Miyakogusa Predicted Gene

Lj3g3v2284470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2284470.1 tr|B9GFP4|B9GFP4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_548840 PE=4
SV=1,73.99,0,SOR_SNZ,Vitamin B6 biosynthesis protein; no
description,Aldolase-type TIM barrel; SUBFAMILY NOT NAME,CUFF.43865.1
         (302 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g012860.1 | pyridoxal biosynthesis protein PDX1, putative ...   434   e-122
Medtr2g017520.1 | pyridoxal biosynthesis protein PDX1, putative ...   364   e-101

>Medtr4g012860.1 | pyridoxal biosynthesis protein PDX1, putative |
           HC | chr4:3449648-3448347 | 20130731
          Length = 295

 Score =  434 bits (1116), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/279 (75%), Positives = 237/279 (84%), Gaps = 6/279 (2%)

Query: 9   VTLYNTTVIT-DPKQNPYSFKLGAVQTLRGGAILQVSTPHQAKIAEQAGACAITVSDPLR 67
           VT+YNTT IT DP Q PYSFKL   QTLRGGAI QV+  HQAKIAEQAGACA+TVSD   
Sbjct: 7   VTVYNTTAITTDPLQTPYSFKLSLTQTLRGGAIFQVTNLHQAKIAEQAGACAVTVSDQ-- 64

Query: 68  PAISRMTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEILSPADDHNH 127
               RMTDPSLIK IKR+VSIP++S  R+GHFVEAQILE+TGVDYIDE+E L+ ADD NH
Sbjct: 65  ---QRMTDPSLIKSIKRSVSIPVISPVRIGHFVEAQILEATGVDYIDENESLTIADDQNH 121

Query: 128 INKHNFRCPFVCGARTLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNVRSVMGELRAL 187
           INKHNFR PF+  A  LGEAL RIREGAAM+RIQG++  SGNIA+TV +VR +M ELR L
Sbjct: 122 INKHNFRTPFISSASNLGEALCRIREGAAMIRIQGEVKNSGNIAKTVMHVRCLMKELRVL 181

Query: 188 SNMDEDEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFV 247
           SNMD+DEVF F+K+I+APYD+VAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFV
Sbjct: 182 SNMDDDEVFTFSKRIQAPYDIVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFV 241

Query: 248 GSEVFNCEDPFKRVRGIIQAVRNYNDPHVLVESMANLNL 286
           G+EVF  ED FKRV+GI+QAVRNYNDP+VLVE M  LNL
Sbjct: 242 GAEVFGYEDCFKRVKGIVQAVRNYNDPNVLVEIMMGLNL 280


>Medtr2g017520.1 | pyridoxal biosynthesis protein PDX1, putative |
           HC | chr2:5363983-5365478 | 20130731
          Length = 314

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/307 (58%), Positives = 226/307 (73%), Gaps = 19/307 (6%)

Query: 4   EDGGAVTLYNTTVITDPKQN-----PYSFKLGAVQTLRGGAILQVSTPHQAKIAEQAGAC 58
           E  G VT+Y    +T+         P+S K+G  Q LRGG I+ V    QA+IAE+AGAC
Sbjct: 2   EGSGVVTVYGNGALTETTSTTTKSSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGAC 61

Query: 59  AITVSDPL------RPAISRMTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDY 112
           A+   + +      +  ++RM+DP LIK+IK  V+IP++++AR+GHFVEAQILES G+DY
Sbjct: 62  AVMALERVPADIRAQGGVARMSDPQLIKEIKAAVTIPVMAKARIGHFVEAQILESLGIDY 121

Query: 113 IDESEILSPADDHNHINKHNFRCPFVCGARTLGEALRRIREGAAMVRIQGDLSGSGNIAE 172
           +DESE+L+ AD+ NHINKHNFR PFVCG R LGEALRRIREGAAM+R +G+ +G+GNI E
Sbjct: 122 VDESEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIE 180

Query: 173 TVKNVRSVMGELRALSNMDEDEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPA 232
            V++VRSV+G++R L NMDEDEVF FAKKI APYDLV QTKQ+GRLPVV FAAGG+ TPA
Sbjct: 181 AVRHVRSVLGDIRVLRNMDEDEVFTFAKKIGAPYDLVMQTKQLGRLPVVQFAAGGVATPA 240

Query: 233 DAALMMQLGCHGVFVGSEVFNCEDPFKRVRGIIQAVRNYNDPHVLV-------ESMANLN 285
           DAALMMQLGC GVFVGS VF   DP KR R I+QAV +Y+DP +L        E+M  LN
Sbjct: 241 DAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGLN 300

Query: 286 LGDDMIE 292
           L D  +E
Sbjct: 301 LTDHNVE 307