Miyakogusa Predicted Gene

Lj3g3v2298670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2298670.1 tr|D8LRR1|D8LRR1_ECTSI Proteasome subunit beta
type OS=Ectocarpus siliculosus GN=Psb4 PE=3
SV=1,47.96,5e-19,PROTEASOME_B_2,Proteasome B-type subunit; PROTEASOME
SUBUNIT BETA TYPE 4,NULL; PROTEASOME SUBUNIT AL,CUFF.44276.1
         (97 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g060540.1 | proteasome subunit beta protein | HC | chr4:22...   201   1e-52
Medtr6g084450.1 | proteasome subunit beta protein | HC | chr6:31...   196   4e-51

>Medtr4g060540.1 | proteasome subunit beta protein | HC |
           chr4:22273335-22277926 | 20130731
          Length = 232

 Score =  201 bits (511), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 91/97 (93%), Positives = 97/97 (100%)

Query: 1   MIGVNFEDNHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQ 60
           MIG+N+ED+HIATGLGNHLARPILRDEWHENL+FEEGVKLLEKCMRVLLYRDRSAVNKIQ
Sbjct: 136 MIGINYEDDHIATGLGNHLARPILRDEWHENLSFEEGVKLLEKCMRVLLYRDRSAVNKIQ 195

Query: 61  IAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW 97
           IAKMTEEGATMFPPFSLKTYWEFSAF+NPT+GAEGSW
Sbjct: 196 IAKMTEEGATMFPPFSLKTYWEFSAFKNPTVGAEGSW 232


>Medtr6g084450.1 | proteasome subunit beta protein | HC |
           chr6:31625633-31619061 | 20130731
          Length = 232

 Score =  196 bits (498), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 88/97 (90%), Positives = 97/97 (100%)

Query: 1   MIGVNFEDNHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQ 60
           MIGVN+EDNH+ATGLGNHLARPILRDEW+ENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQ
Sbjct: 136 MIGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQ 195

Query: 61  IAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW 97
           I+K+TEEGAT++PPFSLKTYWEFSAF+NPT+GAEGSW
Sbjct: 196 ISKITEEGATVYPPFSLKTYWEFSAFKNPTVGAEGSW 232