Miyakogusa Predicted Gene

Lj3g3v2074860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2074860.1 tr|B9HZ13|B9HZ13_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_567987 PE=4
SV=1,25.74,0.00000000000008,seg,NULL; F-box domain,F-box domain,
cyclin-like; no description,NULL; FAMILY NOT NAMED,NULL;
F-box,,CUFF.43551.1
         (379 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g007240.1 | F-box protein | HC | chr4:1050614-1049403 | 20...   374   e-104
Medtr8g102000.1 | F-box protein | LC | chr8:42876159-42874960 | ...   332   3e-91
Medtr4g124160.1 | hypothetical protein | LC | chr4:51273467-5127...   123   3e-28

>Medtr4g007240.1 | F-box protein | HC | chr4:1050614-1049403 |
           20130731
          Length = 383

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/374 (51%), Positives = 233/374 (62%), Gaps = 13/374 (3%)

Query: 3   DISSGK-PSLSNINHFSDDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQ 61
           DISS K  S+ +I + SDDLL +IF  +PFRS  GCKC SKRWLDLISSP FI+QF + Q
Sbjct: 5   DISSAKLSSMCDITYLSDDLLAKIFSLVPFRSTVGCKCVSKRWLDLISSPYFIKQFTSYQ 64

Query: 62  NNLFNAFLIFLTPHELMLGFITXXXXXXXXXXXXXXXXXXVKXXXXXXXXXXXXXXXTRY 121
           ++LF +  IF+TPHE++L F                    +K                RY
Sbjct: 65  HSLFKSIFIFVTPHEVVLAF--HEQNPSLERPISFGLDMLIKGSVCGCSNGLFLCCKNRY 122

Query: 122 TTGNGYSIYNPLTKQCTQIAPSPANQIGNLYAVGFVCDPFFGLSREVVAAAAESLVQVQR 181
           T G  Y IY+PL K+C  I PSP+    +L+AVGF+C+P            A  +     
Sbjct: 123 TYGIDYYIYDPLMKKCVPIPPSPSTCNESLFAVGFICNP----------TGAAVITPSPN 172

Query: 182 DXXXXXXXXXXXXXXXXXXXXXXXXXXTGTWEQTVVTCPDGFAFAPHWLLSVEYEGFLYF 241
           +                          TG+W++ V+  PDGFAFAPHWLLS  Y G LYF
Sbjct: 173 ERNFRVVIIKSFIKRLFEMELYVFSSETGSWKRVVMIIPDGFAFAPHWLLSFSYGGSLYF 232

Query: 242 MGRTSIFVFDPYSKESDVLDYPDDADSMNIMSFGFLGTCCGRLRIADIGLNYLTVWELIE 301
           MGRTSIFVFDPY+   D L+YP +ADSMNIMSFGFLG  CG LRIADIG N L VWEL+E
Sbjct: 233 MGRTSIFVFDPYTNTRDTLNYPLEADSMNIMSFGFLGISCGCLRIADIGQNNLRVWELVE 292

Query: 302 NDYWDLVHTTNLSTKLPDKFCNNYYKRVAGFHPYDGDIVYLHSYADGVFVANLGTDEFEA 361
            ++WDL+H+ ++S K+  KFC NYYK+VAGFHPYDGDIVYLHSYADGVF+ NL TD FE 
Sbjct: 293 KNHWDLLHSIDISKKMSKKFCGNYYKKVAGFHPYDGDIVYLHSYADGVFICNLRTDTFEV 352

Query: 362 IPGYEKSDISPFQL 375
           +PGYEK DISPFQL
Sbjct: 353 VPGYEKIDISPFQL 366


>Medtr8g102000.1 | F-box protein | LC | chr8:42876159-42874960 |
           20130731
          Length = 399

 Score =  332 bits (852), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 218/368 (59%), Gaps = 17/368 (4%)

Query: 14  INHFSDDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQNNLFNAFLIFLT 73
           I++ SDDLL +IF R+P RS   CKC SKRWL LIS+  FI+QF + Q++LF + LIF+T
Sbjct: 26  IDYLSDDLLGQIFTRVPSRSTVACKCVSKRWLSLISNTDFIKQFTSHQHSLFKSMLIFVT 85

Query: 74  PHELMLGFITXXXXXXXXXXXXXXXXXXV----KXXXXXXXXXXXXXXXTRYTTGNGYSI 129
           P ELML F                    +                     RYT G+GY +
Sbjct: 86  PRELMLAFWDQSQHNQSLEIPISFPPDMLIKGKGSSICGCSNGLFLCCNNRYTYGSGYYV 145

Query: 130 YNPLTKQCTQIA-PSPA-NQIGNLYAVGFVCDPFFGLSREVVAAAAESLVQVQRDXXXXX 187
           Y+PL K    I  PSP    I NLYAVGFVC P     ++V A  +              
Sbjct: 146 YDPLVKGRIDIPDPSPPLTCIENLYAVGFVCKP----KQKVTARRSNK-------HNFRV 194

Query: 188 XXXXXXXXXXXXXXXXXXXXXTGTWEQTVVTCPDGFAFAPHWLLSVEYEGFLYFMGRTSI 247
                                TG W   V+  P GFAFAPHWLLS  Y G LYFMGR +I
Sbjct: 195 VIIKSFLVRVSEIKVDVFSSKTGQWNHIVMKIPKGFAFAPHWLLSFSYCGKLYFMGRANI 254

Query: 248 FVFDPYSKESDVLDYPDDADSMNIMSFGFLGTCCGRLRIADIGLNYLTVWELIENDYWDL 307
           FVFDPYS++   ++YP +AD+MNI+S GFLG  C RLRIADI  + L VWE +E + WDL
Sbjct: 255 FVFDPYSRKRYTINYPSEADAMNIVSCGFLGISCSRLRIADIRQHDLRVWEHVEKNQWDL 314

Query: 308 VHTTNLSTKLPDKFCNNYYKRVAGFHPYDGDIVYLHSYADGVFVANLGTDEFEAIPGYEK 367
           +H  ++STKLP KFC NYYKRVAGFHP+DGDIVYLHSYA+G+FV  LGT +FEA+PGYEK
Sbjct: 315 LHCIDISTKLPQKFCVNYYKRVAGFHPFDGDIVYLHSYAEGIFVCYLGTRKFEAVPGYEK 374

Query: 368 SDISPFQL 375
           +DISPFQL
Sbjct: 375 ADISPFQL 382


>Medtr4g124160.1 | hypothetical protein | LC |
           chr4:51273467-51274864 | 20130731
          Length = 424

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 172/412 (41%), Gaps = 52/412 (12%)

Query: 14  INHFSDDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQNNLFNAF----- 68
           + + SDDLL+EI+ R+ +++   CK  SKR+L LIS   FI++ I   + L         
Sbjct: 1   MENLSDDLLIEIWSRVSYKTAVSCKSISKRFLALISQLQFIERSILHHHTLLQQMKEQEN 60

Query: 69  -----LIFLTPHELMLGFITXXXXXXXXXXXXXXXXXXVKXXXXXXXXXXXXXXXTRY-- 121
                  F++  +L++ F                                     +R   
Sbjct: 61  QKKWHFNFISKRKLLISFSPNLNLSTPENQISLCFLGRKFDPKLDNITRKKHVLYSRIVG 120

Query: 122 -----------TTGNGYSIYNPLTKQCTQIAPSPANQIG----NLYAVGFVCDPFF--GL 164
                      T G  Y + N LTK   ++   P    G    +    GFVC+P++  G 
Sbjct: 121 FSNGLFLCKKTTRGRVYHVCNILTKDWIKLPLPPPPGTGHNKRDRVLEGFVCEPYYSIGE 180

Query: 165 SREVVAAAAESLVQVQRDXXXXXXXXXXXXXXXXXXXXXXXXXXTGTWEQTVVTCPDGFA 224
           S + V+        V+                            TG W +  V+CP+G +
Sbjct: 181 STKKVSFNHHRFRVVRFPCFEGTISEILWGITKSEFEMVVFSSETGQWSKKNVSCPNGLS 240

Query: 225 FAPHWLLS--VEYEGFLYFMGRTSIFVFDPYS--KESDVLDYPDDADSMNIMSFGFLGTC 280
           F    +L   V +E  LYFMG+TSI V+DP++  ++ +++++P DA + +I+  G +G C
Sbjct: 241 FTRPAILPYVVAHENILYFMGKTSILVYDPFNNDEKCEIINFPSDASANDILFNGHVGVC 300

Query: 281 CGRLRIADIGL--NYLTVWELIENDYWDLVHTTNLSTKLPDKFC--------------NN 324
            G+ R+A       ++ VWEL ++  W L+H T     +P + C               +
Sbjct: 301 RGKFRMACFCTLRCFVKVWELEQDYSWSLLHVTCFPP-IPVRDCIVDELLMTGGRNEIVD 359

Query: 325 YYKRVAGFHPYDGDIVYLHSYADGVFVANLGTDEFEAIPGYEKSDISPFQLV 376
              +V   HPYDGD+V+L   A  +FV NL T+E E + GY        Q++
Sbjct: 360 MGTQVRAIHPYDGDVVFLQR-AHRIFVGNLKTNEIEGV-GYGIHGFQSLQMI 409