Miyakogusa Predicted Gene

Lj3g3v2184850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2184850.1 Non Characterized Hit- tr|F6HYM4|F6HYM4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,31.31,0.0000004,seg,NULL,CUFF.43844.1
         (522 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g009960.1 | eukaryotic translation initiation factor 3 sub...   504   e-143

>Medtr4g009960.1 | eukaryotic translation initiation factor 3 subunit
            | HC | chr4:2156354-2144712 | 20130731
          Length = 1638

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 297/538 (55%), Positives = 356/538 (66%), Gaps = 54/538 (10%)

Query: 4    RRKGVQRIVPVSDNNCEEHVDT-VADEDILFDNSNDAKTTGEGNIEEKNGTRDSEELKEN 62
            R++   +I+P+SDNN +EH DT + D+ ++ DN+ DA    EG IEE      +EE K+ 
Sbjct: 1136 RKQRRPKILPISDNNSQEHDDTPIVDDIVIVDNAKDAAKAVEGKIEEPKAKHGTEEPKKI 1195

Query: 63   GDLTRYTPV-TSEVVYETSSDEGWKEASSKGRSANAANRKFARRQRPHLSKLSINGSDRG 121
             DL+ + PV T E VYETSSDEGW+EA+SKGRS NAANRK  RRQRP LSKL++ GSD  
Sbjct: 1196 VDLSMHKPVVTVEAVYETSSDEGWQEANSKGRSGNAANRKSGRRQRPVLSKLTVKGSDNH 1255

Query: 122  I----SYRNDIASPLEKGAPKVIAGMSSPSRQSKARNLSLKEDSVNKQTKALLSKNXXXX 177
            +    SYRND  +  +K APKV + M SPSR+SK               KAL SK     
Sbjct: 1256 MYKEASYRND-TTLHQKAAPKVASAMLSPSRKSKT-------------PKALSSKISSTP 1301

Query: 178  XXXXXXXXXXXXYKEVAVAPPGTVLKPLLEKGEIERVSAENEICSSSSVMPLNEGSSQSS 237
                        YKEVA APPGTVLKPLLEK E E+V+ ENE       MP NEGS ++S
Sbjct: 1302 ASLSSLASKSISYKEVAAAPPGTVLKPLLEKTETEKVNDENE-------MPKNEGSVETS 1354

Query: 238  IINPVSQEDKSEGT------CEIESQQENSEPELETVSLASDKAKLAEANCSKLSAAAKP 291
              + V Q+D+ E +       + ES+Q+NS  ELE VS +SD+AK +E N SKLSAAAKP
Sbjct: 1355 NADTVPQKDEKEPSDADTDPQQDESEQDNSSSELEKVSPSSDQAKSSETNGSKLSAAAKP 1414

Query: 292  FNPGTLSLSHQLNSASFTTIYDANVSQAVLVEPVLPPAAARVPCGPRSPLYYRTNYAFRM 351
            F+PGTLS S  LN     +IYDANVS  +LVEPVLPPAAARVPCGPRSPLYYRTNY FRM
Sbjct: 1415 FSPGTLSASRHLNPVPPASIYDANVSPGILVEPVLPPAAARVPCGPRSPLYYRTNYTFRM 1474

Query: 352  ------VRERSGFGAPRIMNPHAPEFVPRGASQTETGDSEKNKLDDXXXXXXXXXXXXXX 405
                  +RE SG G P+IMNPHAPEFVPR ASQ ET  SEKN                  
Sbjct: 1475 KHSSTKIREISGSGGPKIMNPHAPEFVPRSASQIET--SEKN----STSKNSLSESEKSE 1528

Query: 406  XARQILLSFLVKSVHQNIDSTDESKVGDRKIENLGNSSDDIAKENAVIKIKYGNEKKNKT 465
             ARQILLSFLVKSVHQN D+ DE KV + K+E+  NSSD++AK++AVIKI YG E+KNKT
Sbjct: 1529 IARQILLSFLVKSVHQNADAVDEPKVSEGKVESFENSSDEVAKDSAVIKIMYGTEEKNKT 1588

Query: 466  VTHSR-ESEEQEKLDVTGKKDGDSEGFVVVTNKKKNRQKITNGVSELYNQQSICASVR 522
            V +S  +SEEQ+ L        D EGFVVVTN++K+RQK TNGV+ELYNQ SICASVR
Sbjct: 1589 VVNSSDDSEEQDNL--------DGEGFVVVTNRRKSRQKTTNGVAELYNQPSICASVR 1638