Miyakogusa Predicted Gene

Lj3g3v2246970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2246970.1 tr|D7M9Q0|D7M9Q0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,65.52,0.000000000000001,RRM_3,RNA-binding motif; RNA-BINDING
PROTEIN-RELATED,NULL; LUPUS LA PROTEIN-RELATED,NULL; no
descrip,NODE_105060_length_252_cov_24.654762.path3.1
         (63 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g026890.1 | RNA recognition motif protein | HC | chr1:8835...    76   8e-15

>Medtr1g026890.1 | RNA recognition motif protein | HC |
           chr1:8835899-8830191 | 20130731
          Length = 482

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 48/56 (85%)

Query: 5   IDFTMRAESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPVTGEAEKEYC 60
           IDF M  ESGFIRF+E EAAQK+RAAA LS+ GGLVVKNYIA LDPVTGEAEK+Y 
Sbjct: 378 IDFNMGDESGFIRFDEPEAAQKARAAAALSEKGGLVVKNYIATLDPVTGEAEKQYW 433