Miyakogusa Predicted Gene

Lj3g3v2188190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2188190.1 Non Characterized Hit- tr|I1KMK9|I1KMK9_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,68,0.000000000004, ,CUFF.43656.1
         (62 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g045450.1 | pentatricopeptide (PPR) repeat protein | HC | ...    77   5e-15
Medtr2g016780.1 | editing factor, putative | HC | chr2:5197710-5...    50   4e-07

>Medtr3g045450.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:14788174-14785760 | 20130731
          Length = 804

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 41/50 (82%)

Query: 1   MTPNSVTLSSMLPVLGEFGFFKSGMEVRAFTLRMGIEFDIFIANSMIDIF 50
           M PN VT+SSMLPVLGE G FK GMEV  ++LRMGIE DIFI NS+ID++
Sbjct: 334 MRPNPVTISSMLPVLGELGLFKLGMEVHGYSLRMGIESDIFIGNSLIDMY 383


>Medtr2g016780.1 | editing factor, putative | HC |
           chr2:5197710-5195940 | 20130731
          Length = 551

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 1   MTPNSVTLSSMLPVLGEFGFFKSGMEVRAFTLRMGIEFDIFIANSMIDIF 50
           + PN VT++++LP  G  G  K G EV  F  R G + ++FIA+++ID++
Sbjct: 283 ICPNQVTIAALLPACGSVGSVKWGREVHGFICRKGFDANVFIASALIDMY 332