Miyakogusa Predicted Gene
- Lj3g3v2309770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2309770.1 tr|G7JRG7|G7JRG7_MEDTR IBR domain containing
protein OS=Medicago truncatula GN=MTR_4g060940 PE=4
SV=,68.37,0,IBR,Zinc finger, C6HC-type; RVT_3,NULL; no
description,Zinc finger, RING/FYVE/PHD-type; RING/U-box,N,CUFF.43759.1
(552 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g028870.1 | C6HC-type zinc finger RING/U-box protein | HC ... 153 3e-37
Medtr3g462590.1 | zinc finger, C3HC4 type (RING finger) protein ... 117 4e-26
Medtr3g462570.1 | IBR domain protein | LC | chr3:25014064-250187... 112 9e-25
Medtr1g105460.1 | zinc finger protein | HC | chr1:47460119-47461... 111 2e-24
Medtr2g044240.1 | zinc finger protein | LC | chr2:19247271-19249... 106 5e-23
Medtr3g463280.1 | E3 ubiquitin-protein ligase RNF144A-like prote... 105 9e-23
Medtr8g022900.1 | C6HC-type zinc finger RING/U-box protein | LC ... 105 1e-22
Medtr2g044420.1 | C6HC-type zinc finger RING/U-box protein | LC ... 102 1e-21
Medtr5g062990.1 | zinc finger, C3HC4 type (RING finger) protein ... 101 2e-21
Medtr0777s0010.1 | E3 ubiquitin-protein ligase RNF144A-like prot... 100 4e-21
Medtr4g063815.1 | C6HC-type zinc finger RING/U-box protein | HC ... 99 1e-20
Medtr5g078410.1 | IBR domain protein | LC | chr5:33533166-335319... 96 1e-19
Medtr2g044440.1 | zinc finger, C3HC4 type (RING finger) protein ... 93 5e-19
Medtr2g044250.1 | zinc finger protein | LC | chr2:19254401-19255... 93 8e-19
Medtr2g044290.1 | C6HC-type zinc finger RING/U-box protein | LC ... 92 9e-19
Medtr3g463310.2 | C6HC-type zinc finger RING/U-box protein | HC ... 91 2e-18
Medtr3g463310.1 | C6HC-type zinc finger RING/U-box protein | HC ... 91 2e-18
Medtr3g462530.1 | IBR domain protein | LC | chr3:24990527-249919... 87 5e-17
Medtr1g105465.1 | RING zinc finger protein, putative | LC | chr1... 84 3e-16
Medtr1g105450.1 | C6HC-type zinc finger RING/U-box protein | HC ... 84 4e-16
Medtr3g462560.1 | IBR domain protein | LC | chr3:25012934-250138... 80 6e-15
Medtr3g014030.1 | helicase, IBR and zinc finger protein | HC | c... 75 1e-13
Medtr1g037750.1 | helicase, IBR and zinc finger protein | HC | c... 74 3e-13
Medtr2g044260.1 | zinc finger, C3HC4 type (RING finger) protein,... 73 6e-13
Medtr3g462500.1 | zinc finger, C3HC4 type (RING finger) protein ... 72 1e-12
Medtr3g086770.1 | helicase, IBR and zinc finger protein | HC | c... 70 6e-12
Medtr4g063810.1 | zinc finger protein | HC | chr4:23694274-23695... 70 6e-12
Medtr3g462430.1 | IBR domain protein | HC | chr3:24928915-249311... 67 4e-11
Medtr3g055420.1 | zinc finger, C3HC4 type (RING finger) protein ... 60 7e-09
Medtr3g055400.1 | IBR domain protein | LC | chr3:21788463-217877... 60 8e-09
Medtr2g038640.1 | zinc finger, C3HC4 type (RING finger) protein ... 58 3e-08
Medtr3g055430.1 | IBR domain protein | LC | chr3:21796452-217934... 53 7e-07
Medtr3g462490.1 | IBR domain protein | LC | chr3:24974219-249717... 50 8e-06
>Medtr2g028870.1 | C6HC-type zinc finger RING/U-box protein | HC |
chr2:10740321-10734195 | 20130731
Length = 520
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 169/371 (45%), Gaps = 14/371 (3%)
Query: 153 RVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSXXXXXXXXXX 212
R++FKGL N S GIG+ + ++ + V K L
Sbjct: 67 RMFFKGLSITGVENSTSG---FSGIGVFMERSSNLPPIRVQK-RLDFYAEEPMVDYLALM 122
Query: 213 XXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPRLV 272
A+ ++RV + D LL ++ + ++ L L + F + +L+
Sbjct: 123 DGLLEALQNKIRRVYAFTD-SELLFKITAEKNLDMPLLMALRERILEHANNFETFDLKLI 181
Query: 273 ARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYC 332
DL+ +LA A+ + + L E C IC +D + ++ C H +C
Sbjct: 182 PSIDLEQPMQLATVAM-----GLVTFPVNDEKLLENCSICCDDKPVPMMITLK-CSHTFC 235
Query: 333 FSCVKQHVEVKLLHGMVP-KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTD 391
C++ + + KL VP +CP GC + C+ FLP E++++ EA+I ++
Sbjct: 236 SHCLRSYADGKLQCCQVPIRCPQPGCRYCISTPECKSFLPFISFESLEKALSEANIAQSE 295
Query: 392 KIYCPYPRCSALMSKTEVLE-YSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRY 450
+ YCP+P CS L+ E L + + S+ VPWH MSC +
Sbjct: 296 RFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVGCGVPWHSSMSCEEF 355
Query: 451 KML-NPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWK 509
+ L A D+ L LA + W++C +C MIEL +GCYH+TCRCG+EFCY CGAE++
Sbjct: 356 QSLPEEERDASDITLHRLAQNKRWKRCQQCRIMIELTQGCYHMTCRCGHEFCYSCGAEYR 415
Query: 510 DKKATCDCPLW 520
D + TC C W
Sbjct: 416 DGQQTCQCAFW 426
>Medtr3g462590.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr3:25026751-25027788 | 20130731
Length = 300
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 14/213 (6%)
Query: 299 GSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHEGC 357
G S+KS +C IC + +++ F+ C H +C +C+ +V+V+ +V CP+ C
Sbjct: 89 GQSSKSF--SCGICFDSVTVSKMFTTSSCNHPFCTNCISMYVDVQRKENVVKLNCPNPDC 146
Query: 358 NNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLT 417
+ EL + +P ++I + E+SI + K+YCPY CS L+ EV + +T
Sbjct: 147 SVELKPEHVESIIPKQVIVEWESAIYESSIAMMQKMYCPYENCSLLLVNDEV----EVVT 202
Query: 418 GSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLK--SLATSSFWRQ 475
E VPWH +M+C ++ N E L+ K LA S W++
Sbjct: 203 SCE-----CPSCHRLFCAQCKVPWHTNMNCQEFQEWKDNQDEEQLERKFLELANSEKWQR 257
Query: 476 CVKCNHMIELAEGCYHITCRCGNEFCYQCGAEW 508
C KC+ ++ GC H+ CRCG FCY CG++W
Sbjct: 258 CPKCSMHVQRNGGCEHMRCRCGCNFCYNCGSDW 290
>Medtr3g462570.1 | IBR domain protein | LC | chr3:25014064-25018785
| 20130731
Length = 576
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 15/230 (6%)
Query: 290 SQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMV 349
S++ + E G S+K C IC + + FS C H +C C+ ++V++++ +V
Sbjct: 30 SKTKTAIEQGQSSKI---CCGICFDSVTNSNMFSTGLCNHPFCTKCISKYVKIEIKEKVV 86
Query: 350 P-KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTE 408
KCP C+ EL + + LP K+I + EASI + +K YCPY CS L+ E
Sbjct: 87 KIKCPDPECSVELKPEHLQCILPKKIIVDWESANCEASIALKEKFYCPYKNCSLLLVNDE 146
Query: 409 VLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKM--LNPNPPAEDLKLKS 466
+ +T E VPWH +M+C ++ + D K
Sbjct: 147 A---GRAITSCE-----CPYCHRLFCAQCKVPWHGNMNCQEFEKSEIGQGLKQSDRKFLE 198
Query: 467 LATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATCD 516
LA W++C KC+ ++ GC H+ CRCG FCY CG +W D TC+
Sbjct: 199 LAKREKWKRCPKCSMHVQRTTGCEHMRCRCGCHFCYICGRDW-DGFHTCN 247
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 384 EASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHF 443
E+SI + KIYCPY CS L+ V + + +T E VPWH
Sbjct: 420 ESSIVLRQKIYCPYKNCSLLL----VNDGLEGVTSCE-----CPSCHRLFCAQCEVPWHA 470
Query: 444 DMSCYRYKMLNP--NPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFC 501
D C +++ D KL LA + W++C +C+ +E GC + CRCG FC
Sbjct: 471 DKKCRQFQKSKKVLGEKQLDKKLAQLAKTEMWQKCPRCSIHVEKTLGCDFMKCRCGCYFC 530
Query: 502 YQCGAEWKD 510
Y CG ++K+
Sbjct: 531 YTCGKKFKE 539
>Medtr1g105460.1 | zinc finger protein | HC | chr1:47460119-47461939
| 20130731
Length = 307
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 327 CQHRYCFSCVKQHVEVKLLHGMVP-KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEA 385
C H +C CV + V K+ + CP C L +SCRK LP +LI+ EA
Sbjct: 121 CYHSFCSECVVKQVATKIQDNITNVSCPGLNCKGVLELESCRKLLPKELIDKWNDALCEA 180
Query: 386 SIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDM 445
K YCP+ CSA++ + E +++ SE VPWH +
Sbjct: 181 FFLTVPKFYCPFKDCSAMLLDED--EGREDVRESE-----CASCHRLFCAKCHVPWHPGI 233
Query: 446 SCYRYKMLNPNPPA-EDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQC 504
C Y+ LN + EDL ++ LA W++C +C +E +GC HITCRC EFCY C
Sbjct: 234 GCEEYQKLNVDERGREDLLVRELANKKKWKRCPRCRFYVEKRDGCLHITCRCKFEFCYSC 293
Query: 505 GAEWKDKKATC 515
GA+W C
Sbjct: 294 GAQWTSSHGGC 304
>Medtr2g044240.1 | zinc finger protein | LC | chr2:19247271-19249620
| 20130731
Length = 268
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 309 CVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHEGCNNELLADSCR 367
C IC E +N F++ GC H +C C +++ KL + CP C+ L A C+
Sbjct: 68 CEICCESKPLNDSFNIQGCTHFFCTKCTIKYIVSKLQENKLNLNCPESSCSGVLNAQYCK 127
Query: 368 KFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEP-GXXXX 426
LP+K+++ ++ E+ IP +K YCP+ CSAL+ S+N SE
Sbjct: 128 PILPNKVLDWWEKSLSESVIPEENKFYCPFYDCSALL-------ISENNQKSEVIAQCIC 180
Query: 427 XXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELA 486
PWH +MSC +++ L ++D + LA W++C C IE +
Sbjct: 181 PHCKRIICVQCKTPWHQEMSCEKFQKLKH---SDDELMFDLANRRKWKKCPLCKQFIEKS 237
Query: 487 EGCYHITCRCGNEFCYQCG 505
EGC H+ CRC ++FCY+CG
Sbjct: 238 EGCNHMKCRCSHKFCYECG 256
>Medtr3g463280.1 | E3 ubiquitin-protein ligase RNF144A-like protein,
putative | LC | chr3:25334962-25333661 | 20130731
Length = 266
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 287 AIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDG-------CQHRYCFSCVKQH 339
AI+ + S + S T + K+ C IC E + FS+ C+H +C C+ ++
Sbjct: 3 AILGRKKSSKKVTSHTHAAKKQCGICFELKTDYEIFSIRSTILKRRKCKHFFCVECICKY 62
Query: 340 VEVKLLHG-MVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYP 398
VEV++ + CP C + LP K+ + + E SIP K YCP+
Sbjct: 63 VEVEINENPLKVMCPSPNCCVKYNPKHFNHILPKKVFDKWEYLISEFSIPSEKKTYCPFE 122
Query: 399 RCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLN-PNP 457
CS L+ K +++E + S+ VPWH MSC R++ + NP
Sbjct: 123 NCSVLLDKEDLIEKDVDKCSSK-----CPSCHRRFCAKCKVPWHGGMSCERFQAIKRSNP 177
Query: 458 PAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAE 507
D LA S W++C C+ ++ GC +I CRCG +FCY CG +
Sbjct: 178 NDLDTIFLELAKSEMWQRCPHCSMFVKRVHGCSYIQCRCGCKFCYDCGKK 227
>Medtr8g022900.1 | C6HC-type zinc finger RING/U-box protein | LC |
chr8:8149583-8148268 | 20130731
Length = 270
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 30/257 (11%)
Query: 277 LKYAFKLARDAIVSQST------RSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHR 330
+ A K A+ I+ Q R+ + S + C IC+E+ I + F C H
Sbjct: 25 ISRALKQAQKEILKQEQEEPLILRAFKQAQKKISQLKPCGICMENKPIEKMFKSRNCSHS 84
Query: 331 YCFSCVKQHVEVKLLHGMVP-KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPV 389
+C CV + + VK+ KCP CN+ C +P + E L S+
Sbjct: 85 FCEDCVARFLAVKIQEKKATIKCPDPNCNSNFDTQQCISIIPKDVFERWGD-ALVDSMFG 143
Query: 390 TDKIYCPYPRCSALMSK--TEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSC 447
+ KIYCP+ CSA++ EV+ ++ VPWH ++ C
Sbjct: 144 SKKIYCPFKDCSAMLVNDGNEVVRITE-----------CPHCHRLFCAQCQVPWHTEVDC 192
Query: 448 YRYKMLNPNPPAEDLKLKSL--ATSSFWRQCVKCNHMIELAEGCYHITCR-------CGN 498
+++L P +DL L +L A W++C +CN +E GC HI C CG+
Sbjct: 193 REFQILKKGGPRKDLDLMALELAKKKKWKRCPRCNFYVEKKGGCNHIRCSYKVFVILCGH 252
Query: 499 EFCYQCGAEWKDKKATC 515
+FCY CG++WK+ C
Sbjct: 253 QFCYGCGSKWKNNFHEC 269
>Medtr2g044420.1 | C6HC-type zinc finger RING/U-box protein | LC |
chr2:19314343-19315173 | 20130731
Length = 276
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 92/205 (44%), Gaps = 17/205 (8%)
Query: 297 EAGSSTKSLKE--TCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCP 353
E G S+ S C IC + + F + GC H YC CV ++ KL +V +CP
Sbjct: 73 EKGESSNSNNTPFVCEICTDTKTMKDAFYISGCSHVYCSDCVAMYIGSKLEENIVKIQCP 132
Query: 354 HEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALM--SKTEVLE 411
GC L AD CR LP K+ E + EA V++K YCP+P CSAL+ TE +
Sbjct: 133 FPGCKGSLEADFCRSILPAKVFERWGKALCEALFDVSNKFYCPFPDCSALLIDDGTEAVR 192
Query: 412 YSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPN-PPAEDLKLKSLATS 470
S+ + VPWH C + + LN + ED+ L LA
Sbjct: 193 NSECPNCNR-----------MFCAQCKVPWHEGFKCNKVEKLNADETKKEDVMLMRLAKK 241
Query: 471 SFWRQCVKCNHMIELAEGCYHITCR 495
W +C KC + + GC H+ CR
Sbjct: 242 KKWMRCPKCRIYVARSMGCDHMVCR 266
>Medtr5g062990.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr5:26103678-26104792 | 20130731
Length = 306
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 16/216 (7%)
Query: 297 EAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHE 355
E G S+KS C IC + F+ C H +C +C+ ++V V+ +V CP
Sbjct: 95 EQGESSKSF--NCGICFDSVKNTNMFTASSCNHPFCTNCISKYVAVQREKDVVKVNCPEP 152
Query: 356 GCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEV----LE 411
C EL ++ + FLP K+I + E+SI YCPY CS SK + L
Sbjct: 153 ECIVELKLETLQYFLPKKVIADWEYAIFESSIYTKQIFYCPYNNCSLFPSKKKKNCSRLM 212
Query: 412 YSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSS 471
+ +T E VPWH DM+C + + D+K LA
Sbjct: 213 VEEGVTSCE-----CPSCHGLICAQCKVPWHSDMNCQEFM----DEKHMDMKFLELAKRE 263
Query: 472 FWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAE 507
W++C +C+ ++ +GC +TCRCG FCY+CG +
Sbjct: 264 KWQRCPRCSMYVQRRDGCKQMTCRCGCPFCYRCGKD 299
>Medtr0777s0010.1 | E3 ubiquitin-protein ligase RNF144A-like
protein, putative | LC | scaffold0777:2712-1196 |
20130731
Length = 456
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 15/215 (6%)
Query: 299 GSSTKSLKETCVICLE-DTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHEG 356
G S++S +C IC + TD++ F C H +C C+ ++V+ +L + +V CP
Sbjct: 240 GESSRS---SCGICFDLKTDLD-MFKRKSCNHLFCVDCISKYVDSQLNNNVVKVTCPTPN 295
Query: 357 CNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNL 416
C+ +LL + LP + I+ + K E+ I + K YC + CS L+ + N
Sbjct: 296 CSAKLLPRHLQHILPKEFIDRWELAKYESKIALEQKTYCAFKDCSVLL-------VNDND 348
Query: 417 TGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDL--KLKSLATSSFWR 474
G VPWH +M+C ++ L N DL K LA + W+
Sbjct: 349 RGEVLTSCECPSCHRLFYAQCKVPWHAEMNCQEFQDLKHNTNEVDLDDKFLKLAKRNKWQ 408
Query: 475 QCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWK 509
+C C+ ++ GC H+ CRC FCY CG +WK
Sbjct: 409 RCPNCSIYVKRRSGCEHMKCRCKCNFCYLCGKKWK 443
>Medtr4g063815.1 | C6HC-type zinc finger RING/U-box protein | HC |
chr4:23696461-23697413 | 20130731
Length = 258
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 11/199 (5%)
Query: 313 LEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGM-VPKCPHEGCNNELLADSCRKFLP 371
+E + F C H +C CV ++ K+ + + KCP+ CN L +C +P
Sbjct: 59 VESKPAAEMFENQNCSHSFCEGCVGSYLAAKIQENIAMVKCPYPNCNGILEPHNCSTLIP 118
Query: 372 HKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXX 431
+ E + E + + K+YCP+ CSA++ E + +T SE
Sbjct: 119 KDVFERWGKALCENMVLDSQKLYCPFNDCSAMLVNDE----EEVVTVSE-----CPHCNR 169
Query: 432 XXXXXXXVPWHFDMSCYRYKMLNPNPPA-EDLKLKSLATSSFWRQCVKCNHMIELAEGCY 490
V WH + C ++ L +DL LA + W++C KC+ +E EGC
Sbjct: 170 LFCAQCKVSWHSGVDCREFQSLEDGERGRKDLMAMELAKNKRWKRCPKCSFYVEKIEGCT 229
Query: 491 HITCRCGNEFCYQCGAEWK 509
I+CRCGN+FCY CG+ W
Sbjct: 230 RISCRCGNQFCYGCGSTWN 248
>Medtr5g078410.1 | IBR domain protein | LC | chr5:33533166-33531953
| 20130731
Length = 340
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 117/272 (43%), Gaps = 42/272 (15%)
Query: 245 VNQQKLARLVNEVYLLQRKFTYCNPRLVA------RHDLKYAFKLARDAIVSQSTRSAEA 298
V + L++ +++ Y +K T N + V R+ +K F L R ++ E
Sbjct: 95 VKRNSLSQDLDDEYEENKKATTGNNKQVQIKPERNRNKIKIIFLLKR-----KTKTVIEQ 149
Query: 299 GSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCN 358
G S+K C IC + + FS GC H +C C+ C +
Sbjct: 150 GQSSKIF---CGICFDSVTDSNMFST-GCNHPFCTKCI---------------CKYNVPY 190
Query: 359 NELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTG 418
EL + + LP K+I + E SI + DKIYCPY CS LM V + + +T
Sbjct: 191 VELKPEHLQYILPKKIIVDWESANCENSISLKDKIYCPYNNCSLLM----VNDAACAVTS 246
Query: 419 SEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRY-KMLNPNPPAEDLKLKSLATSSFWRQCV 477
E VPWH DM+C ++ K ++ N D LA W++C
Sbjct: 247 CE-----CSSCHRLFCVQCKVPWHTDMNCRQFQKSMSEN--QLDKNFLKLAKREKWQRCP 299
Query: 478 KCNHMIELAEGCYHITCRCGNEFCYQCGAEWK 509
KC+ ++ GC H+ CRCG FCY CG W+
Sbjct: 300 KCSMHVQKTGGCMHMHCRCGFHFCYMCGRHWQ 331
>Medtr2g044440.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:19326432-19327307 | 20130731
Length = 291
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 11/203 (5%)
Query: 295 SAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCP 353
S++ S+ + C IC E + F + GC H YC CV +V K+ ++ +CP
Sbjct: 82 SSKQNSNPNEVPFFCEICTETKTTKEAFFITGCNHAYCSDCVVLYVRSKIEENVINVRCP 141
Query: 354 HEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYS 413
GC+ L A+ CR LP + + + EA V +K YCP+P CSAL+ + + +
Sbjct: 142 ESGCSGLLEAEECRAILPVEDFDRWGKALCEAMFDVNEKFYCPFPDCSALL----INDGT 197
Query: 414 KNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAE-DLKLKSLATSSF 472
+ + SE V WH + C ++ LN + + D+ L LA
Sbjct: 198 EAVLQSE-----CPNCRRLFCAQCKVSWHDGIGCSEFQKLNADERGKNDIMLMKLAKEKQ 252
Query: 473 WRQCVKCNHMIELAEGCYHITCR 495
W++C C + + +EGC ++ CR
Sbjct: 253 WKRCPNCKYYVAKSEGCLYMKCR 275
>Medtr2g044250.1 | zinc finger protein | LC | chr2:19254401-19255308
| 20130731
Length = 261
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 11/208 (5%)
Query: 290 SQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMV 349
+ +T E SS+K C IC + + F ++GC H YC CV ++ KL ++
Sbjct: 50 NNNTEKGECASSSKDELFFCEICTDMKTMKDVFCINGCSHSYCSDCVAMYIGSKLKDNII 109
Query: 350 P-KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTE 408
+CP GC+ L +D C+ LP ++ + E I ++K YCP+ CSAL+ E
Sbjct: 110 NIRCPFSGCSGLLESDYCQSILPAEVFDRWGNASCEVLIDDSEKFYCPFADCSALLINDE 169
Query: 409 VLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNP-PAEDLKLKSL 467
K VPWH + C ++ LN + ED+ L L
Sbjct: 170 TEAVMK---------AECPYCERMFCAQCKVPWHEGIECSEFETLNADEREKEDVMLVGL 220
Query: 468 ATSSFWRQCVKCNHMIELAEGCYHITCR 495
A W +C C + + GC + CR
Sbjct: 221 AKDKKWMRCPNCRIYVAKSHGCNSMKCR 248
>Medtr2g044290.1 | C6HC-type zinc finger RING/U-box protein | LC |
chr2:19270076-19270864 | 20130731
Length = 262
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 11/190 (5%)
Query: 308 TCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHEGCNNELLADSC 366
C IC + + + GC H YC CV ++ KL +V +CP C L A+ C
Sbjct: 79 VCEICTDTKTMKDAIYISGCSHAYCSDCVASYIGSKLEDNIVNIRCPFPKCKGSLEAEFC 138
Query: 367 RKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXX 426
R LP ++ + Q EA V++K YCP+ CSAL+ + ++ KN
Sbjct: 139 RFILPAEVFDRWGQGLCEAMFDVSEKFYCPFADCSALLI-NDGIDTVKN--------SEC 189
Query: 427 XXXXXXXXXXXXVPWHFDMSCYRYKMLNPNP-PAEDLKLKSLATSSFWRQCVKCNHMIEL 485
VPWH + C ++ LN + ED+ L LA WR+C KC +
Sbjct: 190 PNCNRMFCAKCKVPWHEGIECSEFEKLNADERKKEDVMLMRLAKDKKWRRCPKCRIYVAK 249
Query: 486 AEGCYHITCR 495
+EGC + CR
Sbjct: 250 SEGCNSMLCR 259
>Medtr3g463310.2 | C6HC-type zinc finger RING/U-box protein | HC |
chr3:25346747-25345141 | 20130731
Length = 237
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 15/230 (6%)
Query: 287 AIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDG-------CQHRYCFSCVKQH 339
++ + S + S K+TC IC + + F++ C H +C C+ ++
Sbjct: 4 SLFGKKDSSKQISSDAHEAKKTCGICFDTKTDSDIFNIRSTILKRRKCNHLFCVDCICKY 63
Query: 340 VEVKLLHGMVPK-CPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYP 398
VEV++ CP C + + LP +LI + E S P K YCPY
Sbjct: 64 VEVQINDNAYKVLCPSPNCFVKYKPKHLKHILPKQLIVKWEFLASELSKPSEPKTYCPYA 123
Query: 399 RCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPP 458
CS L+ K + N + P VPWH M+C +++ N
Sbjct: 124 NCSVLLGKENDIGREFNSSSRCPSCHRQFCAKCK------VPWHAGMNCQKFQQFKRNDK 177
Query: 459 AE-DLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAE 507
+ D K LA W++C C ++ + GC + CRCG +FCY+CG +
Sbjct: 178 NDLDKKFLVLAKEQQWKRCPNCFMYVKKSAGCSLMKCRCGCKFCYKCGKK 227
>Medtr3g463310.1 | C6HC-type zinc finger RING/U-box protein | HC |
chr3:25346747-25344649 | 20130731
Length = 237
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 15/230 (6%)
Query: 287 AIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDG-------CQHRYCFSCVKQH 339
++ + S + S K+TC IC + + F++ C H +C C+ ++
Sbjct: 4 SLFGKKDSSKQISSDAHEAKKTCGICFDTKTDSDIFNIRSTILKRRKCNHLFCVDCICKY 63
Query: 340 VEVKLLHGMVPK-CPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYP 398
VEV++ CP C + + LP +LI + E S P K YCPY
Sbjct: 64 VEVQINDNAYKVLCPSPNCFVKYKPKHLKHILPKQLIVKWEFLASELSKPSEPKTYCPYA 123
Query: 399 RCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPP 458
CS L+ K + N + P VPWH M+C +++ N
Sbjct: 124 NCSVLLGKENDIGREFNSSSRCPSCHRQFCAKCK------VPWHAGMNCQKFQQFKRNDK 177
Query: 459 AE-DLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAE 507
+ D K LA W++C C ++ + GC + CRCG +FCY+CG +
Sbjct: 178 NDLDKKFLVLAKEQQWKRCPNCFMYVKKSAGCSLMKCRCGCKFCYKCGKK 227
>Medtr3g462530.1 | IBR domain protein | LC | chr3:24990527-24991932
| 20130731
Length = 316
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 351 KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVL 410
KCP C+ EL + + LP K+I + EASI + +K YCPY CS L+ E
Sbjct: 45 KCPDPECSVELKPEHLQCILPKKIIVDWESANCEASIALKEKFYCPYKNCSLLLVNDEA- 103
Query: 411 EYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKM--LNPNPPAEDLKLKSLA 468
+ +T E VPWH +M+C ++ + D K LA
Sbjct: 104 --GRAITSCE-----CPYCHRLFCAQCKVPWHGNMNCQEFEKSEIGQGLKQSDRKFLELA 156
Query: 469 TSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEW 508
W++C KC+ ++ GC H+ CRCG FCY CG +W
Sbjct: 157 KREKWKRCPKCSMHVQRTTGCEHMRCRCGCHFCYMCGRDW 196
>Medtr1g105465.1 | RING zinc finger protein, putative | LC |
chr1:47466726-47468888 | 20130731
Length = 341
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 21/197 (10%)
Query: 308 TCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHEGCNNELLADSC 366
C IC E ++ F C H +C CV + V K+ + CP C L +SC
Sbjct: 145 VCEICAETKTTDEMFRNLRCYHSFCSECVVKQVATKIQDNITNVSCPGLNCKGVLELESC 204
Query: 367 RKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXX 426
R LP +LI+ EA K YCP+ CSA+M E +++ SE
Sbjct: 205 RSLLPKELIDRWNDALCEAFFLAVPKFYCPFKDCSAMMLDEN--EDGQDIRESE------ 256
Query: 427 XXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPA-EDLKLKSLATSSFWRQCVKCNHMIEL 485
V WH + C ++ +N + EDL ++ LA W++C +C +E
Sbjct: 257 ----------CHVTWHPRVGCEEFQTMNVDERGREDLLVRELANKKKWKRCPRCRFYVEK 306
Query: 486 AEGCYHITCRCGNEFCY 502
+GC HI+ R G +
Sbjct: 307 NDGCLHIS-RAGANLSF 322
>Medtr1g105450.1 | C6HC-type zinc finger RING/U-box protein | HC |
chr1:47455571-47456145 | 20130731
Length = 146
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 369 FLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSA-LMSKTEVLEYSKNLTGSEPGXXXXX 427
LP +L + EA K YCP+ CSA L+ + E +E ++ SE
Sbjct: 3 LLPKELFDKWNDALCEALFVTVPKFYCPFKDCSAMLLDENEGVE---DIRESE-----CP 54
Query: 428 XXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPA-EDLKLKSLATSSFWRQCVKCNHMIELA 486
VPWH + C Y+ LN + EDL ++ LA WR+C C +E
Sbjct: 55 FCHRLFCARCHVPWHPGIDCEEYQTLNADERGREDLLVRELANEKKWRRCPTCKFYVEKT 114
Query: 487 EGCYHITCRCGNEFCYQCGAEWKDKKATC 515
EGC HITCRC EFCY CG +W C
Sbjct: 115 EGCLHITCRCRFEFCYACGEQWTSTHGGC 143
>Medtr3g462560.1 | IBR domain protein | LC | chr3:25012934-25013848
| 20130731
Length = 252
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Query: 297 EAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHE 355
E G S+K C ICL ++++ FS C H +C + ++ ++++ +V KCP
Sbjct: 44 EQGQSSKIF---CGICLTNSNM---FSTGLCNHPFCTISISKYAKIQIKEKVVKVKCPDP 97
Query: 356 GCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKN 415
C+ EL + + LP+++I + EASI + +KIYCPY CS L+ V + +
Sbjct: 98 ECSVELKQEHLQSILPNEIIVDWESANCEASIALKEKIYCPYKNCSLLL----VNDEAGA 153
Query: 416 LTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKM--LNPNPPAEDLKLKSLATSSFW 473
+T E VPWH +M+C ++ + D K LA W
Sbjct: 154 VTSCE-----CPSCHRLFCAQCKVPWHANMNCQEFQNSEIGQGLKQSDRKFLELAKREKW 208
Query: 474 RQCVKCNHMIELAEGCYHIT 493
++C KC+ ++ GC +T
Sbjct: 209 KRCPKCSMHVQRTTGCVAVT 228
>Medtr3g014030.1 | helicase, IBR and zinc finger protein | HC |
chr3:3875260-3882505 | 20130731
Length = 1731
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 308 TCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLH-GMVP-KCPHEGCNNELLADS 365
+C ICL ++ + ++GC H +C SC+ + E + + G P +C H+GC N +L
Sbjct: 1521 SCPICL--CEVEDGYQLEGCGHLFCQSCMVEQCESAIKNQGSFPIRCAHQGCGNHILLVD 1578
Query: 366 CRKFLPHKLIETMQQRKLEASIPVTDKIY--CPYPRCSALMSKTEVLEYSKNLTGSEPGX 423
R L + +E + + L A + + Y CP P C + + + T S P
Sbjct: 1579 FRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPS------IYRVADPDTASAP-- 1630
Query: 424 XXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFW-RQCVKCNHM 482
+ +H +SC RY+ +P D L+ + C C H+
Sbjct: 1631 FVCGACYSETCTRCHIEYHPYVSCERYRQFKDDP---DSSLRDWCKGKEQVKNCPACGHV 1687
Query: 483 IELAEGCYHITCRCGNEFCYQC 504
IE +GC HI C+CG C+ C
Sbjct: 1688 IEKVDGCNHIECKCGKHICWVC 1709
>Medtr1g037750.1 | helicase, IBR and zinc finger protein | HC |
chr1:14013123-14010559 | 20130731
Length = 434
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 308 TCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLH-GMVP-KCPHEGCNNELLADS 365
+C ICL ++ + ++GC H +C SC+ + E + + G P +C H+GC N +L
Sbjct: 224 SCPICL--CEVEDGYQLEGCGHLFCRSCMVEQCESAIKNQGSFPIRCAHQGCGNHILLVD 281
Query: 366 CRKFLPHKLIETMQQRKLEASIPVTDKIY--CPYPRCSALMSKTEVLEYSKNLTGSEPGX 423
R L + +E + + L A + + Y CP P C + + + T S P
Sbjct: 282 FRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPS------IYRVADPDTASVP-- 333
Query: 424 XXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFW-RQCVKCNHM 482
+ +H +SC RY+ +P D L+ + C C H+
Sbjct: 334 FVCGACYSETCTRCHIEYHPYVSCERYRQFKDDP---DSSLRDWCKGKEQVKNCPACGHV 390
Query: 483 IELAEGCYHITCRCGNEFCYQC 504
IE +GC HI C+CG C+ C
Sbjct: 391 IEKVDGCNHIECKCGKHICWVC 412
>Medtr2g044260.1 | zinc finger, C3HC4 type (RING finger) protein,
putative | LC | chr2:19259883-19260746 | 20130731
Length = 287
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 6/223 (2%)
Query: 279 YAFKLARDAIVSQSTRSAEAGSSTKS--LKETCVICLEDTDINQFFSVDGCQHRYCFSCV 336
+ F ++ T + E G S+ S C IC + + F + GC H YC CV
Sbjct: 49 FNFTPKNNSYTKPKTNNLEKGESSNSSITPFVCEICTDTKTMKDAFYISGCSHAYCSDCV 108
Query: 337 KQHVEVKLLHGMVP-KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYC 395
+++ KL +V +CP C L CR L ++ + EA V+ K YC
Sbjct: 109 VKYINSKLEDNIVNIQCPVLDCEGLLDPQFCRPILSDEVYDRWGLLFCEALFKVSKKFYC 168
Query: 396 PYPRCSALM--SKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKML 453
P+ CSAL+ + ++ S+ + VP + C ++ L
Sbjct: 169 PFADCSALLINDRRNPVKNSECPNCNRMFYAQCMAPQHDVCARCKVPRQQGIECSEFEKL 228
Query: 454 NPN-PPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCR 495
N + ED A + WRQC KC + +EG +TCR
Sbjct: 229 NVDRRKKEDDMFMCFAKDTEWRQCPKCRIYVAKSEGSIDMTCR 271
>Medtr3g462500.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr3:24977127-24976175 | 20130731
Length = 276
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 13/199 (6%)
Query: 298 AGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHEG 356
G S++SL C IC + + F C H +C C+ ++V ++ + +V CP
Sbjct: 54 GGESSRSL---CGICFDLKTDSDMFKRKSCNHLFCVECISKYVVSQINNNVVKVTCPTPN 110
Query: 357 CNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNL 416
C + + LP + I+ + E+ I + K YCP+ CS L+ + N
Sbjct: 111 CFVKFEPRHLKHILPREFIDRWELAVYESKIALDQKTYCPFKNCSVLL-------VNDNN 163
Query: 417 TGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDL--KLKSLATSSFWR 474
G VPWH +M+C ++ L +DL K LA W+
Sbjct: 164 RGVVLTSCECPSCHRLFCAQCKVPWHAEMNCQEFQDLKRPKKEQDLDDKFLELANRKKWQ 223
Query: 475 QCVKCNHMIELAEGCYHIT 493
+C C+ ++ ++GC ++T
Sbjct: 224 RCPNCSIYVKRSDGCVNVT 242
>Medtr3g086770.1 | helicase, IBR and zinc finger protein | HC |
chr3:39323283-39316838 | 20130731
Length = 1718
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 308 TCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLH-GMVPKC-PHEGCNNELLADS 365
+C ICL ++ + ++GC H +C C+ + E + + G P C H+GC + +L
Sbjct: 1509 SCPICL--CEVEDGYKLEGCGHLFCRLCLVEQCESAIKNQGSFPICCAHQGCGDPILLTD 1566
Query: 366 CRKFLPHKLIETMQQRKLEASIPVTDKIY--CPYPRCSALMSKTEVLEYSKNLTGSEPGX 423
R L + ++ + + L A + + Y CP P C + V + + T SEP
Sbjct: 1567 FRTLLSNDKLDELFRASLGAFVASSSGTYRFCPSPDCPS------VYRVADSDTASEP-- 1618
Query: 424 XXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFW-RQCVKCNHM 482
+ +H +SC RY+ L +P D LK + C C +
Sbjct: 1619 FVCGACYSETCTKCHLEYHPYLSCERYRELKDDP---DSSLKEWCKGKEQVKSCFACGQI 1675
Query: 483 IELAEGCYHITCRCGNEFCYQC 504
IE +GC H+ C+CG C+ C
Sbjct: 1676 IEKIDGCNHVECKCGKHVCWVC 1697
>Medtr4g063810.1 | zinc finger protein | HC | chr4:23694274-23695194
| 20130731
Length = 306
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 296 AEAGSSTKSLKET-CVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGM-VPKCP 353
E+ SS+ LK++ C IC+E + + F C H +C C+ +++ K+ + + KCP
Sbjct: 77 GESSSSSSQLKQSYCAICMEAKPVEEMFQNQKCSHSFCEDCLGRYLAAKIQESISMVKCP 136
Query: 354 HEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYS 413
CN+ L C LP + + + E + + K YCP+ CSA++ E
Sbjct: 137 DPKCNDILEPHDCSSILPKDVFDRWENALCENMVLGSQKFYCPFNDCSAMLLNDE----K 192
Query: 414 KNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPA-EDLKLKSLATSSF 472
+T SE V WH + C + L EDL LA +
Sbjct: 193 GIVTASE-----CPHCHRLFCAQCKVSWHIGVDCKEFLSLKDGERGREDLMAMELAKNKR 247
Query: 473 WRQCVKCNHMIELAEGCYHITCRCGN 498
W++C KC +E G + + G+
Sbjct: 248 WKRCPKCGFYVEKIVGLFAMLGDIGD 273
>Medtr3g462430.1 | IBR domain protein | HC | chr3:24928915-24931191
| 20130731
Length = 253
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 382 KLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPW 441
K E+ I + K YC + CS L+ + N G VPW
Sbjct: 120 KYESKIALEQKTYCAFKDCSVLL-------VNDNDKGDVLTSCECPSCHRLFCAQCKVPW 172
Query: 442 HFDMSCYRYKMLNPNPPAEDL--KLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNE 499
H +M+C ++ L + DL K LA + W++C C+ ++ + GC H+ CRC
Sbjct: 173 HAEMNCQEFQDLKRDKNEIDLDDKFLELAKINKWKRCPNCSIYVKRSSGCEHMKCRCKCN 232
Query: 500 FCYQCGAEWK 509
FCY CG +WK
Sbjct: 233 FCYLCGKKWK 242
>Medtr3g055420.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr3:21793141-21791789 | 20130731
Length = 206
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 60/213 (28%)
Query: 305 LKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP----KCPHEGCNNE 360
+K TC IC + + F C H YC C++++V ++ + +V CP C E
Sbjct: 42 MKHTCGICFDLKTNSDMFQTTKCNHFYCLDCIRKYVTFQISNYLVKVKVITCPSPNCFVE 101
Query: 361 LLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSE 420
L + LP ++ T + R L ++ K + Y++ L +
Sbjct: 102 LKPKQLQHILPKQV--TFRWRSLICESSISLKF----------------ISYARKLFQN- 142
Query: 421 PGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCN 480
+K+ D L LA WR+C KC+
Sbjct: 143 -----------------------------FKL--------DKSLVKLAKKERWRRCPKCS 165
Query: 481 HMIELAEGCYHITCRCGNEFCYQCGAEWKDKKA 513
IE +EGC ++ CRCG FCY CG + + A
Sbjct: 166 FYIERSEGCDNMLCRCGCRFCYNCGRKHANGHA 198
>Medtr3g055400.1 | IBR domain protein | LC | chr3:21788463-21787776
| 20130731
Length = 201
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 78/223 (34%), Gaps = 52/223 (23%)
Query: 294 RSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCP 353
R + + +K TC IC + + F C H YC C+ ++V ++
Sbjct: 31 RCCKQKQNCLPMKHTCDICFDLKTNSDMFQTTKCNHFYCLDCICKYVTFQI--------- 81
Query: 354 HEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYS 413
NN L+ I CP P CS +
Sbjct: 82 ----NNNLVK--------------------------VKVITCPSPNCSVKLK-------P 104
Query: 414 KNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFW 473
K L P +P F + Y K++ D+K LA W
Sbjct: 105 KQLQHILP--KQVTFRWESLIHKSSIP--FKLMSYGRKLIQN--IELDMKFLELAKRESW 158
Query: 474 RQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATCD 516
++C +C+ +E GC H+ CRCG +FCY CG+ + K CD
Sbjct: 159 KKCPRCSFYVERINGCNHMMCRCGCDFCYNCGSGLRKKMCGCD 201
>Medtr2g038640.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr2:16868181-16869732 | 20130731
Length = 336
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 105/268 (39%), Gaps = 63/268 (23%)
Query: 237 QHLSGKWPVNQQK---LARLVNEVYLLQRKFTYCNPRLVA------RHDLKYAFKLARDA 287
Q LS K N K L++ +++ Y +K T N + V R+ +K F L R
Sbjct: 84 QPLSAKGSQNTVKRNSLSQDLDDEYEENKKATTGNNKQVQIKPERNRNKIKIIFLLKR-- 141
Query: 288 IVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHG 347
++ E G S+K C IC + + FS GC H +C C+ ++V+ ++
Sbjct: 142 ---KTKTVIEQGQSSKIF---CGICFDSVTDSNMFST-GCNHPFCTKCICKYVKNQITEK 194
Query: 348 MVP-KCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSK 406
+V CP C +DKIYCPY CS LM
Sbjct: 195 VVKLNCPDPEC--------------------------------SDKIYCPYNNCSLLM-- 220
Query: 407 TEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRY-KMLNPNPPAEDLKLK 465
V + + +T E VPWH DM+C ++ K ++ N D
Sbjct: 221 --VNDAACAVTSCE-----CSSCHRLFCVQCKVPWHTDMNCRQFQKSMSEN--QLDKNFL 271
Query: 466 SLATSSFWRQCVKCNHMIELAEGCYHIT 493
LA W++C KC+ ++ GC T
Sbjct: 272 KLAKREKWQRCPKCSMHVQKTGGCVVFT 299
>Medtr3g055430.1 | IBR domain protein | LC | chr3:21796452-21793448
| 20130731
Length = 355
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 461 DLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWK 509
D K LA W++C C+ +E GC H+ CRCG++FCY+CG K
Sbjct: 254 DKKFLELAKRERWKRCPSCSIYVERINGCNHMMCRCGSDFCYKCGVTLK 302
>Medtr3g462490.1 | IBR domain protein | LC | chr3:24974219-24971700
| 20130731
Length = 427
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 31/212 (14%)
Query: 247 QQKLARLVNEVYLLQRKFTY-CNPRLVARHDLKYAFKLARDAIVSQ------STRSAEAG 299
QQ LARL + ++++ +++ +P + +Y + R ++ + ++
Sbjct: 219 QQNLARLPLQKFMMKNEYSPPMSPSVTFISANEYQNSMKRKSLSGNIEKKKKTKKAITPR 278
Query: 300 SSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNN 359
S +S K C ICL+ ++ F+ C H +C C+ ++ +V+ M
Sbjct: 279 SQAQSSKSLCGICLDSVIDSKIFATGSCNHPFCTKCISKNAKVQRKEKM----------- 327
Query: 360 ELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGS 419
+ C F K+I + E+SI KI+CPY C L+ V + + +T
Sbjct: 328 ----NICNPFYLKKVIVDWESAIYESSIAQRQKIHCPYKNCFLLL----VNDGLEGVTSC 379
Query: 420 EPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYK 451
E VPWH D +C ++
Sbjct: 380 E-----CPSCHRLFCVQCNVPWHADKNCREFQ 406