Miyakogusa Predicted Gene

Lj3g3v2171540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2171540.1 tr|C1E986|C1E986_MICSR 30S ribosomal protein S15
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPU,43.48,2e-16,Ribosomal_S15,Ribosomal protein S15; S15/NS1
RNA-binding domain,S15/NS1, RNA-binding; seg,NULL; no d,CUFF.43599.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g009100.1 | 30S ribosomal protein S15 | HC | chr4:1769902-...   271   3e-73
Medtr4g009100.2 | 30S ribosomal protein S15 | HC | chr4:1769902-...   172   2e-43

>Medtr4g009100.1 | 30S ribosomal protein S15 | HC |
           chr4:1769902-1764449 | 20130731
          Length = 423

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 137/178 (76%), Positives = 152/178 (85%), Gaps = 9/178 (5%)

Query: 2   KLREMEMNDDKSNLSSAMMGALSKIDKD-------EKSKKP--SLQRIDMLGLLGGTPDY 52
           K+REM+  D KS+ SSA    +  I KD       ++++KP  SLQRIDML L+GGTP Y
Sbjct: 238 KVREMDEIDAKSSKSSADTNQVFNILKDSVQHIKAKEAEKPKASLQRIDMLSLIGGTPSY 297

Query: 53  LLKPPKEHLVEKYFHPDNLSSAEKLKIELTKVRDEFKMSESDCGSARVQVAQLTTKIKHL 112
           L KPPKEHLVEKYFHPDN+SSAEKLKIELTKVRDEFKMSESDCGSARVQVA LTTKIKHL
Sbjct: 298 LSKPPKEHLVEKYFHPDNMSSAEKLKIELTKVRDEFKMSESDCGSARVQVATLTTKIKHL 357

Query: 113 SSVLHKKDVHSRKGLVAMVQKRKSLLKYLRRTDWDSYCFVISKLGLRDNPDYSHKIRT 170
           SSVLHKKDVHSRKGL+AMVQKRK LLKYLRRTDWDSYCFV+SKLGLRDNP+Y++K RT
Sbjct: 358 SSVLHKKDVHSRKGLIAMVQKRKKLLKYLRRTDWDSYCFVLSKLGLRDNPEYTYKART 415


>Medtr4g009100.2 | 30S ribosomal protein S15 | HC |
           chr4:1769902-1766954 | 20130731
          Length = 380

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 103/127 (81%), Gaps = 9/127 (7%)

Query: 2   KLREMEMNDDKSNLSSAMMGALSKIDKD-------EKSKKP--SLQRIDMLGLLGGTPDY 52
           K+REM+  D KS+ SSA    +  I KD       ++++KP  SLQRIDML L+GGTP Y
Sbjct: 238 KVREMDEIDAKSSKSSADTNQVFNILKDSVQHIKAKEAEKPKASLQRIDMLSLIGGTPSY 297

Query: 53  LLKPPKEHLVEKYFHPDNLSSAEKLKIELTKVRDEFKMSESDCGSARVQVAQLTTKIKHL 112
           L KPPKEHLVEKYFHPDN+SSAEKLKIELTKVRDEFKMSESDCGSARVQVA LTTKIKHL
Sbjct: 298 LSKPPKEHLVEKYFHPDNMSSAEKLKIELTKVRDEFKMSESDCGSARVQVATLTTKIKHL 357

Query: 113 SSVLHKK 119
           SSVLHKK
Sbjct: 358 SSVLHKK 364