42709000
           | 20130731
          Length = 768

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 58  RYYTSLRKCSSL-------GASTN--LHFSCTDQNEEEEITNVTSSSQGMEFNRVDCVVW 108
           ++Y   RK  +L       G S N     S T  N + E   V  +   +E +  D ++ 
Sbjct: 74  KFYRPKRKVKNLLFVSSDEGVSVNEDSDGSSTSNNTDLEKMRVKLNRPLVEDDFCDRLLQ 133

Query: 109 VLHESARSFS-QAAESIGLARSGRGLAMAWIGKDVRVWHRRIAYQVAVYALLKTAIELEI 167
            L+++AR F  +  E   L+R     ++AW G D   W + ++YQ AVY+LL+ A E   
Sbjct: 134 CLYDAARVFELEIKEQNSLSRQS-WFSIAWFGVDRIAWEKTLSYQAAVYSLLQAASEFSS 192

Query: 168 LLSQERQNESSPVRNILTPLINQMGERIESQLKMKHPYLVQWFRDTKMPRMTGYFI 223
               + +N +  V+  L  L   +   I  +L  K P   +WF   ++P +   FI
Sbjct: 193 QSDGKDKNVNVFVQRSLLRLSAPLESIIREKLSAKQPKAYEWFWSKQVPAVVASFI 248


>Medtr7g105340.3 | LETM1-like protein | HC | chr7:42698358-42709000
           | 20130731
          Length = 829

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 58  RYYTSLRKCSSL-------GASTN--LHFSCTDQNEEEEITNVTSSSQGMEFNRVDCVVW 108
           ++Y   RK  +L       G S N     S T  N + E   V  +   +E +  D ++ 
Sbjct: 74  KFYRPKRKVKNLLFVSSDEGVSVNEDSDGSSTSNNTDLEKMRVKLNRPLVEDDFCDRLLQ 133

Query: 109 VLHESARSFS-QAAESIGLARSGRGLAMAWIGKDVRVWHRRIAYQVAVYALLKTAIELEI 167
            L+++AR F  +  E   L+R     ++AW G D   W + ++YQ AVY+LL+ A E   
Sbjct: 134 CLYDAARVFELEIKEQNSLSRQS-WFSIAWFGVDRIAWEKTLSYQAAVYSLLQAASEFSS 192

Query: 168 LLSQERQNESSPVRNILTPLINQMGERIESQLKMKHPYLVQWFRDTKMPRMTGYFI 223
               + +N +  V+  L  L   +   I  +L  K P   +WF   ++P +   FI
Sbjct: 193 QSDGKDKNVNVFVQRSLLRLSAPLESIIREKLSAKQPKAYEWFWSKQVPAVVASFI 248


>Medtr7g105340.1 | LETM1-like protein | HC | chr7:42698358-42709000
           | 20130731
          Length = 881

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 58  RYYTSLRKCSSL-------GASTN--LHFSCTDQNEEEEITNVTSSSQGMEFNRVDCVVW 108
           ++Y   RK  +L       G S N     S T  N + E   V  +   +E +  D ++ 
Sbjct: 74  KFYRPKRKVKNLLFVSSDEGVSVNEDSDGSSTSNNTDLEKMRVKLNRPLVEDDFCDRLLQ 133

Query: 109 VLHESARSFS-QAAESIGLARSGRGLAMAWIGKDVRVWHRRIAYQVAVYALLKTAIELEI 167
            L+++AR F  +  E   L+R     ++AW G D   W + ++YQ AVY+LL+ A E   
Sbjct: 134 CLYDAARVFELEIKEQNSLSRQS-WFSIAWFGVDRIAWEKTLSYQAAVYSLLQAASEFSS 192

Query: 168 LLSQERQNESSPVRNILTPLINQMGERIESQLKMKHPYLVQWFRDTKMPRMTGYFI 223
               + +N +  V+  L  L   +   I  +L  K P   +WF   ++P +   FI
Sbjct: 193 QSDGKDKNVNVFVQRSLLRLSAPLESIIREKLSAKQPKAYEWFWSKQVPAVVASFI 248


>Medtr1g058390.1 | LETM1-like protein | HC | chr1:25720767-25707796
           | 20130731
          Length = 906

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 18/190 (9%)

Query: 67  SSLGASTNL-HFSCTDQNEEEEITNVTSSSQGMEFNRV------------DCVVWVLHES 113
           S +G S NL  F+ +D       +    +S  +E  RV            D +V  L+++
Sbjct: 75  SKMGRSVNLLPFATSDDGMAVNGSPQADASANLEKMRVKLNSSLEDEDFYDGLVQALYDA 134

Query: 114 ARSFSQAAESIGLARSGRGLAMAWIGKDVRVWHRRIAYQVAVYALLKTAIELEILLSQER 173
           AR F  A +    +      + AW+G D   W + ++ Q AVY+LL  A E+        
Sbjct: 135 ARVFELAIKDHKSSSRVSWFSTAWLGVDQTAWVKALSCQAAVYSLLYAASEISSRDDSRD 194

Query: 174 QNESSPVRNILTPLINQMGERIESQLKMKHPYLVQWFRDTKMPRMTGYFIPLLKQWSMEY 233
           +N +  V+  L  L   +   I   L  K P + +WF   ++P +   F+        E 
Sbjct: 195 RNVNVFVQRSLLRLSAPLESLIRENLSAKQPEVYEWFWSEQVPAVVTSFVN-----KFEG 249

Query: 234 AGRFIQKVWL 243
            GRF   + L
Sbjct: 250 DGRFTSAIAL 259