Miyakogusa Predicted Gene

Lj3g3v2059600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2059600.1 tr|B9GLP9|B9GLP9_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_639740
PE=4,58.11,0.000000000000002,seg,NULL,CUFF.43547.1
         (242 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g007910.1 | hypothetical protein | HC | chr4:1312112-13161...   400   e-112

>Medtr4g007910.1 | hypothetical protein | HC | chr4:1312112-1316121
           | 20130731
          Length = 299

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/228 (83%), Positives = 201/228 (88%)

Query: 15  VPLEFEGPILVCTRNDDLDSVLQSTPPSRWNDLVFFQNGMLDPWLQSKGLSDANQVLAYF 74
           +PL+FEGPILVCTRNDDLDSVLQ+TP SRW DLVFFQNGML+PWL+SKGL D NQVLAYF
Sbjct: 72  IPLDFEGPILVCTRNDDLDSVLQTTPLSRWKDLVFFQNGMLEPWLESKGLKDGNQVLAYF 131

Query: 75  AVSKLGETPIDGKTDTNPEGLTAAYGKWASVVSARLHAGGLSCKVLDKEAFQKQMLEKLI 134
           AVSKLGE+PIDGKTDTNPEGLTAAYGKW+S VS RL AGGLSCKVLDKEAFQKQMLEKLI
Sbjct: 132 AVSKLGESPIDGKTDTNPEGLTAAYGKWSSAVSERLQAGGLSCKVLDKEAFQKQMLEKLI 191

Query: 135 WICSVMLVGARHGGVSVGNVEKEFHXXXXXXXXXXXXXXXXXKGLTFEEGMEDRMCAYSR 194
           WICSVMLVGARHGGVSVG VEKEFH                 KGLTFE+ MEDR+CAYSR
Sbjct: 192 WICSVMLVGARHGGVSVGVVEKEFHLELCSLIAELASAAASEKGLTFEQAMEDRLCAYSR 251

Query: 195 AVAHFPTAVKEFKWRNGWFYSLSEKATAQGKQDPCPLHTQWLKELKIV 242
           AVAHFPTAVKEFKWRNGWFY+LSEKA AQGKQDPCPLHT+WLKELKIV
Sbjct: 252 AVAHFPTAVKEFKWRNGWFYALSEKAIAQGKQDPCPLHTKWLKELKIV 299