Miyakogusa Predicted Gene

Lj3g3v2210420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2210420.1 tr|E5GCC1|E5GCC1_CUCME AP2/ERF domain-containing
transcription factor (Fragment) OS=Cucumis melo sub,49.52,1e-16,SHN
(SHINE), DNA BINDING / TRANSCRIPTION FACTOR,NULL;
seg,NULL,gene.g48645.t1.1
         (131 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g103700.1 | ethylene response factor | HC | chr2:44649280-...   144   2e-35
Medtr4g010640.1 | ethylene response factor | HC | chr4:2429442-2...   140   3e-34
Medtr4g114570.1 | ethylene response factor | HC | chr4:47101969-...   116   5e-27
Medtr3g107380.1 | ethylene response factor | HC | chr3:49532324-...   105   1e-23
Medtr1g012470.1 | ethylene response factor | HC | chr1:2480838-2...   100   5e-22

>Medtr2g103700.1 | ethylene response factor | HC |
           chr2:44649280-44648214 | 20130731
          Length = 175

 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 91/135 (67%), Gaps = 16/135 (11%)

Query: 1   MSGRNAKTNFPVADKPMGNHXXXXXXXXXXXXX--XXKLRKCCKSPSPSLTCLRLDTENS 58
           MSGRNAKTNFP+  +   N                  KLRKCCK PSPSLTCLRLD ENS
Sbjct: 53  MSGRNAKTNFPINVENQTNSISSSSTSSKAFSAVLSAKLRKCCKFPSPSLTCLRLDAENS 112

Query: 59  HIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPDLVDGSDKVKPEE--GNALDEE 116
           HIGVWQK AGPRS+SNWIMMVELERKK+      + +P      +K KPEE   N LD+E
Sbjct: 113 HIGVWQKGAGPRSESNWIMMVELERKKS------ASVP------EKAKPEELSKNGLDDE 160

Query: 117 QRIALQMIEELLNRN 131
           Q+IALQMIEELLNRN
Sbjct: 161 QKIALQMIEELLNRN 175


>Medtr4g010640.1 | ethylene response factor | HC |
           chr4:2429442-2428183 | 20130731
          Length = 213

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 99/161 (61%), Gaps = 30/161 (18%)

Query: 1   MSGRNAKTNFPVADK-PMGNHXXXXXXXXX----------XXXXXXKLRKCCKSPSPSLT 49
           MSGRNAKTNFPV+D   + N                          KLRKCCKSPSPSLT
Sbjct: 53  MSGRNAKTNFPVSDNNSIANSNNKTFATSSSTSTKPNTSLSAILSAKLRKCCKSPSPSLT 112

Query: 50  CLRLDTENSHIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPD--------LVDG 101
           CLRLDTENSH GVWQKRAGPRSDS+WIMMVELERKK E       LP+        +VD 
Sbjct: 113 CLRLDTENSHFGVWQKRAGPRSDSSWIMMVELERKKKEQEEESEVLPNSDSETLASVVDN 172

Query: 102 SDK---VKP----EEGN----ALDEEQRIALQMIEELLNRN 131
            D    VKP    EEGN     LDEEQRIALQMIEELLNRN
Sbjct: 173 EDSEKAVKPENEDEEGNDKNKGLDEEQRIALQMIEELLNRN 213


>Medtr4g114570.1 | ethylene response factor | HC |
           chr4:47101969-47100854 | 20130731
          Length = 214

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 80/138 (57%), Gaps = 9/138 (6%)

Query: 1   MSGRNAKTNFPVADKPMG-------NHXXXXXXXXXXXXXXXKLRKCCKSPSPSLTCLRL 53
           MSGRNAKTNFP+     G       N                KLRKC K PSPS+TCLRL
Sbjct: 53  MSGRNAKTNFPITQTSEGDPKSITSNENKPSTSKDLEEILHAKLRKCSKVPSPSMTCLRL 112

Query: 54  DTENSHIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPDLVDGSDKVKPEE--GN 111
           DTENSHIGVWQKRAG  S+SNW+M V+L +K +    S S    +   S     EE    
Sbjct: 113 DTENSHIGVWQKRAGKCSESNWVMTVQLGKKMSVTQDSGSSSSSVAPSSAVATEEEIVRG 172

Query: 112 ALDEEQRIALQMIEELLN 129
            +DEE RIALQMIEELLN
Sbjct: 173 EIDEEDRIALQMIEELLN 190


>Medtr3g107380.1 | ethylene response factor | HC |
           chr3:49532324-49533111 | 20130731
          Length = 208

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 84/146 (57%), Gaps = 15/146 (10%)

Query: 1   MSGRNAKTNFPV---------ADKPM---GNHXXXXXXXXXXXXXXXKLRKCCKSPSPSL 48
           M+G++AKTNFPV         +D P    G                 KLRK CK PSPSL
Sbjct: 54  MNGQSAKTNFPVTKNQGEEVASDTPYNGGGGDDSFLSPKALSELLSTKLRKYCKDPSPSL 113

Query: 49  TCLRLDTENSHIGVWQKRAGPRSDSNWIMMVEL-ERKKNEGSTSDSKLPDLVDGSDKVKP 107
           TCLRLD +NSHIGVWQKRAGP SDSNW+M VEL  +KK   S         +DG +    
Sbjct: 114 TCLRLDNDNSHIGVWQKRAGPHSDSNWVMRVELGGKKKTIESEEIGSKQHTIDGGNNSNA 173

Query: 108 E--EGNALDEEQRIALQMIEELLNRN 131
           +      ++EE+R+ALQMIEELLN N
Sbjct: 174 DNENRVVVEEEERVALQMIEELLNWN 199


>Medtr1g012470.1 | ethylene response factor | HC |
           chr1:2480838-2480152 | 20130731
          Length = 197

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 77/150 (51%), Gaps = 26/150 (17%)

Query: 1   MSGRNAKTNFPVADKPM-----------GNHXXXXXXXXXXXXXXXKLRKCCKSPSPSLT 49
           M+G+NAKTNFP+                 N+               KL KCC+  S SLT
Sbjct: 53  MNGKNAKTNFPIPKDQTEDANSLTPNCDDNNNSFHTSNALSHLLKQKLTKCCQKQSQSLT 112

Query: 50  CLRLDTENSHIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPDLVDGSDKVKPE- 108
           CLRLD +NSHIGVWQK AG  SDSNWI+ VEL +K       DS   + V  S+K  P  
Sbjct: 113 CLRLDADNSHIGVWQKGAGSHSDSNWILRVELGKKH-----EDSHESNYVSSSEKSAPNN 167

Query: 109 --------EGNALDEEQRIA-LQMIEELLN 129
                   E N ++ E+ I  +QMIEELLN
Sbjct: 168 STIVGDCAEKNGIEHEEDIVTMQMIEELLN 197