Miyakogusa Predicted Gene
- Lj3g3v2213520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2213520.1 Non Characterized Hit- tr|J3L103|J3L103_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G2,74.14,3e-16,PDEFORMYLASE,Formylmethionine deformylase;
Pep_deformylase,Peptide deformylase; no description,Pepti,CUFF.43679.1
(261 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g011040.1 | peptide deformylase 1A | HC | chr4:2587101-259... 372 e-103
Medtr2g103430.1 | peptide deformylase 1A | HC | chr2:44530541-44... 324 6e-89
Medtr2g103420.1 | peptide deformylase 1A | LC | chr2:44525698-44... 275 2e-74
Medtr7g035310.1 | peptide deformylase 1A | HC | chr7:13439210-13... 93 3e-19
Medtr7g035310.2 | peptide deformylase 1A | HC | chr7:13439210-13... 93 3e-19
>Medtr4g011040.1 | peptide deformylase 1A | HC |
chr4:2587101-2591364 | 20130731
Length = 267
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/264 (71%), Positives = 207/264 (78%), Gaps = 3/264 (1%)
Query: 1 MEALHMQRVLPISAAQNTLFTRPTATPLSGVAMXXXXXXXXXXXXXXXXXXXXXXXXGWF 60
MEALH++ +LP+S +N+LFT T TP S G+F
Sbjct: 4 MEALHLRCILPLSRTKNSLFTLQTTTPFSLSPFSKPPPLTLTLSSSSSQNATIRTRAGFF 63
Query: 61 LGLTADNKK---MKLPDTVKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGV 117
G T D+KK M LPDTVKAGDPVLHEPAQEV+PSEI S++VQKIIDDMIRVMR APGV
Sbjct: 64 FGRTKDDKKKKKMDLPDTVKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGV 123
Query: 118 GLAAPQIGVPLRIIVVEDTKEYISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFF 177
GLAAPQIGV RIIV+EDT+E+ISYAPKE KAQDR PFDLLVILNPKL+ S RTALFF
Sbjct: 124 GLAAPQIGVSSRIIVLEDTEEFISYAPKEVLKAQDRHPFDLLVILNPKLKSTSKRTALFF 183
Query: 178 EGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMV 237
EGCLSVDGFRAVVERHLDVEVTGLDR G PIKI ASGWQARILQHECDHLDGTLYVDKMV
Sbjct: 184 EGCLSVDGFRAVVERHLDVEVTGLDRNGEPIKITASGWQARILQHECDHLDGTLYVDKMV 243
Query: 238 PRTFRTVDNLNLPLGQGCPKLGPR 261
PRTFRTV+N++LPL QGCP LGPR
Sbjct: 244 PRTFRTVENMDLPLAQGCPNLGPR 267
>Medtr2g103430.1 | peptide deformylase 1A | HC |
chr2:44530541-44526335 | 20130731
Length = 257
Score = 324 bits (830), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 152/191 (79%), Positives = 172/191 (90%)
Query: 71 KLPDTVKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRI 130
KLP VKAGDPV+HEPA+EV+ SEIKS+++Q IIDDMI VMR APGVG+AAPQIG+PLRI
Sbjct: 66 KLPYIVKAGDPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRI 125
Query: 131 IVVEDTKEYISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFFEGCLSVDGFRAVV 190
IV+ED +E+I Y +EETKAQDR PFDLLVILNPKL+ KSNRTA FFEGCLSVD F+A+V
Sbjct: 126 IVLEDKEEFICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALV 185
Query: 191 ERHLDVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLNLP 250
ER+LDVEVTG DRYG PIKINASGWQARILQHECDHLDGTLYVDKMVPRTFR+ N++LP
Sbjct: 186 ERYLDVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRSWKNVDLP 245
Query: 251 LGQGCPKLGPR 261
L +GCPKLGPR
Sbjct: 246 LARGCPKLGPR 256
>Medtr2g103420.1 | peptide deformylase 1A | LC |
chr2:44525698-44524200 | 20130731
Length = 280
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 130/186 (69%), Positives = 155/186 (83%)
Query: 69 KMKLPDTVKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPL 128
K +LP V+AGDPVLHEPA+EV+ SEI S+++QKIID MI VMRNAPG+ L+A +IG+PL
Sbjct: 75 KSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPL 134
Query: 129 RIIVVEDTKEYISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFFEGCLSVDGFRA 188
RIIV+E+ KE + +E K DR PFDLLVILNPKL+ KSN+T LFFEGCLSV GF+A
Sbjct: 135 RIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQA 194
Query: 189 VVERHLDVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLN 248
VVER+LDVEV G DRYG PIKINASGW ARILQHECDHLDGTLYVDKMVPRTFR+ +N+N
Sbjct: 195 VVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWENIN 254
Query: 249 LPLGQG 254
+ + +
Sbjct: 255 MSIARA 260
>Medtr7g035310.1 | peptide deformylase 1A | HC |
chr7:13439210-13432030 | 20130731
Length = 253
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 17/165 (10%)
Query: 80 DPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRIIVVEDTKEY 139
DP L + + + + + ++K++D+M VM G+GL+APQ+G+ ++++V E
Sbjct: 68 DPKLRKKNKRIGTFD---DNLKKLVDEMFDVMYETDGIGLSAPQVGINVQLMVFNPVGE- 123
Query: 140 ISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFFEGCLSVDGFRAVVERHLDVEVT 199
R + +V++NP++ K+S ++ EGCLS G R V+R V++
Sbjct: 124 -------------RGEGEEIVLVNPRVGKRSLNRTIYNEGCLSFPGIRGDVKRPEYVKID 170
Query: 200 GLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTV 244
LD G ++ SG ARI QHE DHL G L+ ++M F ++
Sbjct: 171 ALDVKGKRFSVSLSGLPARIFQHEFDHLQGILFFERMADEVFDSI 215
>Medtr7g035310.2 | peptide deformylase 1A | HC |
chr7:13439210-13432089 | 20130731
Length = 222
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 17/165 (10%)
Query: 80 DPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRIIVVEDTKEY 139
DP L + + + + + ++K++D+M VM G+GL+APQ+G+ ++++V E
Sbjct: 68 DPKLRKKNKRIGTFD---DNLKKLVDEMFDVMYETDGIGLSAPQVGINVQLMVFNPVGE- 123
Query: 140 ISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFFEGCLSVDGFRAVVERHLDVEVT 199
R + +V++NP++ K+S ++ EGCLS G R V+R V++
Sbjct: 124 -------------RGEGEEIVLVNPRVGKRSLNRTIYNEGCLSFPGIRGDVKRPEYVKID 170
Query: 200 GLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTV 244
LD G ++ SG ARI QHE DHL G L+ ++M F ++
Sbjct: 171 ALDVKGKRFSVSLSGLPARIFQHEFDHLQGILFFERMADEVFDSI 215