Miyakogusa Predicted Gene

Lj3g3v2310040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2310040.1 Non Characterized Hit- tr|I3T8D3|I3T8D3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.59,0,Ribosomal_S12,Ribosomal protein S12/S23; S23_S12_E_A:
ribosomal protein S23 (S12),Ribosomal protein ,CUFF.43770.1
         (142 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g066860.1 | 40S ribosomal protein S23-1 | HC | chr1:287355...   285   1e-77
Medtr1g066860.2 | 40S ribosomal protein S23-1 | HC | chr1:287355...   274   2e-74
Medtr7g100720.1 | 40S ribosomal protein S23-1 | HC | chr7:405820...   271   2e-73
Medtr7g061155.1 | 40S ribosomal protein S23-1 | HC | chr7:221196...   236   7e-63
Medtr7g063460.1 | ribosomal protein S12/S23 family protein | LC ...    67   5e-12
Medtr8g447270.1 | ribosomal protein S12/S23 family protein | LC ...    65   2e-11
Medtr4g038400.1 | ribosomal protein S12/S23 family protein | LC ...    61   4e-10
Medtr3g035660.1 | NAD(P)H-quinone oxidoreductase subunit 2 | HC ...    51   3e-07
Medtr0002s0280.1 | S12-like, 30S ribosomal protein S12 subfamily...    51   3e-07
Medtr1g052835.1 | ribosomal protein S12/S23 family protein | LC ...    51   3e-07
Medtr0625s0020.1 | S12-like, 30S ribosomal protein S12 subfamily...    47   4e-06
Medtr7g055840.1 | S12-like, 30S ribosomal protein S12 subfamily ...    47   5e-06

>Medtr1g066860.1 | 40S ribosomal protein S23-1 | HC |
           chr1:28735501-28737426 | 20130731
          Length = 142

 Score =  285 bits (728), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 141/142 (99%)

Query: 1   MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT GMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142


>Medtr1g066860.2 | 40S ribosomal protein S23-1 | HC |
           chr1:28735504-28737396 | 20130731
          Length = 136

 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 7   MGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66
           MGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 1   MGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60

Query: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120

Query: 127 VSLLALFKEKKEKPRS 142
           VSLLALFKEKKEKPRS
Sbjct: 121 VSLLALFKEKKEKPRS 136


>Medtr7g100720.1 | 40S ribosomal protein S23-1 | HC |
           chr7:40582049-40579972 | 20130731
          Length = 142

 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/142 (94%), Positives = 138/142 (97%)

Query: 1   MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAARKL+  R +QRWADK +KKSHLGNEWKKPF+GSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLRRLRIKQRWADKQFKKSHLGNEWKKPFSGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142


>Medtr7g061155.1 | 40S ribosomal protein S23-1 | HC |
           chr7:22119634-22118068 | 20130731
          Length = 255

 Score =  236 bits (601), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/118 (96%), Positives = 117/118 (99%)

Query: 25  KSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFV 84
           + +KKSHLGNEWKKPF+GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFV
Sbjct: 138 EQFKKSHLGNEWKKPFSGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFV 197

Query: 85  PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
           PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 198 PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 255


>Medtr7g063460.1 | ribosomal protein S12/S23 family protein | LC |
           chr7:23127907-23127170 | 20130731
          Length = 88

 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 42  GSSHAKGIVLEKI-GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 100
           GS   K  ++  I GI+ K PN AIRKC +VQL KNGKK  A    D CLNYIE+ D  +
Sbjct: 15  GSKERKPEIMSSIMGIKFKHPNFAIRKCVKVQLTKNGKKTLAL--QDSCLNYIEDEDVDM 72

Query: 101 IAGFGRKG 108
           I GF RKG
Sbjct: 73  IIGFRRKG 80


>Medtr8g447270.1 | ribosomal protein S12/S23 family protein | LC |
           chr8:18567238-18565505 | 20130731
          Length = 117

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 38/53 (71%), Gaps = 2/53 (3%)

Query: 54  IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR 106
           +GI+ KQPNSAI KCARVQLIKNGKK       D  LNYIE+ D  +I GFGR
Sbjct: 17  MGIKFKQPNSAICKCARVQLIKNGKKTLPL--QDDSLNYIEDGDVDVITGFGR 67


>Medtr4g038400.1 | ribosomal protein S12/S23 family protein | LC |
           chr4:16320018-16321173 | 20130731
          Length = 149

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 36/49 (73%), Gaps = 3/49 (6%)

Query: 56  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF 104
           I+AKQPNSAIRK  RVQLIKNGKK   F+PN G L Y +   E LIAGF
Sbjct: 103 IKAKQPNSAIRKGTRVQLIKNGKKTIVFMPNHGYLCYFK---EALIAGF 148


>Medtr3g035660.1 | NAD(P)H-quinone oxidoreductase subunit 2 | HC |
           chr3:13225940-13230352 | 20130731
          Length = 871

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 9   AARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAG---SSHAKGIVLEKIGIEAKQPNSAI 65
           AA  L   R+  R     + +    NE K P      +     + +    I  K+PNSA+
Sbjct: 39  AAFLLGPQRQNGRLVPTVHHEWRFSNEEKDPITSKELNEDKDDLSVNFSTITPKKPNSAL 98

Query: 66  RKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
           RK ARV+L  +G +I A++P  G  + ++E+  VL+ G GR    V D+PGVR+ +V+
Sbjct: 99  RKVARVRL-TSGFEITAYIPGIG--HNLQEHSVVLVRG-GR----VKDLPGVRYHIVR 148


>Medtr0002s0280.1 | S12-like, 30S ribosomal protein S12 subfamily
           protein | LC | scaffold0002:188707-190966 | 20130731
          Length = 159

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 15/109 (13%)

Query: 22  WADKSYKKSHLGNEWKKPF-------AGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLI 74
           +A  S     L  +  KP        AG      + ++   I  K+PNSA+RK ARV+L 
Sbjct: 40  FATSSIANPTLSRQSHKPLIHSRSLVAGEDSKGDLSVDFSTINPKKPNSALRKVARVRL- 98

Query: 75  KNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
            +G +I A++P  G  + ++E+  VL+ G GR    V D+PGVR+++++
Sbjct: 99  TSGFEITAYIPGIG--HNLQEHSVVLVRG-GR----VKDLPGVRYRIIR 140


>Medtr1g052835.1 | ribosomal protein S12/S23 family protein | LC |
          chr1:21901324-21901028 | 20130731
          Length = 98

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 28/32 (87%)

Query: 54 IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 85
          + I+AKQPNSAIRK  ++QLIKNGKKIAAF P
Sbjct: 65 VDIKAKQPNSAIRKGTKIQLIKNGKKIAAFRP 96


>Medtr0625s0020.1 | S12-like, 30S ribosomal protein S12 subfamily
           protein | HC | scaffold0625:8621-8328 | 20130731
          Length = 97

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 8/68 (11%)

Query: 56  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 115
           I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+ G GR    V D+P
Sbjct: 14  ITPKKPNSALRKVARVRLT-SGFEIIAYIPGIG--HNLQEHSVVLVRG-GR----VKDLP 65

Query: 116 GVRFKVVK 123
           GVR+ +V+
Sbjct: 66  GVRYHIVR 73


>Medtr7g055840.1 | S12-like, 30S ribosomal protein S12 subfamily
           protein | HC | chr7:18993088-18993369 | 20130731
          Length = 93

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 8/68 (11%)

Query: 56  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 115
           +  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+ G GR    V D+P
Sbjct: 10  LPLKKPNSALRKVARVRL-TSGFEIIAYIPGIG--HNLQEHSVVLVRG-GR----VKDLP 61

Query: 116 GVRFKVVK 123
           GVR+ +V+
Sbjct: 62  GVRYHIVR 69