Miyakogusa Predicted Gene

Lj3g3v2174800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2174800.1 Non Characterized Hit- tr|C0PJC4|C0PJC4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,60.32,0.00000000000003,seg,NULL,CUFF.43616.1
         (160 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g015620.1 | dentin sialophosphoprotein-like protein | HC |...   197   5e-51
Medtr1g021875.1 | hypothetical protein | LC | chr1:6649638-66467...    53   1e-07
Medtr8g015610.1 | occludin-like domain protein | LC | chr8:51382...    49   2e-06

>Medtr8g015620.1 | dentin sialophosphoprotein-like protein | HC |
           chr8:5148947-5140148 | 20130731
          Length = 1220

 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 1   MIIRLAPDLVDEIKRLEAQGLNARMKFDXXXXXXXXXIIDVGGKEFRFTWSREPGDLCDI 60
           MIIRLAPDL++EIKR+EAQG   RMKFD         IIDVGGKEFRFTWSR+ GDLCDI
Sbjct: 68  MIIRLAPDLIEEIKRVEAQGGTPRMKFDPNPNNPNGNIIDVGGKEFRFTWSRD-GDLCDI 126

Query: 61  YEEPQSXXXXXXXXXXSGCAWRKLNVQRILDESAKKQVKMRSKEAELKHKSRKAIVLEPG 120
           YE+ QS          SGCAWRK+NVQRILDES K +VKMRS+EAE K KSRKAIVLEPG
Sbjct: 127 YEQRQSGVDGNGLLVESGCAWRKVNVQRILDESTKNRVKMRSEEAEHKLKSRKAIVLEPG 186

Query: 121 NPHMKSQIKALAAVEATTW 139
           NP  KSQ+KA+AAVEAT+W
Sbjct: 187 NPSTKSQMKAVAAVEATSW 205


>Medtr1g021875.1 | hypothetical protein | LC | chr1:6649638-6646734
           | 20130731
          Length = 322

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 53  EPGDLCDIYEEPQSXXXXXXXXXXSGCAWRKLNVQRILDESAKKQVKMRSKEA 105
           E  DLCD  E+ Q           SGCAWRK+N+QRIL+ES K  VKMRS EA
Sbjct: 3   EGDDLCDSLEQHQGVDGNGLLVE-SGCAWRKVNLQRILEESTKNLVKMRSHEA 54


>Medtr8g015610.1 | occludin-like domain protein | LC |
           chr8:5138213-5130677 | 20130731
          Length = 1017

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 29/49 (59%)

Query: 110 KSRKAIVLEPGNPHMKSQIKALAAVEATTWXXXXXXXXXXXXXXXVETL 158
           ++ +AI LEPG P MKSQIKALAA EATTW               VETL
Sbjct: 174 RNSQAIDLEPGKPSMKSQIKALAADEATTWKNYHKMEVAGLKERQVETL 222