Miyakogusa Predicted Gene

Lj3g3v2187020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2187020.1 Non Characterized Hit- tr|I3SFH5|I3SFH5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.28,0,seg,NULL,CUFF.43653.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g010140.1 | post-illumination chlorophyll fluorescence inc...   426   e-119
Medtr4g010140.2 | post-illumination chlorophyll fluorescence inc...   328   2e-90

>Medtr4g010140.1 | post-illumination chlorophyll fluorescence
           increase | HC | chr4:2247152-2240765 | 20130731
          Length = 280

 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/280 (75%), Positives = 234/280 (83%), Gaps = 6/280 (2%)

Query: 1   MAATNASIFASSTTQPCLPI-----RIPNTLASTFLNVSLPRCYLVKERNVKVTRTINAA 55
           MAATNASIFASST QPC  +      I NT  S FLNVSLPRCY +KER+VKV   +NAA
Sbjct: 1   MAATNASIFASST-QPCFSVTTRSHSITNTFGSNFLNVSLPRCYPMKERHVKVRHVVNAA 59

Query: 56  VAVATTPAQEIEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNE 115
            AVAT+P +EI+EYK+PSWA FELGKA+VYWKT NG+ PTSGEKLKLFYNP + QLAPNE
Sbjct: 60  AAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAAQLAPNE 119

Query: 116 EFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWD 175
           EFGIAFNGGFNQPIMCGGEPRAMLRKDRGKAD+PIYSIQICVPKHALNLIFSFTNGVDWD
Sbjct: 120 EFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHALNLIFSFTNGVDWD 179

Query: 176 GPYRLQFQVPKVLQNKPIEFFNXXXXXXXXXXXXXXQAIFPDSNKVITKCAMLGNLTVEG 235
           GPYRLQFQVPK LQNKPIEFFN              QAIFPD+  VI KCAM+GNL+ EG
Sbjct: 180 GPYRLQFQVPKPLQNKPIEFFNEGLAEELSKEGACEQAIFPDTTAVIEKCAMIGNLSKEG 239

Query: 236 GDRCDLNLVEGCTDPSSHLYNPLANVDDGTCPLDLDSDSE 275
           GDRC+LNLV GC DPSS LY+P+ANVDDG+CP+++DSDS+
Sbjct: 240 GDRCELNLVPGCIDPSSPLYDPMANVDDGSCPIEVDSDSD 279


>Medtr4g010140.2 | post-illumination chlorophyll fluorescence
           increase | HC | chr4:2247152-2241512 | 20130731
          Length = 209

 Score =  328 bits (842), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/202 (81%), Positives = 177/202 (87%), Gaps = 6/202 (2%)

Query: 1   MAATNASIFASSTTQPCLPI-----RIPNTLASTFLNVSLPRCYLVKERNVKVTRTINAA 55
           MAATNASIFASST QPC  +      I NT  S FLNVSLPRCY +KER+VKV   +NAA
Sbjct: 1   MAATNASIFASST-QPCFSVTTRSHSITNTFGSNFLNVSLPRCYPMKERHVKVRHVVNAA 59

Query: 56  VAVATTPAQEIEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNE 115
            AVAT+P +EI+EYK+PSWA FELGKA+VYWKT NG+ PTSGEKLKLFYNP + QLAPNE
Sbjct: 60  AAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAAQLAPNE 119

Query: 116 EFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWD 175
           EFGIAFNGGFNQPIMCGGEPRAMLRKDRGKAD+PIYSIQICVPKHALNLIFSFTNGVDWD
Sbjct: 120 EFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHALNLIFSFTNGVDWD 179

Query: 176 GPYRLQFQVPKVLQNKPIEFFN 197
           GPYRLQFQVPK LQNKPIEFFN
Sbjct: 180 GPYRLQFQVPKPLQNKPIEFFN 201