Miyakogusa Predicted Gene

Lj3g3v2296580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2296580.1 Non Characterized Hit- tr|G7II42|G7II42_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,37.42,8e-19,seg,NULL,
gene.Ljchr3_pseudomol_20120830.path1.gene4971.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g012450.1 | late embryogenesis abundant (LEA) hydroxyproli...   132   2e-31
Medtr2g102080.1 | late embryogenesis abundant protein | HC | chr...    88   4e-18
Medtr6g086455.1 | late embryogenesis abundant protein | HC | chr...    51   5e-07

>Medtr4g012450.1 | late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family protein,
           putative | HC | chr4:3300288-3298783 | 20130731
          Length = 197

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 78/107 (72%)

Query: 19  ADVWISVAVRVQNRDVYWMDLEEVDVGVKYRGKKLGHVESKRWHVRRWGTIHAFGELESS 78
            DV +SV V++ N+ +YWM+L EVDVG+KYRG KLGHVE++ WHV+ WG+ H FGELE  
Sbjct: 64  VDVSLSVTVKIHNKVLYWMELAEVDVGIKYRGHKLGHVETRGWHVKGWGSEHVFGELEFG 123

Query: 79  ALPSADVAHLLQDLSKGKVFFHTVTEVTGYVGFLSFPLPIEFKLKHS 125
            LPS DVAHL+QDL+K +V FHT   V G +G  +F  P  FK+K S
Sbjct: 124 GLPSPDVAHLMQDLAKKRVHFHTAVGVVGNLGLFAFHFPKIFKVKLS 170


>Medtr2g102080.1 | late embryogenesis abundant protein | HC |
           chr2:43926025-43927347 | 20130731
          Length = 200

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 8/138 (5%)

Query: 20  DVWISVAVRVQNRDVYWMDLEEVDVGVKYRGKKLGHVESKRWHVRRWGTIHAFGELESSA 79
           D+ +   +RVQN DVY MD   VDV V YRGK LGHV SK  HVR  G+     + E S 
Sbjct: 32  DISMLFTLRVQNVDVYSMDFGAVDVAVSYRGKPLGHVTSKNGHVRAMGSSFVDADAEFSG 91

Query: 80  LPS-ADVAHLLQDLSKGKVFFHTVTEVTGYVGFLSFPLPIEFKLKHSEALTDKLHKLFL- 137
           +    ++  LL+DL+KG V F TV++V G +G L F  PI+ KL     L   +++  + 
Sbjct: 92  IGVLPEIVLLLEDLAKGMVPFDTVSQVRGKMGILFFYFPIKAKLS-CAVLVSTINQTIIR 150

Query: 138 -NFLFRFFVIDQPEPRGW 154
            + L+      QP P  W
Sbjct: 151 QHCLYE----GQPPPLAW 164


>Medtr6g086455.1 | late embryogenesis abundant protein | HC |
           chr6:32516778-32512401 | 20130731
          Length = 262

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 20  DVWISVAVRVQNRDVYWMDLEEVDVGVKYRGKKLGHVES-KRWHVRRWGTIHAFGELESS 78
           D+  S+ ++++NRD + +  +++DV + YRG+++G V S     +R  G+ +    L   
Sbjct: 109 DLSFSLKLKIRNRDFFSVAYDKLDVSLGYRGREIGTVSSVGGGKIRARGSDYVDVVLSID 168

Query: 79  ALPSA-DVAHLLQDLSKGKVFFHTVTEVTGYVGFL 112
           A     D  +L++D+ KG + F TV++V G +GF+
Sbjct: 169 AFEVIYDAFYLIEDMVKGVIVFDTVSKVDGKLGFI 203