Miyakogusa Predicted Gene

Lj3g3v2235770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2235770.1 Non Characterized Hit- tr|K3XTZ7|K3XTZ7_SETIT
Uncharacterized protein OS=Setaria italica GN=Si005404,75.93,7e-19,no
description,Cytochrome c oxidase, subunit Vb;
Q8LBW7_ARATH_Q8LBW7;,Cytochrome c oxidase, subunit ,CUFF.43703.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011340.1 | cytochrome C oxidase subunit 5b | HC | chr4:27...   210   5e-55
Medtr2g103150.1 | cytochrome C oxidase subunit 5b | HC | chr2:44...   206   8e-54

>Medtr4g011340.1 | cytochrome C oxidase subunit 5b | HC |
           chr4:2734111-2728956 | 20130731
          Length = 156

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 114/140 (81%), Gaps = 2/140 (1%)

Query: 1   MWRRLL-SSHLKTLATC-SPQSVSTVAALNCSSVSLLRHFSDTTSIKKKVEDVMPIATGH 58
           M RRLL SS LKTL +  SP S   V+ L+    S       TT IKKKVEDV+PIATGH
Sbjct: 1   MLRRLLISSQLKTLTSRRSPSSAVAVSLLSRHHFSTQSSDDSTTGIKKKVEDVVPIATGH 60

Query: 59  EREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL 118
           EREE+QA LEGRDILEI+HP GPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL
Sbjct: 61  EREEIQAQLEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL 120

Query: 119 EKGKPHECPVCAQYFVLEVV 138
           EK KPHECPVCAQYFVLEVV
Sbjct: 121 EKDKPHECPVCAQYFVLEVV 140


>Medtr2g103150.1 | cytochrome C oxidase subunit 5b | HC |
           chr2:44414137-44418994 | 20130731
          Length = 150

 Score =  206 bits (524), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 116/140 (82%), Gaps = 2/140 (1%)

Query: 1   MWRRLLSS-HLKTLATCS-PQSVSTVAALNCSSVSLLRHFSDTTSIKKKVEDVMPIATGH 58
           MWRR++SS HLKTLA+ S     S VA L  + +S         S+KK VEDV+PIATGH
Sbjct: 1   MWRRIVSSPHLKTLASSSHSHPRSAVAGLRFAGLSRHVATQSAGSVKKTVEDVVPIATGH 60

Query: 59  EREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL 118
           EREE+QA+LEGR+ILEI+HP GPFGTKEAPAVVKSYY++RIVGCPGGEGEDEHDVVWFWL
Sbjct: 61  EREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYNRRIVGCPGGEGEDEHDVVWFWL 120

Query: 119 EKGKPHECPVCAQYFVLEVV 138
           E+GKPHECPVCAQYF LEVV
Sbjct: 121 EEGKPHECPVCAQYFQLEVV 140