Miyakogusa Predicted Gene

Lj3g3v2309730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2309730.1 Non Characterized Hit- tr|D7G9G5|D7G9G5_ECTSI
Putative uncharacterized protein OS=Ectocarpus
silicul,50,1e-18,L28p-like,NULL; Ribosomal_L28,Ribosomal protein L28;
39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL,Riboso,CUFF.44284.1
         (190 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g007480.1 | ribosomal protein L28 | HC | chr1:390537-39403...   346   7e-96
Medtr1g007480.2 | ribosomal protein L28 | HC | chr1:390617-39403...   346   7e-96

>Medtr1g007480.1 | ribosomal protein L28 | HC | chr1:390537-394034 |
           20130731
          Length = 232

 Score =  346 bits (888), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 165/189 (87%), Positives = 179/189 (94%)

Query: 1   MAFRGKEMMKKVLKKVGEKNLTPKAKESLQKCIPKTKIVMGRAKRGLFAGRHIQFGNTVS 60
           MAFRGKEMMKKVLKKVG+KNLTP+AKES++K +PK K+VMGRAKRGLFAG+HIQFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKKVGDKNLTPRAKESIEKWLPKNKVVMGRAKRGLFAGKHIQFGNSVS 60

Query: 61  EDGGNKTRRNWKPNVQDKRLFSYILDRHIRAKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGN+TRR WKPNVQDKRLFSYILDRHIR KVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNRTRRTWKPNVQDKRLFSYILDRHIRIKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGVLWKAKIEKLYEELGKKEVVFFSPEDEANFEQSFKDLKLSEREARKEIRKIMYAGM 180
           TEIGVLWK+KIEKLYEELGKKEVVFFSPEDEA FEQ FKDL+LSEREARKE+RKIM+A M
Sbjct: 121 TEIGVLWKSKIEKLYEELGKKEVVFFSPEDEAKFEQGFKDLRLSEREARKEVRKIMHASM 180

Query: 181 GKHKLIGVD 189
            KHKLI V+
Sbjct: 181 NKHKLIEVE 189


>Medtr1g007480.2 | ribosomal protein L28 | HC | chr1:390617-394034 |
           20130731
          Length = 232

 Score =  346 bits (888), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 165/189 (87%), Positives = 179/189 (94%)

Query: 1   MAFRGKEMMKKVLKKVGEKNLTPKAKESLQKCIPKTKIVMGRAKRGLFAGRHIQFGNTVS 60
           MAFRGKEMMKKVLKKVG+KNLTP+AKES++K +PK K+VMGRAKRGLFAG+HIQFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKKVGDKNLTPRAKESIEKWLPKNKVVMGRAKRGLFAGKHIQFGNSVS 60

Query: 61  EDGGNKTRRNWKPNVQDKRLFSYILDRHIRAKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGN+TRR WKPNVQDKRLFSYILDRHIR KVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNRTRRTWKPNVQDKRLFSYILDRHIRIKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGVLWKAKIEKLYEELGKKEVVFFSPEDEANFEQSFKDLKLSEREARKEIRKIMYAGM 180
           TEIGVLWK+KIEKLYEELGKKEVVFFSPEDEA FEQ FKDL+LSEREARKE+RKIM+A M
Sbjct: 121 TEIGVLWKSKIEKLYEELGKKEVVFFSPEDEAKFEQGFKDLRLSEREARKEVRKIMHASM 180

Query: 181 GKHKLIGVD 189
            KHKLI V+
Sbjct: 181 NKHKLIEVE 189