Miyakogusa Predicted Gene

Lj3g3v2097070.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2097070.1 Non Characterized Hit- tr|A5B848|A5B848_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.48,0.0000000003,DUF1995,Domain of unknown function DUF1995;
seg,NULL,CUFF.43577.1
         (380 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g007190.1 | Low PSII accumulation protein | HC | chr4:9882...   613   e-176
Medtr5g027220.1 | plant/K24G6-12 protein | HC | chr5:11297763-11...    50   3e-06

>Medtr4g007190.1 | Low PSII accumulation protein | HC |
           chr4:988275-995311 | 20130731
          Length = 379

 Score =  613 bits (1582), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 298/380 (78%), Positives = 331/380 (87%), Gaps = 3/380 (0%)

Query: 1   MVLSMAISSLPHNSTFLHPLAQFHSPSPSSSQTLRNLPFRLTTRIQSVGVGREAASSQPG 60
           + ++MA+SSLPHN TFL       S S S++++LRN       +I+ +   REA+SS P 
Sbjct: 3   LSMAMAMSSLPHNLTFLPSHLSPLSSSISTTKSLRNTSL---FKIKCIKTEREASSSDPN 59

Query: 61  SGPDPKAGVSLYKPKSYEVLVTDAAKSLALALQDGTLRLEIDFPPLPXXXXXXXXXXDDF 120
            G DPK+GVS+YKPKSYEVL TDAA SL  ALQDG LR+EIDFPPLP          DDF
Sbjct: 60  RGFDPKSGVSVYKPKSYEVLATDAANSLNFALQDGKLRIEIDFPPLPSNISSYKGSSDDF 119

Query: 121 IDANIQLALAVVRKLQEKKETRACIVFPDKPEKRRASELFKAAMDSIDGITIGSLDDVPG 180
           IDANIQL LAVV+KLQEKKETRAC+VFPDKPEK RAS+LFKAA+DS+DG+TIGSLDD+P 
Sbjct: 120 IDANIQLVLAVVKKLQEKKETRACVVFPDKPEKLRASQLFKAALDSVDGLTIGSLDDIPA 179

Query: 181 GPMTSFFRSVRSTLDFDFEDENEGRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPSTP 240
           GP+ SFFRSVR+TLDFDFEDENEGRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPSTP
Sbjct: 180 GPVASFFRSVRNTLDFDFEDENEGRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPSTP 239

Query: 241 ALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFTPVFYIRIRDYSKTVAIAPYIVNYSGA 300
            LLFNLELDTLRADLGLLGFPPKDL YRFLSQFTPVFYIRIRDYSKT+A+APYIVNYSGA
Sbjct: 240 TLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTPVFYIRIRDYSKTIAVAPYIVNYSGA 299

Query: 301 VFRQYPGPWQVMLKQADGSFACIAESATRFTLGEAKEELLRVLGLQEEEGSSLQFLRRGY 360
           VFRQYPGPWQVMLKQADGS+AC+AESATRFTLGEAKEELLRVLGLQEE GSSL+FLRRGY
Sbjct: 300 VFRQYPGPWQVMLKQADGSYACVAESATRFTLGEAKEELLRVLGLQEEVGSSLEFLRRGY 359

Query: 361 KASTWWEEDSDLELSSAWRN 380
           ++STWWEEDS+LE+SSAWR 
Sbjct: 360 RSSTWWEEDSELEVSSAWRT 379


>Medtr5g027220.1 | plant/K24G6-12 protein | HC |
           chr5:11297763-11294001 | 20130731
          Length = 320

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 48/281 (17%)

Query: 74  PKSYEVLVTDAAKSLALALQDGTLRLEIDFPPLPXXXXXXXXXXDDFIDANIQLALAVVR 133
           P  Y  L+  A  ++ LA++D    +EI+FP                +  ++QL      
Sbjct: 71  PFDYSELLEQAKVAVELAMKDNKQLMEIEFPTAGLESVPGDGEGGIEMTGSMQLIREFCD 130

Query: 134 -KLQEKKETRACIVFPDKPEKRRASE-LFKAAMDSIDGITIGSLDDVPGGPMTSFFRSVR 191
             +  +K TR  I FP+  E   A +  F  A   +D +T             SFF+   
Sbjct: 131 LSISAEKITRTRIFFPEANEVDFARQSAFSGASFKLDYLT-----------KPSFFQ--- 176

Query: 192 STLDFDFEDENE--GRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPST--PALLFNLE 247
              DF F ++ +   R ++ +   +  +   +  E+  +E+  ++   +T    ++FN E
Sbjct: 177 ---DFGFVEKVKMSDRVKAEDELFVVAYPYFNVNEMLVVEELYKEAVVNTERKLIIFNGE 233

Query: 248 LDTLRADLGLLGFPPKDLHYRFLSQFTPVFYIRIRDYSKT----VAIAPYIVNYSG---- 299
           LD +R+     G+ P            P FY ++   +K+    +    YI N+ G    
Sbjct: 234 LDRIRS-----GYYP------------PFFYPKLAGLTKSFLPSMETVYYIHNFKGRDRG 276

Query: 300 AVFRQYPGPWQVMLKQADGSFACIAESATRFTLGEAKEELL 340
            +FR YPGPW+V+ +     F C+ +  T  +L E   ++L
Sbjct: 277 ILFRCYPGPWKVLRRVGSSKFVCLHQQDTMPSLKEVALDIL 317