Miyakogusa Predicted Gene

Lj3g3v2248290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2248290.2 Non Characterized Hit- tr|K4DF87|K4DF87_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,53.92,3e-19,seg,NULL,CUFF.43750.2
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011920.1 | CASC3/barentsz eIF4AIII-binding protein | HC |...   122   7e-29

>Medtr4g011920.1 | CASC3/barentsz eIF4AIII-binding protein | HC |
           chr4:3118579-3114309 | 20130731
          Length = 748

 Score =  122 bits (306), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 72/96 (75%), Gaps = 8/96 (8%)

Query: 1   MAFPGYVA----GSGKSEMTWLPVXXXXXXXXXXSY--PYLAVDGAYTRQSGPTSAMGNS 54
           MAFPGYVA    G GKSEMTWLPV           Y  PYLAVDGAY RQ G TSA+ NS
Sbjct: 588 MAFPGYVANPQLGLGKSEMTWLPVLAGAAGALGAQYCSPYLAVDGAYGRQPGQTSAIDNS 647

Query: 55  SKEHNDVNKANNELKPPQKSELVSDEYGQRQNKPRR 90
           SKE  +VNKANNELKPPQK+ELV+DEYGQRQNKPRR
Sbjct: 648 SKE--NVNKANNELKPPQKTELVNDEYGQRQNKPRR 681