Miyakogusa Predicted Gene

Lj3g3v2185860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2185860.1 Non Characterized Hit- tr|I1KGZ4|I1KGZ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39705
PE,75.3,0,Ribonuclease H-like,Ribonuclease H-like domain; seg,NULL;
Dimer_Tnp_hAT,HAT dimerisation; DUF4413,Do,CUFF.43625.1
         (595 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g036325.1 | hypothetical protein | LC | chr4:13081348-1308...    62   2e-09
Medtr4g107900.1 | hypothetical protein | LC | chr4:44722346-4472...    51   3e-06
Medtr7g106390.1 | hypothetical protein | LC | chr7:43304641-4330...    51   3e-06
Medtr4g120840.1 | hypothetical protein | HC | chr4:50046505-5004...    51   3e-06

>Medtr4g036325.1 | hypothetical protein | LC |
           chr4:13081348-13082899 | 20130731
          Length = 204

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 51  MIILHDYP-LHIVEQQGFIDFARILQPQFNPLCLKSIEADCVAIYLKEKQNLLNFINGIS 109
           MII+H+YP L IV+  GF  ++  LQ  F      ++++D + IY  EK   +  ++ I 
Sbjct: 1   MIIIHEYPPLSIVDHLGFRAYSEGLQHLFKVPSRNTVKSDIIKIYENEKLKTMGLLDKIE 60

Query: 110 ARVNLTLDLWT-SNQTTVYVFIRGHFIDRDWNLHHPIL 146
           +++ LT  + T SNQ   Y+ I  H+I  DW++   IL
Sbjct: 61  SKIALTSYMLTASNQKKGYMVITAHYISDDWSMQSRIL 98


>Medtr4g107900.1 | hypothetical protein | LC |
           chr4:44722346-44721183 | 20130731
          Length = 181

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 13  KTGGSRD----TVNRLKKRPRTTPVG--NGISFDQERCNQDIAKMIILHDYPLHIVEQQG 66
           K  GS D    T+ +LKK   T      +G+ FD E C + +AKMII+ + P   +E + 
Sbjct: 79  KGEGSNDKQTQTLQQLKKEDETGTGSTLSGVHFDVEACRKALAKMIIVDELPFKFLEGEE 138

Query: 67  FIDFARILQPQFNPLCLKSIEADCVAIYLKEKQNL 101
           F  F  ++QP+F      S+  DC  I  KEK  L
Sbjct: 139 FRYFVSVVQPRFPIPSRISVAIDCWDILTKEKHKL 173


>Medtr7g106390.1 | hypothetical protein | LC |
           chr7:43304641-43305804 | 20130731
          Length = 181

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 13  KTGGSRD----TVNRLKKRPRTTPVG--NGISFDQERCNQDIAKMIILHDYPLHIVEQQG 66
           K  GS D    T+ +LKK   T      +G+ FD E C + +AKMII+ + P   +E + 
Sbjct: 79  KGEGSNDKQTQTLQQLKKEDETGTGSTLSGVHFDVEACRKALAKMIIVDELPFKFLEGEE 138

Query: 67  FIDFARILQPQFNPLCLKSIEADCVAIYLKEKQNL 101
           F  F  ++QP+F      S+  DC  I  KEK  L
Sbjct: 139 FRYFVSVVQPRFPIPSRISVAIDCWDILTKEKHKL 173


>Medtr4g120840.1 | hypothetical protein | HC |
           chr4:50046505-50047138 | 20130731
          Length = 109

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 39  FDQERCNQDIAKMIILHDYPLHIVEQQGFIDFARILQPQFNPLCLKSIEADCVAIYLKEK 98
            + E    +IA+++IL   P  +VE   F    ++LQP +N    +++  DC  ++  EK
Sbjct: 13  LELELLEGNIARLVILSKLPFSVVESDRFNRLCKLLQPLWNIPSRRTVARDCFRMFRDEK 72

Query: 99  QNLLNFINGISARVNLTLDLWTSNQTTVYV 128
             L+ +     +++ LT  +WTS Q   Y+
Sbjct: 73  FKLIAYFKSDCSKLALTPKVWTSIQNFSYI 102