Miyakogusa Predicted Gene

Lj3g3v2286550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2286550.1 tr|B9GFP4|B9GFP4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_548840 PE=4 SV=1,76.21,0,no
description,Aldolase-type TIM barrel; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; PDXS_SNZ_2,gene.g48722.t1.1
         (230 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g012860.1 | pyridoxal biosynthesis protein PDX1, putative ...   350   7e-97
Medtr2g017520.1 | pyridoxal biosynthesis protein PDX1, putative ...   319   1e-87

>Medtr4g012860.1 | pyridoxal biosynthesis protein PDX1, putative |
           HC | chr4:3449648-3448347 | 20130731
          Length = 295

 Score =  350 bits (897), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 165/214 (77%), Positives = 190/214 (88%)

Query: 1   MTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEILSPADDHNHINKHS 60
           MTDPSLIK IKR+VSIP++S  R+GHFVEAQILE+TGVDYIDE+E L+ ADD NHINKH+
Sbjct: 67  MTDPSLIKSIKRSVSIPVISPVRIGHFVEAQILEATGVDYIDENESLTIADDQNHINKHN 126

Query: 61  FRCPFVCGARSLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNVRSVMGELRALSNMDE 120
           FR PF+  A +LGEAL RIREGAAM+RIQG++  SGNIA+TV +VR +M ELR LSNMD+
Sbjct: 127 FRTPFISSASNLGEALCRIREGAAMIRIQGEVKNSGNIAKTVMHVRCLMKELRVLSNMDD 186

Query: 121 DEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFVGSEVF 180
           DEVF F+K+I+APYD+VAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFVG+EVF
Sbjct: 187 DEVFTFSKRIQAPYDIVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFVGAEVF 246

Query: 181 NCEDPFKRVRGIIQAVRNYNDPHVLVESMANLNL 214
             ED FKRV+GI+QAVRNYNDP+VLVE M  LNL
Sbjct: 247 GYEDCFKRVKGIVQAVRNYNDPNVLVEIMMGLNL 280


>Medtr2g017520.1 | pyridoxal biosynthesis protein PDX1, putative |
           HC | chr2:5363983-5365478 | 20130731
          Length = 314

 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/227 (66%), Positives = 185/227 (81%), Gaps = 8/227 (3%)

Query: 1   MTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEILSPADDHNHINKHS 60
           M+DP LIK+IK  V+IP++++AR+GHFVEAQILES G+DY+DESE+L+ AD+ NHINKH+
Sbjct: 82  MSDPQLIKEIKAAVTIPVMAKARIGHFVEAQILESLGIDYVDESEVLTLADEDNHINKHN 141

Query: 61  FRCPFVCGARSLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNVRSVMGELRALSNMDE 120
           FR PFVCG R+LGEALRRIREGAAM+R +G+ +G+GNI E V++VRSV+G++R L NMDE
Sbjct: 142 FRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVLGDIRVLRNMDE 200

Query: 121 DEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFVGSEVF 180
           DEVF FAKKI APYDLV QTKQ+GRLPVV FAAGG+ TPADAALMMQLGC GVFVGS VF
Sbjct: 201 DEVFTFAKKIGAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVF 260

Query: 181 NCEDPFKRVRGIIQAVRNYNDPHVLV-------ESMANLNLGDDMIE 220
              DP KR R I+QAV +Y+DP +L        E+M  LNL D  +E
Sbjct: 261 KSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGLNLTDHNVE 307