Miyakogusa Predicted Gene

Lj3g3v2224720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2224720.1 tr|I0Z1Q0|I0Z1Q0_9CHLO tRNA-guanine
transglycosylase OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,38.99,6e-19,ZF_RANBP2_2,Zinc finger, RanBP2-type;
ZF_RANBP2_1,Zinc finger, RanBP2-type; ZINC FINGER
PROTEIN,NULL,CUFF.43714.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC ...   174   3e-44
Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC ...   143   6e-35
Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC ...   111   2e-25
Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC ...   108   2e-24
Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC ...   102   1e-22

>Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC |
           chr4:2646573-2643799 | 20130731
          Length = 147

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/150 (63%), Positives = 99/150 (66%), Gaps = 5/150 (3%)

Query: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPG 60
           MSRPGDWNCRSCQH+NFQRR+SCQRCGDSKY                         VR G
Sbjct: 1   MSRPGDWNCRSCQHMNFQRRESCQRCGDSKYGERVDYGSVFGGIRGGSSFGLSGSDVRLG 60

Query: 61  DWYCAAANCGAHNFASRSSCFKCGAFKDDLVGGF--SSDILRSRXXXXXXXXXXXXXXXX 118
           DWYC A NCGAHNFASR SCFKCGAFKDDL GG   +SDIL SR                
Sbjct: 61  DWYCGAGNCGAHNFASRLSCFKCGAFKDDLAGGGYNNSDILLSR---GFGGSTRPGWKSG 117

Query: 119 DWICSRSGCNEHNFASRMECFKCSAPRDTY 148
           DWIC+R GCNEHNFASRMECFKCSAPRDTY
Sbjct: 118 DWICNRLGCNEHNFASRMECFKCSAPRDTY 147


>Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49624495 | 20130731
          Length = 170

 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 94/163 (57%), Gaps = 18/163 (11%)

Query: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXX-----XXXXXXXXXXXXXXXXXXXXX 55
           MSRPGDWNCR+C HLNFQRR+SCQRCG+S+                              
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGP 60

Query: 56  XVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLVGGFSSD------ILRSRXXXXXXX 109
            VRPGDWYC   NCGAHNFASRSSCFKCGA KD  +  FSSD      +LRS        
Sbjct: 61  DVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKD--IDTFSSDSSDMPRLLRSPYGFGAGS 118

Query: 110 XXXXXXX-----XXDWICSRSGCNEHNFASRMECFKCSAPRDT 147
                         DWIC+RSGCNEHNFA+RMEC++C+ PRD+
Sbjct: 119 AGGGASTRPGWKSGDWICTRSGCNEHNFANRMECYRCNGPRDS 161


>Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC |
           chr4:46857090-46858933 | 20130731
          Length = 140

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 12/142 (8%)

Query: 5   GDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPGDWYC 64
           GDW C +C+H+NF++R++CQ CG  KY                            GDW+C
Sbjct: 6   GDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYNRTE-----------TLAGDWFC 54

Query: 65  AAANCGAHNFASRSSCFKCGAFKDDLVGGFSSDILRSRXXXXXXXXXXXXXXXXDWICSR 124
            + NCGAHN+ASRS+C++CGAFKD    G+  +++ S                 DWIC R
Sbjct: 55  TSMNCGAHNYASRSNCYRCGAFKDPYSSGYGGNMVGS-GGYGSDCSSPPGWKSGDWICPR 113

Query: 125 SGCNEHNFASRMECFKCSAPRD 146
            GC  HN+ASR EC+KC  PRD
Sbjct: 114 IGCGIHNYASRTECYKCKMPRD 135


>Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49625045 | 20130731
          Length = 175

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 83/166 (50%), Gaps = 20/166 (12%)

Query: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXX-----XXXXXXXXXXXXXXXXXXXXX 55
           MSRPGDWNCR+C HLNFQRR+SCQRCG+S+                              
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGP 60

Query: 56  XVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLVGGFSSD------ILRSRXXXXXXX 109
            VRPGDWYC   NCGAHNFASRSSCFKCGA KD  +  FSSD      +LRS        
Sbjct: 61  DVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKD--IDTFSSDSSDMPRLLRSPYGFGAGS 118

Query: 110 XXXXXXX-----XXDWICSRSGCNEHNFASRMECFKCS-APRDTYQ 149
                         DWIC+R   N H F   ++    S   RDT++
Sbjct: 119 AGGGASTRPGWKSGDWICTRFHVN-HFFHYTLQFLLISYILRDTFK 163


>Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC |
           chr2:23383920-23382437 | 20130731
          Length = 128

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 71/141 (50%), Gaps = 24/141 (17%)

Query: 5   GDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPGDWYC 64
           GDW C +CQH+NF++RD+CQ CG  K                             GDWYC
Sbjct: 6   GDWMCNACQHINFKKRDACQNCGYPK-----------IGGPDPETYRYNWTETLAGDWYC 54

Query: 65  AAANCGAHNFASRSSCFKCGAFKDDLVGGFSSDILRSRXXXXXXXXXXXXXXXXDWICSR 124
           +  NCGAHN+ASR+SC++CGA K+D   G   +                     DWIC+R
Sbjct: 55  SGMNCGAHNYASRTSCYRCGALKNDNSYGSDCNYPPG-------------WKTGDWICTR 101

Query: 125 SGCNEHNFASRMECFKCSAPR 145
            GC  HN+ASR ECFKC  P+
Sbjct: 102 YGCGVHNYASRGECFKCKTPK 122