Miyakogusa Predicted Gene

Lj3g3v2214670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2214670.1 Non Characterized Hit- tr|I1NC79|I1NC79_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.17876
PE,80.39,5e-18,TruD,Pseudouridine synthase, TruD; TRUD,Pseudouridine
synthase, TruD, insertion domain; Pseudouridin,CUFF.43684.1
         (53 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114850.1 | tRNA pseudouridine synthase | HC | chr7:474059...   104   2e-23

>Medtr7g114850.1 | tRNA pseudouridine synthase | HC |
           chr7:47405990-47418215 | 20130731
          Length = 728

 Score =  104 bits (259), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 1   MMYVHSYQSYLWNHAASTRVQKYGTEQVVLGDLVYCKENPSGNVRELIGPECD 53
           MMYVHSYQSYLWN+AASTRV+KYGTEQVVLGDLVYCKENPS  V  ++GPECD
Sbjct: 457 MMYVHSYQSYLWNNAASTRVKKYGTEQVVLGDLVYCKENPSEKVTGIVGPECD 509