Miyakogusa Predicted Gene

Lj3g3v2235780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2235780.1 Non Characterized Hit- tr|I1KVB3|I1KVB3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,83.93,0,CRYPTOCHROME,NULL; seg,NULL; Cryptochrome/photolyase,
N-terminal domain,DNA photolyase, N-terminal; ,CUFF.43695.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...   352   2e-97
Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...   352   2e-97
Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...   352   3e-97
Medtr1g088420.1 | photolyase/blue-light receptor PHR2 | HC | chr...    66   4e-11
Medtr1g043190.1 | cryptochrome 2B apoprotein | HC | chr1:1616919...    62   6e-10
Medtr1g076190.1 | cryptochrome 2B apoprotein | HC | chr1:3375693...    59   4e-09
Medtr1g076190.2 | cryptochrome 2B apoprotein | HC | chr1:3375693...    59   4e-09
Medtr5g063920.2 | cryptochrome protein | HC | chr5:26511516-2651...    55   8e-08
Medtr5g063920.1 | cryptochrome protein | HC | chr5:26511516-2651...    55   8e-08
Medtr5g063920.4 | cryptochrome protein | HC | chr5:26511516-2651...    55   8e-08

>Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 518

 Score =  352 bits (904), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 198/249 (79%), Gaps = 8/249 (3%)

Query: 1   MRLFPPRASSIMTTPTASGSGSVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMK 60
           MRL    +SS MT     GSGS++WFRKG+RIHDNPALE+A+RG SNLYP+FVIDPHYMK
Sbjct: 1   MRL---TSSSSMTL----GSGSMIWFRKGIRIHDNPALEYATRGCSNLYPLFVIDPHYMK 53

Query: 61  PDPYASSPGSSRAGLNRINFXXXXXXXXXXXXKKLGSRLLILKGDPAEVLIQCLKQWNVK 120
           PDP A SPGSSRAGLNRI+F            KK+GSRLL+LKGDP+EVLI+CLKQWN+ 
Sbjct: 54  PDPNAFSPGSSRAGLNRISFLLESLGDLDVNLKKIGSRLLVLKGDPSEVLIRCLKQWNIG 113

Query: 121 KLCFEYDTEPYYQALDIKVKSFAVAAGIEVFSPVSHTLFNPMDIIQKNGGKPPLSYQSFV 180
           KLCFEYDT+PYYQALDIKVK +A+ AGIEVFSPVSHTLFNP DIIQKNGGKPPLSYQSFV
Sbjct: 114 KLCFEYDTDPYYQALDIKVKDYALKAGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFV 173

Query: 181 KLAGDXXXXXXXXXXXXXXVGHLGGCDIFEVPTVEDLGYEDAKQDEFSPFKGGESEALKR 240
            LAG+              VG LG CDI EVPT++DLGYED  Q EFSPFKGGESEAL+R
Sbjct: 174 NLAGEPPSPLATKYSSLPPVGPLGSCDISEVPTIKDLGYED-DQLEFSPFKGGESEALRR 232

Query: 241 LEECMKDKV 249
           LEECMKDK 
Sbjct: 233 LEECMKDKT 241


>Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 542

 Score =  352 bits (903), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 198/249 (79%), Gaps = 8/249 (3%)

Query: 1   MRLFPPRASSIMTTPTASGSGSVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMK 60
           MRL    +SS MT     GSGS++WFRKG+RIHDNPALE+A+RG SNLYP+FVIDPHYMK
Sbjct: 1   MRL---TSSSSMTL----GSGSMIWFRKGIRIHDNPALEYATRGCSNLYPLFVIDPHYMK 53

Query: 61  PDPYASSPGSSRAGLNRINFXXXXXXXXXXXXKKLGSRLLILKGDPAEVLIQCLKQWNVK 120
           PDP A SPGSSRAGLNRI+F            KK+GSRLL+LKGDP+EVLI+CLKQWN+ 
Sbjct: 54  PDPNAFSPGSSRAGLNRISFLLESLGDLDVNLKKIGSRLLVLKGDPSEVLIRCLKQWNIG 113

Query: 121 KLCFEYDTEPYYQALDIKVKSFAVAAGIEVFSPVSHTLFNPMDIIQKNGGKPPLSYQSFV 180
           KLCFEYDT+PYYQALDIKVK +A+ AGIEVFSPVSHTLFNP DIIQKNGGKPPLSYQSFV
Sbjct: 114 KLCFEYDTDPYYQALDIKVKDYALKAGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFV 173

Query: 181 KLAGDXXXXXXXXXXXXXXVGHLGGCDIFEVPTVEDLGYEDAKQDEFSPFKGGESEALKR 240
            LAG+              VG LG CDI EVPT++DLGYED  Q EFSPFKGGESEAL+R
Sbjct: 174 NLAGEPPSPLATKYSSLPPVGPLGSCDISEVPTIKDLGYED-DQLEFSPFKGGESEALRR 232

Query: 241 LEECMKDKV 249
           LEECMKDK 
Sbjct: 233 LEECMKDKT 241


>Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 491

 Score =  352 bits (902), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 198/249 (79%), Gaps = 8/249 (3%)

Query: 1   MRLFPPRASSIMTTPTASGSGSVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMK 60
           MRL    +SS MT     GSGS++WFRKG+RIHDNPALE+A+RG SNLYP+FVIDPHYMK
Sbjct: 1   MRL---TSSSSMTL----GSGSMIWFRKGIRIHDNPALEYATRGCSNLYPLFVIDPHYMK 53

Query: 61  PDPYASSPGSSRAGLNRINFXXXXXXXXXXXXKKLGSRLLILKGDPAEVLIQCLKQWNVK 120
           PDP A SPGSSRAGLNRI+F            KK+GSRLL+LKGDP+EVLI+CLKQWN+ 
Sbjct: 54  PDPNAFSPGSSRAGLNRISFLLESLGDLDVNLKKIGSRLLVLKGDPSEVLIRCLKQWNIG 113

Query: 121 KLCFEYDTEPYYQALDIKVKSFAVAAGIEVFSPVSHTLFNPMDIIQKNGGKPPLSYQSFV 180
           KLCFEYDT+PYYQALDIKVK +A+ AGIEVFSPVSHTLFNP DIIQKNGGKPPLSYQSFV
Sbjct: 114 KLCFEYDTDPYYQALDIKVKDYALKAGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFV 173

Query: 181 KLAGDXXXXXXXXXXXXXXVGHLGGCDIFEVPTVEDLGYEDAKQDEFSPFKGGESEALKR 240
            LAG+              VG LG CDI EVPT++DLGYED  Q EFSPFKGGESEAL+R
Sbjct: 174 NLAGEPPSPLATKYSSLPPVGPLGSCDISEVPTIKDLGYED-DQLEFSPFKGGESEALRR 232

Query: 241 LEECMKDKV 249
           LEECMKDK 
Sbjct: 233 LEECMKDKT 241


>Medtr1g088420.1 | photolyase/blue-light receptor PHR2 | HC |
           chr1:39533075-39538236 | 20130731
          Length = 456

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 25/235 (10%)

Query: 22  SVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAGLNRINFX 81
           ++VWFR  LR+HDN AL  A+  + ++ PV+  DP     D   SS G  + G  R +F 
Sbjct: 120 AIVWFRNDLRVHDNEALNTANNESISVLPVYCFDP----ADYGKSSSGFDKTGPYRASFL 175

Query: 82  XXXXXXXXXXXKKLGSRLLILKGDPAEVLIQCLKQWNVKKLCFEYDTEPYYQALDIKVKS 141
                      K  GS L++  G P  VL++  K+     +    +       ++ K++ 
Sbjct: 176 IESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEG 235

Query: 142 FAVAAGIEVFSPVSHTLFNPMDIIQKNGGKP------PLSYQSFV-KLAGDXXXXXXXXX 194
                 +EV      TL++  D+       P      P +Y  F  ++            
Sbjct: 236 KMKEENVEVKYFWGSTLYHVEDL-------PFGLEDMPSNYGGFRDRVQKLEIRKTIEAL 288

Query: 195 XXXXXVGHLGGCDIFEVPTVEDLGY-------EDAKQDEFSPFKGGESEALKRLE 242
                +   G   + ++PT+ DLG        +D KQ   S   GGE+EAL+RL+
Sbjct: 289 DQLKGLPSRGDVQLGDIPTLMDLGLNPSATMSQDGKQVPNSSMTGGETEALQRLK 343


>Medtr1g043190.1 | cryptochrome 2B apoprotein | HC |
           chr1:16169199-16173365 | 20130731
          Length = 600

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 22  SVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAGLNRINFX 81
           ++VWFR+ LRI DNPAL  A+R  S ++PVF+  P            G    G     + 
Sbjct: 4   TIVWFRRDLRIEDNPALAAAARDGS-VFPVFICCP---------KEEGQFYPGRVSRWWL 53

Query: 82  XXXXXXXXXXXKKLGSRLLILKGDPA-EVLIQCLKQWNVKKLCFEYDTEPYYQALDIKVK 140
                      K LG+ L+++K D   + L++C+     KK+ F +  +P     D  +K
Sbjct: 54  KQSLYHLDQSLKSLGAGLVMIKTDSTLKALLECVNAVQAKKVVFNHLYDPVSLVRDHNIK 113

Query: 141 SFAVAAGIEVFSPVSHTLFNPMDIIQKNG 169
              V  GI V S     L  P DI  ++G
Sbjct: 114 EKLVELGISVQSYNGDLLHEPWDIYDESG 142


>Medtr1g076190.1 | cryptochrome 2B apoprotein | HC |
           chr1:33756938-33760848 | 20130731
          Length = 630

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 22  SVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAGLNRINFX 81
           ++VWFR+ LRI DNPAL  A+R  S ++PVF+  P            G    G     + 
Sbjct: 6   TIVWFRRDLRIEDNPALAAAARDGS-VFPVFIWCP---------KEEGQFYPGRVSRWWL 55

Query: 82  XXXXXXXXXXXKKLGSRLLILKGDPA-EVLIQCLKQWNVKKLCFEYDTEPYYQALDIKVK 140
                      K LGSRL++++ +     L+ C+      K+ F +  +P     D  +K
Sbjct: 56  KQSLVHLDQSLKSLGSRLVLIRTESTLNALLDCINAIQATKVVFNHLYDPVSLVRDHNIK 115

Query: 141 SFAVAAGIEVFSPVSHTLFNPMDIIQKNG 169
              V  G+ V S     L+ P ++  + G
Sbjct: 116 EKLVELGLSVKSYNGDLLYEPWEVYDEKG 144


>Medtr1g076190.2 | cryptochrome 2B apoprotein | HC |
           chr1:33756938-33760551 | 20130731
          Length = 639

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 22  SVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAGLNRINFX 81
           ++VWFR+ LRI DNPAL  A+R  S ++PVF+  P            G    G     + 
Sbjct: 6   TIVWFRRDLRIEDNPALAAAARDGS-VFPVFIWCP---------KEEGQFYPGRVSRWWL 55

Query: 82  XXXXXXXXXXXKKLGSRLLILKGDPA-EVLIQCLKQWNVKKLCFEYDTEPYYQALDIKVK 140
                      K LGSRL++++ +     L+ C+      K+ F +  +P     D  +K
Sbjct: 56  KQSLVHLDQSLKSLGSRLVLIRTESTLNALLDCINAIQATKVVFNHLYDPVSLVRDHNIK 115

Query: 141 SFAVAAGIEVFSPVSHTLFNPMDIIQKNG 169
              V  G+ V S     L+ P ++  + G
Sbjct: 116 EKLVELGLSVKSYNGDLLYEPWEVYDEKG 144


>Medtr5g063920.2 | cryptochrome protein | HC |
           chr5:26511516-26517722 | 20130731
          Length = 679

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 16  TASGSG-SVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAG 74
           ++SG G S+VWFR+ LR+ DNPAL    R A  +  VF+  P            G    G
Sbjct: 2   SSSGGGCSIVWFRRDLRVEDNPALAAGVR-AGAVVGVFIWAPE---------EEGQYYPG 51

Query: 75  LNRINFXXXXXXXXXXXXKKLGSRLLILKG-DPAEVLIQCLKQWNVKKLCFEYDTEPYYQ 133
                +            + LG+ L+  +  D    L++ +K     ++ F +  +P   
Sbjct: 52  RVSRWWLKNSLAHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSL 111

Query: 134 ALDIKVKSFAVAAGIEVFSPVSHTLFNPMDIIQKNGGKPPLSYQSF 179
             D + K    A GI V S  S  L+ P D+  +N G+P  ++ SF
Sbjct: 112 VRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDEN-GQPFTTFDSF 156


>Medtr5g063920.1 | cryptochrome protein | HC |
           chr5:26511516-26517722 | 20130731
          Length = 679

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 16  TASGSG-SVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAG 74
           ++SG G S+VWFR+ LR+ DNPAL    R A  +  VF+  P            G    G
Sbjct: 2   SSSGGGCSIVWFRRDLRVEDNPALAAGVR-AGAVVGVFIWAPE---------EEGQYYPG 51

Query: 75  LNRINFXXXXXXXXXXXXKKLGSRLLILKG-DPAEVLIQCLKQWNVKKLCFEYDTEPYYQ 133
                +            + LG+ L+  +  D    L++ +K     ++ F +  +P   
Sbjct: 52  RVSRWWLKNSLAHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSL 111

Query: 134 ALDIKVKSFAVAAGIEVFSPVSHTLFNPMDIIQKNGGKPPLSYQSF 179
             D + K    A GI V S  S  L+ P D+  +N G+P  ++ SF
Sbjct: 112 VRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDEN-GQPFTTFDSF 156


>Medtr5g063920.4 | cryptochrome protein | HC |
           chr5:26511516-26517722 | 20130731
          Length = 679

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 16  TASGSG-SVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAG 74
           ++SG G S+VWFR+ LR+ DNPAL    R A  +  VF+  P            G    G
Sbjct: 2   SSSGGGCSIVWFRRDLRVEDNPALAAGVR-AGAVVGVFIWAPE---------EEGQYYPG 51

Query: 75  LNRINFXXXXXXXXXXXXKKLGSRLLILKG-DPAEVLIQCLKQWNVKKLCFEYDTEPYYQ 133
                +            + LG+ L+  +  D    L++ +K     ++ F +  +P   
Sbjct: 52  RVSRWWLKNSLAHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSL 111

Query: 134 ALDIKVKSFAVAAGIEVFSPVSHTLFNPMDIIQKNGGKPPLSYQSF 179
             D + K    A GI V S  S  L+ P D+  +N G+P  ++ SF
Sbjct: 112 VRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDEN-GQPFTTFDSF 156