Miyakogusa Predicted Gene

Lj3g3v2210360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2210360.1 tr|C1E0K3|C1E0K3_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_78600
,36.18,2e-16,no description,NULL; SNARE-like,Longin-like
domain,CUFF.43669.1
         (147 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g103690.1 | clathrin adaptor complex small chain | HC | ch...   288   1e-78

>Medtr2g103690.1 | clathrin adaptor complex small chain | HC |
           chr2:44644661-44640039 | 20130731
          Length = 147

 Score =  288 bits (737), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/147 (95%), Positives = 143/147 (97%)

Query: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60
           MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNL+GVKNEELLVACHKSVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLRGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDICGKPPTERVFLDKYGRICLCLDE 120
           VYTVLGDVSIYVVGKD YDELALSEVIF ITSAVKD+CGKPPTER FLDKYGRICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDAYDELALSEVIFTITSAVKDVCGKPPTERRFLDKYGRICLCLDE 120

Query: 121 IVWKGYLENTENDRIKRLLRLKPPTEF 147
           IVWKGYLENTE DRIKRL+RLKPPTEF
Sbjct: 121 IVWKGYLENTEKDRIKRLIRLKPPTEF 147