Miyakogusa Predicted Gene

Lj3g3v2297640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2297640.1 Non Characterized Hit- tr|K0T5B2|K0T5B2_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,46.15,0.0000000004,seg,NULL,CUFF.44268.1
         (252 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g060795.1 | RNA ligase, putative | HC | chr4:22390932-2237...   270   9e-73

>Medtr4g060795.1 | RNA ligase, putative | HC |
           chr4:22390932-22371212 | 20130731
          Length = 1129

 Score =  270 bits (690), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 148/220 (67%), Positives = 163/220 (74%), Gaps = 19/220 (8%)

Query: 45  MPCNQRSGG-HGGQQWTEKPKDEAPLSSAMGDSATAAETVSNKLAGMHIGENSEQTGLGH 103
           MP NQRS G HG Q+W EKPK E P  SA+GD    AETV+NKL+ +HIGENS QT + +
Sbjct: 1   MPRNQRSSGLHGEQRWKEKPKTE-PQVSAIGD----AETVTNKLSALHIGENSAQTKVQN 55

Query: 104 ANK-------GAIWKHKSYGTTA----APEVDNKPAGKVAVDGARVDAGGVASTQKSGIS 152
            NK        AIWK KSYGT +      EV++ P  K  VDG  +    VASTQK    
Sbjct: 56  VNKVVNSQGSTAIWKPKSYGTVSGGANVTEVESTPVSKAKVDG--LGGVAVASTQKISSG 113

Query: 153 GAGLSKLFQGNLLEKFEVDNSTYSQAHIRATFYPKFENEKSDQETRTRMIEMVSKGLATL 212
              LSKLF GNLLE F VD+STY+QA IRATFYPKFENEKSDQETR+RMIE+VSKGL TL
Sbjct: 114 SVALSKLFSGNLLENFTVDSSTYAQARIRATFYPKFENEKSDQETRSRMIELVSKGLLTL 173

Query: 213 EVSLKHSGSLFMYAGHEGGAYAKNSFGNIYTAVGVFVLGR 252
           EVSLKHSGSLFMYAGHEGGAYAKNSFGNIYTAVGVFVLGR
Sbjct: 174 EVSLKHSGSLFMYAGHEGGAYAKNSFGNIYTAVGVFVLGR 213