Miyakogusa Predicted Gene

Lj3g3v2096000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2096000.1 tr|B7FGJ2|B7FGJ2_MEDTR Ribosomal protein L34
OS=Medicago truncatula PE=2
SV=1,59.52,0.000000000000005,seg,NULL,83303_g.1
         (84 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g017420.1 | ribosomal protein L34 | HC | chr8:5907605-5911...    74   3e-14

>Medtr8g017420.1 | ribosomal protein L34 | HC |
          chr8:5907605-5911187 | 20130731
          Length = 133

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 1  MASKTLLRSGSTLLNRFS--NSKSXXXXXXXXXXXXXQLFQIPTLSKPTSSPQNDADSPS 58
          MASK+LLR+G+ LLNR S  NSKS             Q +  P++SK  + PQ+DA+S  
Sbjct: 1  MASKSLLRNGAALLNRLSLSNSKSLINYNNP------QPYLFPSISKLQNFPQDDAESVK 54

Query: 59 KLLASQGFLYPCGLPDLSFFLPQA 82
          KLL S GFLYPCGLP L FFLP  
Sbjct: 55 KLLCSDGFLYPCGLPSLRFFLPDG 78