Miyakogusa Predicted Gene
- Lj3g3v2057520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2057520.1 Non Characterized Hit- tr|I1M2M6|I1M2M6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.51756 PE,31.03,5e-18,K
homology RNA-binding domain,K Homology domain; no description,NULL;
KH_1,K Homology domain, type 1,CUFF.43531.1
(418 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 540 e-154
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 213 4e-55
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 203 2e-52
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 203 2e-52
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 196 5e-50
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 181 1e-45
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 181 1e-45
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 181 1e-45
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 181 1e-45
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 176 5e-44
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 164 1e-40
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 164 1e-40
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 161 1e-39
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 153 2e-37
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 152 5e-37
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 145 6e-35
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 84 3e-16
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 84 3e-16
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 82 1e-15
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 81 2e-15
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 80 3e-15
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 80 3e-15
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 79 9e-15
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 79 9e-15
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 78 2e-14
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 78 2e-14
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 78 2e-14
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 78 2e-14
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 67 3e-11
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 67 3e-11
Medtr5g008420.1 | RNA-binding KH domain protein | HC | chr5:1773... 60 4e-09
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803... 53 4e-07
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804... 52 1e-06
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 52 1e-06
Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-3153788... 52 1e-06
Medtr5g049770.1 | RNA-binding KH domain protein | HC | chr5:2176... 51 2e-06
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 296/421 (70%), Positives = 330/421 (78%), Gaps = 34/421 (8%)
Query: 3 SNNNNKRRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVNIHVDDFGG----GDDRLVT 58
SNNN +R HVPP P+TVFRILCPAA K+ LL L+GDGV I +DDF G D+R+V
Sbjct: 2 SNNNKRRYHVPPTQPDTVFRILCPAA-KSDSLLSLSGDGVKILIDDFAGDVTSSDERIVV 60
Query: 59 IVGAAEHPASCGGDESPARLALIRVFERMVEEESTTSNSA-----VACTLVAPSYQVGSI 113
I+ AA +ES A+LALIRVFER+VE+++ N+ V C L+APSYQVG +
Sbjct: 61 IISAAA-------EESAAQLALIRVFERIVEKDNNEENNKKSNSSVGCRLLAPSYQVGCV 113
Query: 114 LGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDH 173
LGRGGK EKIRQESGAQVR+LPKD P+P PGDEFIQITGNFN VKKALL+VSSCL D
Sbjct: 114 LGRGGKIVEKIRQESGAQVRILPKDHSPIPPPGDEFIQITGNFNAVKKALLAVSSCLQD- 172
Query: 174 ARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHHPRGYSPFPGPESAG 233
+ NSG F SG AQ EPYPQRG P+ PDHH RGYS FPG E+A
Sbjct: 173 ---NVGNSGGFKSSGG---------AQVEPYPQRG----PHPPDHHSRGYSSFPGSENAR 216
Query: 234 PSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI 293
P+HRMFVEEEVV+K+LCQQDKVGSLIGKGGS VRALQNETGASIQIV+AGPDSDERV+VI
Sbjct: 217 PAHRMFVEEEVVYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVI 276
Query: 294 STRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEM 353
S ENSDQKHSPAQ+A+ RVH RLTEIGFE SNAV ARLLVRSPQVG LLGKGGHVISEM
Sbjct: 277 SALENSDQKHSPAQDAVIRVHGRLTEIGFEHSNAVVARLLVRSPQVGCLLGKGGHVISEM 336
Query: 354 RRATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLKTPPPNF 413
RR TGA+IRIFSKEQIKYI NEEVVQV GTLQSV+DALFHITS+IRE I P+K PPNF
Sbjct: 337 RRVTGANIRIFSKEQIKYISHNEEVVQVIGTLQSVQDALFHITSRIRETIIPMKNTPPNF 396
Query: 414 G 414
G
Sbjct: 397 G 397
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 155/477 (32%), Positives = 251/477 (52%), Gaps = 78/477 (16%)
Query: 5 NNNKRRHVPPAPPE---------TVFRILCPAAAKTADLLGLAGD---------GVNIHV 46
N + +R P PP+ FR+LC +++ ++G +G G I +
Sbjct: 25 NGSSKRAKPSKPPQQPLPIPAGHVAFRLLC-NSSRIGGVIGKSGTVIKNLQLTTGAKIRI 83
Query: 47 DDF-GGGDDRLVTIVGAAEHPA-----SCGGD-----ESPARLALIRVFERMVE-----E 90
+D DR++ ++GA+ S GD S A+ AL+RVF+R++E E
Sbjct: 84 EDSPNESPDRVIMVIGASNIDGKVMVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEME 143
Query: 91 ESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDEFI 150
+ V+C LVA S Q GS++G+GGK EKI++++G ++ V + P S DE I
Sbjct: 144 GIELGDRTVSCRLVADSAQAGSVIGKGGKVVEKIKKDTGCKIWVCKDNLPACISSPDEVI 203
Query: 151 QITGNFNVVKKALLSVSSCLLD--HA---RMDAENSGAFVPSGPGIG----HGMAPPAQ- 200
+I G+ + VKKAL++VS L D HA +M +NS + +G M+ P +
Sbjct: 204 EIEGSVSSVKKALVAVSRNLQDRHHADRTKMTGQNSHEVIHHEALVGVPRETLMSVPRET 263
Query: 201 --GEPYPQRGYAPGPYGPDHH-------PRGYSPFPGPESAGPS--HRMFVE-------- 241
G P P D H S P ++ + H + E
Sbjct: 264 FIGAPRETLTAVPCETLTDLHVDHLLQRRSALSILPSSSNSYATGVHSLSAEVNRVSSLE 323
Query: 242 -----EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTR 296
+E+ FK++C D++G +IGKGG+ +RALQ+ETGA++ + + + ++R+I I+
Sbjct: 324 PKAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITAS 383
Query: 297 ENSDQKHSPAQEALFRVHCRLTEIGFEQ--------SNAVTARLLVRSPQVGFLLGKGGH 348
E+ + ++SPAQ+A V R E G E+ ++VTA+L+V S QVG LLGKGG
Sbjct: 384 ESPESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGV 443
Query: 349 VISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIF 404
++SEMR+ATGASIRI +++ K N++VVQ++G +V+DAL++ T ++R+ +F
Sbjct: 444 IVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLF 500
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 216/376 (57%), Gaps = 11/376 (2%)
Query: 47 DDFGGGDDRLVTIVGAAEHPASCGGDESPARL-ALIRVFERMVEEE--STTSNSAVACTL 103
++ G GDD + E S + +P + A++ VFER+ E+E + L
Sbjct: 110 EEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLVFERVAEDEGGDESKKGYFGLRL 169
Query: 104 VAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKA 162
+ S QVG ILG+GG +++ ESGAQ+R+LPK++ P S DE +QITG VV++A
Sbjct: 170 LILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRA 229
Query: 163 LLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHHPRG 222
L SV L++++ D E+ + +G PP + + +G A GP+ P
Sbjct: 230 LQSVFQQLVENSPRDHESLPTNLTGPSSHSYGQFPPNK-RTFAGQG-ASFATGPNEIPVF 287
Query: 223 YSP--FPGPESAGPSHRMFVEEEVV-FKLLCQQDKVGSLIGKGGSGVRALQNETGASIQI 279
+S P RM E++ F+LLC + VG+LIGKGGS ++ LQ ET + I++
Sbjct: 288 HSAPMIPKFHEGAILGRMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKV 347
Query: 280 VEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFE-QSNAVTARLLVRSPQ 338
+EA P S++ +I+IS + D + SP QEA+FRV R++ + + +++ AR++V S
Sbjct: 348 IEAIPGSEDCIIIISGPAHPDDRISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKH 407
Query: 339 VGFLLGKGGHVISEMRRATGASIRIFSKEQ-IKYIPQNEEVVQVTGTLQSVRDALFHITS 397
+G LLGKGG +I+EMR +GA IR+ K++ K + +++EV+QV+G +++V DAL IT+
Sbjct: 408 IGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITT 467
Query: 398 KIREIIFPLKTPPPNF 413
++R F P NF
Sbjct: 468 RLRNNFFRDAFPSANF 483
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 25/227 (11%)
Query: 16 PPETV-FRILCPAAAKTADLLGLAGDGVNIH----------VDDFGGGDDRLVTIVGAAE 64
PPE + FR+LCP+ + +L+G G + + ++ G +D ++ I G A
Sbjct: 308 PPEILTFRLLCPSES-VGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPA- 365
Query: 65 HPASCGGDESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKI 124
HP SP + A+ RV R+ + ++ ++ S +G +LG+GG ++
Sbjct: 366 HPDD---RISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGSIIAEM 422
Query: 125 RQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDAENSGA 183
R SGA +R+L KD+ P S DE IQ++G V ALL +++ L ++ DA S
Sbjct: 423 RNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAFPSAN 482
Query: 184 FVPSGPGI--GHGMAPPAQGEPYPQRGYAPGPYGPDHHPRG-YSPFP 227
F PS H PP G +RG +P D PR ++ FP
Sbjct: 483 F-PSNSAFLDQHSPFPPYLG----RRGLSPPGMYSDLGPRHPHADFP 524
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 50/212 (23%)
Query: 240 VEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIV------- 292
V VVF+LLC K+G +IGKGGS + +++ETG ++I E P +ERVI
Sbjct: 28 VSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESEE 87
Query: 293 --------ISTRENSDQKHSPAQE-------------------------------ALFRV 313
++ + S+ K +E A+ V
Sbjct: 88 GSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLV 147
Query: 314 HCRLTEI-GFEQSNA--VTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQIK 370
R+ E G ++S RLL+ S QVG +LGKGG VI M +GA IRI KE+I
Sbjct: 148 FERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIP 207
Query: 371 YIPQN-EEVVQVTGTLQSVRDALFHITSKIRE 401
+ +E+VQ+TG ++ VR AL + ++ E
Sbjct: 208 ACASDSDELVQITGGVEVVRRALQSVFQQLVE 239
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 216/376 (57%), Gaps = 11/376 (2%)
Query: 47 DDFGGGDDRLVTIVGAAEHPASCGGDESPARL-ALIRVFERMVEEE--STTSNSAVACTL 103
++ G GDD + E S + +P + A++ VFER+ E+E + L
Sbjct: 110 EEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLVFERVAEDEGGDESKKGYFGLRL 169
Query: 104 VAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKA 162
+ S QVG ILG+GG +++ ESGAQ+R+LPK++ P S DE +QITG VV++A
Sbjct: 170 LILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRA 229
Query: 163 LLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHHPRG 222
L SV L++++ D E+ + +G PP + + +G A GP+ P
Sbjct: 230 LQSVFQQLVENSPRDHESLPTNLTGPSSHSYGQFPPNK-RTFAGQG-ASFATGPNEIPVF 287
Query: 223 YSP--FPGPESAGPSHRMFVEEEVV-FKLLCQQDKVGSLIGKGGSGVRALQNETGASIQI 279
+S P RM E++ F+LLC + VG+LIGKGGS ++ LQ ET + I++
Sbjct: 288 HSAPMIPKFHEGAILGRMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKV 347
Query: 280 VEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFE-QSNAVTARLLVRSPQ 338
+EA P S++ +I+IS + D + SP QEA+FRV R++ + + +++ AR++V S
Sbjct: 348 IEAIPGSEDCIIIISGPAHPDDRISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKH 407
Query: 339 VGFLLGKGGHVISEMRRATGASIRIFSKEQ-IKYIPQNEEVVQVTGTLQSVRDALFHITS 397
+G LLGKGG +I+EMR +GA IR+ K++ K + +++EV+QV+G +++V DAL IT+
Sbjct: 408 IGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITT 467
Query: 398 KIREIIFPLKTPPPNF 413
++R F P NF
Sbjct: 468 RLRNNFFRDAFPSANF 483
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 25/227 (11%)
Query: 16 PPETV-FRILCPAAAKTADLLGLAGDGVNIH----------VDDFGGGDDRLVTIVGAAE 64
PPE + FR+LCP+ + +L+G G + + ++ G +D ++ I G A
Sbjct: 308 PPEILTFRLLCPSES-VGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPA- 365
Query: 65 HPASCGGDESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKI 124
HP SP + A+ RV R+ + ++ ++ S +G +LG+GG ++
Sbjct: 366 HPDD---RISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGSIIAEM 422
Query: 125 RQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDAENSGA 183
R SGA +R+L KD+ P S DE IQ++G V ALL +++ L ++ DA S
Sbjct: 423 RNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAFPSAN 482
Query: 184 FVPSGPGI--GHGMAPPAQGEPYPQRGYAPGPYGPDHHPRG-YSPFP 227
F PS H PP G +RG +P D PR ++ FP
Sbjct: 483 F-PSNSAFLDQHSPFPPYLG----RRGLSPPGMYSDLGPRHPHADFP 524
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 50/212 (23%)
Query: 240 VEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIV------- 292
V VVF+LLC K+G +IGKGGS + +++ETG ++I E P +ERVI
Sbjct: 28 VSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESEE 87
Query: 293 --------ISTRENSDQKHSPAQE-------------------------------ALFRV 313
++ + S+ K +E A+ V
Sbjct: 88 GSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLV 147
Query: 314 HCRLTEI-GFEQSNA--VTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQIK 370
R+ E G ++S RLL+ S QVG +LGKGG VI M +GA IRI KE+I
Sbjct: 148 FERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIP 207
Query: 371 YIPQN-EEVVQVTGTLQSVRDALFHITSKIRE 401
+ +E+VQ+TG ++ VR AL + ++ E
Sbjct: 208 ACASDSDELVQITGGVEVVRRALQSVFQQLVE 239
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 225/422 (53%), Gaps = 44/422 (10%)
Query: 20 VFRILCPAAAKTADLLGLAGD---------GVNIHVDDF-GGGDDRLVTIVGAAEHPASC 69
VFR+LC A++ +G +G G I +DD +R++ ++ +
Sbjct: 21 VFRLLC-HASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVI------VNL 73
Query: 70 GGDESPA---RLALIRVFERMVEEESTTSNS------AVACTLVAPSYQVGSILGRGGKF 120
GD + + AL++VFER+++ + S+ V+C L+ + Q G ++G+GG
Sbjct: 74 NGDGDVSLNPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMV 133
Query: 121 AEKIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL-----LDHAR 175
KIR ++G ++RVL P P DE I+I G + VKKAL++V+ L LD +
Sbjct: 134 VAKIRADTGCRIRVLNDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQDCPPLDRTK 193
Query: 176 MDAEN-SGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHH--PRGYSPFPGPESA 232
M AF + H + QR A + P P ++
Sbjct: 194 MMGTRPYEAFQNETSAVPHEGLTDLNMDFRLQRSSAISTSSIRSNGVPSKSHPLSVEDNR 253
Query: 233 GPSHR-MFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVI 291
S +++EV F++LC D++G+++GKGGS V+ALQNETGA+I + + ++R+I
Sbjct: 254 VSSLDPEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVECEDRLI 313
Query: 292 VISTRENSDQKHSPAQEALFRVHCRLTEIGFE--------QSNAVTARLLVRSPQVGFLL 343
I+ EN + + SPAQEA+ V CR E E + ++VTA+L+V S QVG LL
Sbjct: 314 TITALENPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLL 373
Query: 344 GKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREI 402
GKGG ++SEMR+AT SIRI ++ K N++VVQ++G L +VRDAL++ T ++R+
Sbjct: 374 GKGGAIVSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDH 433
Query: 403 IF 404
IF
Sbjct: 434 IF 435
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 8/166 (4%)
Query: 244 VVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKH 303
VVF+LLC ++G+ IGK GS +++LQ TGA I+I +A D ERVIV+ N D
Sbjct: 20 VVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDGDV 79
Query: 304 SPA-QEALFRVHCRLTEIGFEQSN-------AVTARLLVRSPQVGFLLGKGGHVISEMRR 355
S QEAL +V R+ ++ +S+ V+ RLLV + Q G ++GKGG V++++R
Sbjct: 80 SLNPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAKIRA 139
Query: 356 ATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIRE 401
TG IR+ + + ++E++++ G SV+ AL + ++++
Sbjct: 140 DTGCRIRVLNDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQD 185
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 62/333 (18%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVNIHVDDFGGG----------DDRLVTIVGAAEHPA 67
E FRILC + + +LG G V ++ G +DRL+TI A E+P
Sbjct: 265 EVTFRILC-SGDRIGAVLGKGGSIVKALQNETGANISVGPPVVECEDRLITIT-ALENPE 322
Query: 68 SCGGDESPARLALIRVFERMVE-------EESTTSNSAVACTLVAPSYQVGSILGRGGKF 120
S SPA+ A++ VF R +E + + S+V LV PS QVG +LG+GG
Sbjct: 323 S---RFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGGAI 379
Query: 121 AEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDAE 179
++R+ + +R+ + P S D+ +QI+G V+ AL + + L DH + A+
Sbjct: 380 VSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLIAQ 439
Query: 180 NSGAF---------VPSGPG----IGHGMAPPAQGEPYPQ----------RGYAPGPYGP 216
NSG +P G G +G P R + G + P
Sbjct: 440 NSGGTGPYRRPRDSIPLGLGGQSVVGSNHGPSIHSLSQSMDHLTLSRNSGRSASSGVWAP 499
Query: 217 -----------DHHPRGYSPFPGP-ESAGPSHRMFVEEEVV----FKLLCQQDKVGSLIG 260
D R +P G E A S+ + ++ +++ D +GS+ G
Sbjct: 500 KVVGGKNSRYTDDAGRRLNPREGDLELASGSNTVIGNAAIITNTTVEIMLPNDIIGSVYG 559
Query: 261 KGGSGVRALQNETGASIQIVEAGPDSDERVIVI 293
+ GS + L+ +GA + E P + +R ++
Sbjct: 560 ENGSNLDQLRQISGAKVVFHEPRPGTSDRAKIV 592
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 223/420 (53%), Gaps = 29/420 (6%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVN-IHVDDFG---------GGDDRLVTIVGAAEHPA 67
+TVFR LCP K ++G G+ V + V+ G D+R+VT+ +++
Sbjct: 46 DTVFRYLCPGR-KIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 68 SCG-GDE--SPARLALIRVFERMVEEESTTSNS-----AVACTLVAPSYQVGSILGRGGK 119
+ GD+ SPA AL ++ +R+V E+ + V L+ PS Q+G +LG+GG+
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 120 FAEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDA 178
+ +R E+GAQ+R+L D P DE +QI+G+ VVKKAL ++S L +
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQ 224
Query: 179 ENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP--GPYGPDHHPRGYSPFPGPESAGPSH 236
G+ VPS G + P G P G AP GPYG G P P + P
Sbjct: 225 HLLGSAVPSVYPSGGSLMGPTAGPPIV--GMAPLVGPYGGYKSDTGDWP-PRSMYSAPRD 281
Query: 237 RMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTR 296
+ +E +L+C +G +IGKGG + ++ ++GA+I+ V++ D+ +I IST+
Sbjct: 282 EISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIK-VDSSAKGDDCLITISTK 340
Query: 297 ENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV--TARLLVRSPQVGFLLGKGGHVISEMR 354
E ++ SP EA + R +E S + T RLLV S ++G L+GKGG +I+EMR
Sbjct: 341 EFFEETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 355 RATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLKTPPPNF 413
R T ++IRI SKE + K ++E+VQ++G L +DAL + +++R +F + P F
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 14/173 (8%)
Query: 241 EEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI------- 293
+E+ VF+ LC K+GS+IG+GG V+ L+ ET A I+I E P DERV+ +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 294 STRENSDQKHSPAQEALFRVHCRLT--EIGFEQSN----AVTARLLVRSPQVGFLLGKGG 347
+T ++ D+ SPA++ALF++H R+ ++ +Q V A+LLV S Q+G +LGKGG
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGG 163
Query: 348 HVISEMRRATGASIRIFSKEQIKYIP-QNEEVVQVTGTLQSVRDALFHITSKI 399
++ +R TGA IRI + + +++E+VQ++G V+ AL I S++
Sbjct: 164 QIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 223/420 (53%), Gaps = 29/420 (6%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVN-IHVDDFG---------GGDDRLVTIVGAAEHPA 67
+TVFR LCP K ++G G+ V + V+ G D+R+VT+ +++
Sbjct: 46 DTVFRYLCPGR-KIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 68 SCG-GDE--SPARLALIRVFERMVEEESTTSNS-----AVACTLVAPSYQVGSILGRGGK 119
+ GD+ SPA AL ++ +R+V E+ + V L+ PS Q+G +LG+GG+
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 120 FAEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDA 178
+ +R E+GAQ+R+L D P DE +QI+G+ VVKKAL ++S L +
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQ 224
Query: 179 ENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP--GPYGPDHHPRGYSPFPGPESAGPSH 236
G+ VPS G + P G P G AP GPYG G P P + P
Sbjct: 225 HLLGSAVPSVYPSGGSLMGPTAGPPIV--GMAPLVGPYGGYKSDTGDWP-PRSMYSAPRD 281
Query: 237 RMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTR 296
+ +E +L+C +G +IGKGG + ++ ++GA+I+ V++ D+ +I IST+
Sbjct: 282 EISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIK-VDSSAKGDDCLITISTK 340
Query: 297 ENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV--TARLLVRSPQVGFLLGKGGHVISEMR 354
E ++ SP EA + R +E S + T RLLV S ++G L+GKGG +I+EMR
Sbjct: 341 EFFEETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 355 RATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLKTPPPNF 413
R T ++IRI SKE + K ++E+VQ++G L +DAL + +++R +F + P F
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 14/173 (8%)
Query: 241 EEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI------- 293
+E+ VF+ LC K+GS+IG+GG V+ L+ ET A I+I E P DERV+ +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 294 STRENSDQKHSPAQEALFRVHCRLT--EIGFEQSN----AVTARLLVRSPQVGFLLGKGG 347
+T ++ D+ SPA++ALF++H R+ ++ +Q V A+LLV S Q+G +LGKGG
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGG 163
Query: 348 HVISEMRRATGASIRIFSKEQIKYIP-QNEEVVQVTGTLQSVRDALFHITSKI 399
++ +R TGA IRI + + +++E+VQ++G V+ AL I S++
Sbjct: 164 QIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 223/420 (53%), Gaps = 29/420 (6%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVN-IHVDDFG---------GGDDRLVTIVGAAEHPA 67
+TVFR LCP K ++G G+ V + V+ G D+R+VT+ +++
Sbjct: 46 DTVFRYLCPGR-KIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 68 SCG-GDE--SPARLALIRVFERMVEEESTTSNS-----AVACTLVAPSYQVGSILGRGGK 119
+ GD+ SPA AL ++ +R+V E+ + V L+ PS Q+G +LG+GG+
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 120 FAEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDA 178
+ +R E+GAQ+R+L D P DE +QI+G+ VVKKAL ++S L +
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQ 224
Query: 179 ENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP--GPYGPDHHPRGYSPFPGPESAGPSH 236
G+ VPS G + P G P G AP GPYG G P P + P
Sbjct: 225 HLLGSAVPSVYPSGGSLMGPTAGPPIV--GMAPLVGPYGGYKSDTGDWP-PRSMYSAPRD 281
Query: 237 RMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTR 296
+ +E +L+C +G +IGKGG + ++ ++GA+I+ V++ D+ +I IST+
Sbjct: 282 EISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIK-VDSSAKGDDCLITISTK 340
Query: 297 ENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV--TARLLVRSPQVGFLLGKGGHVISEMR 354
E ++ SP EA + R +E S + T RLLV S ++G L+GKGG +I+EMR
Sbjct: 341 EFFEETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 355 RATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLKTPPPNF 413
R T ++IRI SKE + K ++E+VQ++G L +DAL + +++R +F + P F
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 14/173 (8%)
Query: 241 EEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI------- 293
+E+ VF+ LC K+GS+IG+GG V+ L+ ET A I+I E P DERV+ +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 294 STRENSDQKHSPAQEALFRVHCRLT--EIGFEQSN----AVTARLLVRSPQVGFLLGKGG 347
+T ++ D+ SPA++ALF++H R+ ++ +Q V A+LLV S Q+G +LGKGG
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGG 163
Query: 348 HVISEMRRATGASIRIFSKEQIKYIP-QNEEVVQVTGTLQSVRDALFHITSKI 399
++ +R TGA IRI + + +++E+VQ++G V+ AL I S++
Sbjct: 164 QIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 142/434 (32%), Positives = 227/434 (52%), Gaps = 29/434 (6%)
Query: 4 NNNNKRRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVN-IHVDDFG---------GGD 53
+++ R +TVFR LCP K ++G G+ V + V+ G D
Sbjct: 32 DHDRDREQFVINKEDTVFRYLCPGR-KIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCD 90
Query: 54 DRLVTIVGAAEHPASCG-GDE--SPARLALIRVFERMVEEESTTSNS-----AVACTLVA 105
+R+VT+ +++ + GD+ SPA AL ++ +R+V E+ + V L+
Sbjct: 91 ERVVTVYSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLV 150
Query: 106 PSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALL 164
PS Q+G +LG+GG+ + +R E+GAQ+R+L D P DE +QI+G+ VVKKAL
Sbjct: 151 PSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALH 210
Query: 165 SVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP--GPYGPDHHPRG 222
++S L + G+ VPS G + P G P G AP GPYG G
Sbjct: 211 QIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIV--GMAPLVGPYGGYKSDTG 268
Query: 223 YSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEA 282
P P + P + +E +L+C +G +IGKGG + ++ ++GA+I+ V++
Sbjct: 269 DWP-PRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIK-VDS 326
Query: 283 GPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV--TARLLVRSPQVG 340
D+ +I IST+E ++ SP EA + R +E S + T RLLV S ++G
Sbjct: 327 SAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIG 386
Query: 341 FLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKI 399
L+GKGG +I+EMRR T ++IRI SKE + K ++E+VQ++G L +DAL + +++
Sbjct: 387 CLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRL 446
Query: 400 REIIFPLKTPPPNF 413
R +F + P F
Sbjct: 447 RANLFDREGAVPGF 460
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 208/430 (48%), Gaps = 47/430 (10%)
Query: 5 NNNKRRHVPPAPPETVFRILCPAAAKTADLLGLAGD---------GVNIHVDD-FGGGDD 54
NN KR P + FR++C ++ L+G +G G IH +D G DD
Sbjct: 25 NNRKRPVFKLLPGQIAFRLVCHSST-VGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDD 83
Query: 55 RLVTIVGA-AEHPASCGGDE----SPARLALIRVFERMVEEESTTS-NSAVACTLVAPSY 108
R++ ++G+ ++ GD S A+ ++RVF+R+ ES N V L+A S
Sbjct: 84 RVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYGKLLAHSS 143
Query: 109 QVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSS 168
QVG+I+G+GGK IR SG+ +RV P P + +E I ITG VKKAL+ VS
Sbjct: 144 QVGAIVGKGGKNISNIRNNSGSNIRVCPA--PHCAAKDEELILITGESLAVKKALIYVSY 201
Query: 169 CLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQ-RGYAPGPYG--------PDHH 219
CL D M + P + +P + P G +
Sbjct: 202 CLQDCPPMGKVSLNT--PPTINSSDRSTSYTHEDLFPHLNSWLPSMEGLSINDASKQTTN 259
Query: 220 PRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQI 279
G S +S G H VVF+LLC + GS+IGK GS VR + TGASI
Sbjct: 260 ANGNSSL---DSKGSGH------AVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASIVF 310
Query: 280 VEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEI----GFEQSNA----VTAR 331
+ER++ IS EN + +SPAQ+A+ V R+ E GF+ + A VTAR
Sbjct: 311 APPLGQYEERIVTISAFENLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTAR 370
Query: 332 LLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDA 391
LL+ + + L G G VISE+R+ +GA I++ E I N+ VVQ+TG + V +A
Sbjct: 371 LLITTSTLHLLTGNEGQVISELRQVSGADIQLLHGEPIPNASDNDVVVQITGGYRCVENA 430
Query: 392 LFHITSKIRE 401
L ITS IR+
Sbjct: 431 LRKITSIIRD 440
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 17/183 (9%)
Query: 243 EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI----STRE- 297
++ F+L+C VG LIG GS V L+ ETG I +A +D+RVI++ S R+
Sbjct: 38 QIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKG 97
Query: 298 ----NSDQKHSPAQEALFRVHCRLTEIGFEQ--SNAVTARLLVRSPQVGFLLGKGGHVIS 351
+ + + S AQE + RV R+ + E+ + V +LL S QVG ++GKGG IS
Sbjct: 98 IVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYGKLLAHSSQVGAIVGKGGKNIS 157
Query: 352 EMRRATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIREI----IFPLK 407
+R +G++IR+ ++EE++ +TG +V+ AL +++ +++ L
Sbjct: 158 NIRNNSGSNIRVCPAPHCA--AKDEELILITGESLAVKKALIYVSYCLQDCPPMGKVSLN 215
Query: 408 TPP 410
TPP
Sbjct: 216 TPP 218
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 20 VFRILCPAAAKTADLLGLAGDGVN----------IHVDDFGGGDDRLVTIVGAAEHPASC 69
VFR+LC ++G G V + G ++R+VTI A E+ S
Sbjct: 276 VFRLLCSNNV-AGSVIGKKGSIVRTFEIRTGASIVFAPPLGQYEERIVTI-SAFENLES- 332
Query: 70 GGDESPARLALIRVFERMVEEE-------STTSNSAVACTLVAPSYQVGSILGRGGKFAE 122
SPA+ A+I VF R+ E+ +T S V L+ + + + G G+
Sbjct: 333 --SNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVIS 390
Query: 123 KIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDH 173
++RQ SGA +++L + P S D +QITG + V+ AL ++S + D+
Sbjct: 391 ELRQVSGADIQLLHGEPIPNASDNDVVVQITGGYRCVENALRKITSIIRDN 441
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 224/447 (50%), Gaps = 58/447 (12%)
Query: 5 NNNKRRH--VPPAPP---------ETVFRILCPAAAKTADLLGLAGDGVN-IHVDDFG-- 50
NNKRR+ P +TV+R LCP K ++G G+ V + +D
Sbjct: 24 TNNKRRNPNTDETTPRDTFHITQDDTVYRYLCPVR-KIGSIIGRGGEIVKQLRLDTKAKI 82
Query: 51 -------GGDDRLVTIVGAAEHP---ASCGGDESPARLALIRVFERMVEE---------- 90
G D+R+VT+ ++ G PA AL+R+ ++++ E
Sbjct: 83 RIGETVPGCDERVVTVYSVSDESNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDV 142
Query: 91 --ESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLPS-PGD 147
E V L+ S Q+G ++G+GG+ + IR E+GAQ+R+L D+ PL + D
Sbjct: 143 DMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSD 202
Query: 148 EFIQITGNFNVVKKALLSVSSCLLDHAR-----MDAENSGAFVPSGPGIG-HGMAPPAQG 201
E +QI+G VVKKAL+ V++ L D+ + + G + SG +G HG AP
Sbjct: 203 ELVQISGEIAVVKKALIQVAARLHDNPSRTQHLLTSAVPGVYAASGSMVGSHGGAPIMGM 262
Query: 202 EPYPQRGYAPGPYGPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGK 261
P D+ PR S +PG G +E + +C +G +IGK
Sbjct: 263 APIGGGYGGYKGDVVDY-PR--SMYPGSRDEGSV------KEFSVRFVCPTANIGGVIGK 313
Query: 262 GGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIG 321
GG + ++ ++GA+I++ + + D+ +I IS RE + S EA + R +E
Sbjct: 314 GGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSE-K 372
Query: 322 FEQSNAV---TARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEE 377
E+ + + T+RLLV S ++G L+GKGG +I+EMRR T A+IRI SKE + K +++E
Sbjct: 373 VERDSGILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDE 432
Query: 378 VVQVTGTLQSVRDALFHITSKIREIIF 404
+VQ++G L +DAL + +++R +F
Sbjct: 433 MVQISGELDIAKDALLQVLTRLRANLF 459
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 224/447 (50%), Gaps = 58/447 (12%)
Query: 5 NNNKRRH--VPPAPP---------ETVFRILCPAAAKTADLLGLAGDGVN-IHVDDFG-- 50
NNKRR+ P +TV+R LCP K ++G G+ V + +D
Sbjct: 24 TNNKRRNPNTDETTPRDTFHITQDDTVYRYLCPVR-KIGSIIGRGGEIVKQLRLDTKAKI 82
Query: 51 -------GGDDRLVTIVGAAEHP---ASCGGDESPARLALIRVFERMVEE---------- 90
G D+R+VT+ ++ G PA AL+R+ ++++ E
Sbjct: 83 RIGETVPGCDERVVTVYSVSDESNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDV 142
Query: 91 --ESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLPS-PGD 147
E V L+ S Q+G ++G+GG+ + IR E+GAQ+R+L D+ PL + D
Sbjct: 143 DMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSD 202
Query: 148 EFIQITGNFNVVKKALLSVSSCLLDHAR-----MDAENSGAFVPSGPGIG-HGMAPPAQG 201
E +QI+G VVKKAL+ V++ L D+ + + G + SG +G HG AP
Sbjct: 203 ELVQISGEIAVVKKALIQVAARLHDNPSRTQHLLTSAVPGVYAASGSMVGSHGGAPIMGM 262
Query: 202 EPYPQRGYAPGPYGPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGK 261
P D+ PR S +PG G +E + +C +G +IGK
Sbjct: 263 APIGGGYGGYKGDVVDY-PR--SMYPGSRDEGSV------KEFSVRFVCPTANIGGVIGK 313
Query: 262 GGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIG 321
GG + ++ ++GA+I++ + + D+ +I IS RE + S EA + R +E
Sbjct: 314 GGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSE-K 372
Query: 322 FEQSNAV---TARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEE 377
E+ + + T+RLLV S ++G L+GKGG +I+EMRR T A+IRI SKE + K +++E
Sbjct: 373 VERDSGILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDE 432
Query: 378 VVQVTGTLQSVRDALFHITSKIREIIF 404
+VQ++G L +DAL + +++R +F
Sbjct: 433 MVQISGELDIAKDALLQVLTRLRANLF 459
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/401 (33%), Positives = 209/401 (52%), Gaps = 29/401 (7%)
Query: 4 NNNNKRRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVN-IHVDDFG---------GGD 53
+++ R +TVFR LCP K ++G G+ V + V+ G D
Sbjct: 32 DHDRDREQFVINKEDTVFRYLCPGR-KIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCD 90
Query: 54 DRLVTIVGAAEHPASCG-GDE--SPARLALIRVFERMVEEESTTSNSA-----VACTLVA 105
+R+VT+ +++ + GD+ SPA AL ++ +R+V E+ + V L+
Sbjct: 91 ERVVTVYSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLV 150
Query: 106 PSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALL 164
PS Q+G +LG+GG+ + +R E+GAQ+R+L D P DE +QI+G+ VVKKAL
Sbjct: 151 PSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALH 210
Query: 165 SVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP--GPYGPDHHPRG 222
++S L + G+ VPS G + P G P G AP GPYG G
Sbjct: 211 QIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIV--GMAPLVGPYGGYKSDTG 268
Query: 223 YSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEA 282
P P + P + +E +L+C +G +IGKGG + ++ ++GA+I+ V++
Sbjct: 269 DWP-PRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIK-VDS 326
Query: 283 GPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV--TARLLVRSPQVG 340
D+ +I IST+E ++ SP EA + R +E S + T RLLV S ++G
Sbjct: 327 SAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIG 386
Query: 341 FLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQ 380
L+GKGG +I+EMRR T ++IRI SKE + K ++E+VQ
Sbjct: 387 CLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQ 427
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 14/173 (8%)
Query: 241 EEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI------- 293
+E+ VF+ LC K+GS+IG+GG V+ L+ ET A I+I E P DERV+ +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 294 STRENSDQKHSPAQEALFRVHCRLT--EIGFEQSN----AVTARLLVRSPQVGFLLGKGG 347
+T ++ D+ SPA++ALF++H R+ ++ +Q V A+LLV S Q+G +LGKGG
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGG 163
Query: 348 HVISEMRRATGASIRIFSKEQIKYIP-QNEEVVQVTGTLQSVRDALFHITSKI 399
++ +R TGA IRI + + +++E+VQ++G V+ AL I S++
Sbjct: 164 QIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/453 (25%), Positives = 207/453 (45%), Gaps = 56/453 (12%)
Query: 14 PAPPETVFRILC----------PAAAKTADLLGLAGDGVNIHVDDFGGGDDRLVTIVGAA 63
P T +R+LC + + + G +N+H + G ++R++ I
Sbjct: 58 PLTVTTSYRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVH-EPVAGDEERIIEISDTR 116
Query: 64 EH-PASCGGDESPARLALIRVFERMVEEE------------STTSNSAVACTLVAPSYQV 110
P SPA+ AL+ + ER++E + V+ LV V
Sbjct: 117 RRDPDGRMPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHV 176
Query: 111 GSILGRGGKFAEKIRQESGAQVRVLPKDQ--PPLPSPGDEFIQITGNFNVVKKALLSVSS 168
GS+LG+GGK E++R E+ Q+R+LP+D P S +E +Q+TG+ + VK A L +SS
Sbjct: 177 GSLLGKGGKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISS 236
Query: 169 CLLDHARMDAENSGA----------------FVPSGPGIGH----GMAPPAQGEPYPQRG 208
L + D F P + H P + + R
Sbjct: 237 RLRESQHRDRSGERGGGGGQFHGRGHSPERFFPPDDDYLPHVSSGSRRPSVERSGFGSRI 296
Query: 209 YAPGPYGPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRA 268
+H YS G + F E+ ++F++LC D+V ++G+ G +
Sbjct: 297 ATTNSRNNNHASISYSMDQGAAPVAHDEQPFYED-LIFRILCPVDRVDRIVGESGGILEL 355
Query: 269 LQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV 328
LQ+ G +QI + SDE++++I++ E + PAQEAL + + ++ + +
Sbjct: 356 LQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTMFPAQEALLHIQTHIVDLS---DSII 412
Query: 329 TARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQS 387
T RL+V S + L GK +SE+ R+TGAS++I +E++ I +E+VQ+ G +++
Sbjct: 413 TTRLIVPSSDIECLDGKNAS-LSEIERSTGASVQILPREELPPCIANTDELVQIVGEIEA 471
Query: 388 VRDALFHITSKIREIIF----PLKTPPPNFGVP 416
R+ + +T+K+R ++ T PP+ +P
Sbjct: 472 ARNVILDVTAKLRSYVYRDILQWDTVPPSAPLP 504
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/464 (27%), Positives = 208/464 (44%), Gaps = 72/464 (15%)
Query: 4 NNNNKRRHVPPAPPE-----TVFRILCPAAAKTADLLGLAGDGVNIH----------VDD 48
+N N++R V +RILCP ++G G +N VD
Sbjct: 22 DNKNQKRRVNDRDERDKGELIAYRILCPNEV-IGSVIGKNGKVINSIRQESRAKVKVVDP 80
Query: 49 FGGGDDRLVTIVGAAEHPASCGG-----DESP---ARLALIRVFERMVEEESTTSNSAVA 100
F G R++TI ++ +E P A+ ALI+V + T +S
Sbjct: 81 FPGAKHRVITIFCHVKNKEEIEIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKK 140
Query: 101 ------CTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKD----QPPLPSPGDEFI 150
C ++ PS Q ++G+ G +++R ++ ++V+PKD + D F+
Sbjct: 141 RKNKDECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFV 200
Query: 151 QITGNFNVVKKALLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYA 210
ITG VK+AL +VS+ + + + VP P H + P++ YP G
Sbjct: 201 LITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTVPETP---HSIIIPSELPIYPPGGLY 257
Query: 211 PGPYGPDHHPRGY---------------------------SPFPGPESAGPSHRMFVEEE 243
P P PR + SP P S G S EE
Sbjct: 258 PAS-DPIVQPRSFPQLIGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLGASQ----SEE 312
Query: 244 VVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKH 303
++ ++LC DK+G LIGKGG ++ ++ +GA I++ ++ DE +I I+ E++
Sbjct: 313 LIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLK 372
Query: 304 SPAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRI 363
S A EA+ + ++ + E V+ RLLV S +G ++G+ G +I+E+R+ T A I+I
Sbjct: 373 SVAVEAVLLLQEKIND---EDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQI 429
Query: 364 FSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLK 407
+ KY N+E+V+V G + VRDAL I ++RE + K
Sbjct: 430 SRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNK 473
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 126/463 (27%), Positives = 207/463 (44%), Gaps = 71/463 (15%)
Query: 4 NNNNKRRHVPPAPPE-----TVFRILCPAAAKTADLLGLAGDGVNIH----------VDD 48
+N N++R V +RILCP ++G G +N VD
Sbjct: 22 DNKNQKRRVNDRDERDKGELIAYRILCPNEV-IGSVIGKNGKVINSIRQESRAKVKVVDP 80
Query: 49 FGGGDDRLVTIVGAAEHPASCGG-----DESP---ARLALIRVFERMVEEESTTSNSAVA 100
F G R++TI ++ +E P A+ ALI+V + T +S
Sbjct: 81 FPGAKHRVITIFCHVKNKEEIEIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKK 140
Query: 101 ------CTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQP-PLPSPGDEF--IQ 151
C ++ PS Q ++G+ G +++R ++ ++V+PKD P S EF
Sbjct: 141 RKNKDECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFV 200
Query: 152 ITGNFNVVKKALLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP 211
+ G VK+AL +VS+ + + + VP P H + P++ YP G P
Sbjct: 201 LVGESEAVKRALFAVSTIMYKFSPKEDIPLDTTVPETP---HSIIIPSELPIYPPGGLYP 257
Query: 212 GPYGPDHHPRGY---------------------------SPFPGPESAGPSHRMFVEEEV 244
P PR + SP P S G S EE+
Sbjct: 258 AS-DPIVQPRSFPQLIGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLGASQ----SEEL 312
Query: 245 VFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHS 304
+ ++LC DK+G LIGKGG ++ ++ +GA I++ ++ DE +I I+ E++ S
Sbjct: 313 IVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKS 372
Query: 305 PAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIF 364
A EA+ + ++ + E V+ RLLV S +G ++G+ G +I+E+R+ T A I+I
Sbjct: 373 VAVEAVLLLQEKIND---EDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQIS 429
Query: 365 SKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLK 407
+ KY N+E+V+V G + VRDAL I ++RE + K
Sbjct: 430 RSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNK 472
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 42/310 (13%)
Query: 18 ETVFRILCPAAAKTADLLGLAG---------DGVNIHVDDFGGGDDRLVTIVGAAEHPAS 68
E + R+LCP+ K L+G G G I VDD D + + A E +
Sbjct: 311 ELIVRMLCPSD-KIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSD 369
Query: 69 CGGDESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQES 128
+S A A++ + E++ +E+ ++ V+ L+ PS +G I+GR G +IR+ +
Sbjct: 370 L---KSVAVEAVLLLQEKINDED----DAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRT 422
Query: 129 GAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL---------LDHARMDAE 179
A +++ ++P DE +++ G + V+ AL+ + L +DH R
Sbjct: 423 KADIQISRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHNRHIGS 482
Query: 180 NS---GAFVPSGPGIGHGMAPPAQGEPYPQR---GYAPGPYGPDHHPRGYSPFPGPESAG 233
S + V S P + + A Y QR G G + H GY + ++
Sbjct: 483 ESLYASSSVLSAPPMLSSIPATAPALAYDQRTGSGTGLGMHSSRSH-YGYDSYSMEDNGY 541
Query: 234 PSHRMFVEEEV---------VFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGP 284
S + +++ + VG ++GKGG+ + ++ +GA+++I E+
Sbjct: 542 GSMSSYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKS 601
Query: 285 DSDERVIVIS 294
+RV +IS
Sbjct: 602 YRGDRVALIS 611
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 18/190 (9%)
Query: 243 EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK 302
+ VF+L+ KVG +IG+ G ++ L +ET A +++++A +R+I+IS +E +
Sbjct: 69 DCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILISGKEELEAA 128
Query: 303 HSPAQEALFRVHCRLTEIGFEQSNA----------VTARLLVRSPQVGFLLGKGGHVISE 352
SPA +A+ R+ R++ G ++++ + RLLV S Q L+GK G +I
Sbjct: 129 ISPAMDAVIRIFKRVS--GLSETDSENKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRS 186
Query: 353 MRRATGASIRIFSKEQIKYIPQNEE-VVQVTGTLQSVRDALFHITSKIREI-----IFPL 406
++ ++GAS+R+ S ++++Y EE +V + G V AL + +R+ I P+
Sbjct: 187 IQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLVDHSILPV 246
Query: 407 KTPPPNFGVP 416
N +P
Sbjct: 247 YEKTYNASLP 256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 10 RHVPPAPPETVFRILCPAAAKTADLLGLAGDGVNIHVDDFG----------GGDDRLVTI 59
+ P P + VFR++ P K ++G GD + D+ G DR++ I
Sbjct: 61 QRWPGWPGDCVFRLIVPVG-KVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILI 119
Query: 60 VGAAEHPASCGGDESPARLALIRVFERMVEEESTTSNS-----AVACT--LVAPSYQVGS 112
G E A+ SPA A+IR+F+R+ T S + C+ L+ S Q S
Sbjct: 120 SGKEELEAAI----SPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAIS 175
Query: 113 ILGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDE-FIQITGNFNVVKKALLSV----S 167
++G+ G I++ SGA VRVL D+ + +E + + G +V KAL +V
Sbjct: 176 LIGKQGTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLR 235
Query: 168 SCLLDHA 174
L+DH+
Sbjct: 236 KFLVDHS 242
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 10/187 (5%)
Query: 227 PGPESAGPSHRMFVEE--EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGP 284
PG +S G + + E VF++L KVGS+IG+ G ++ + ET A ++I++
Sbjct: 146 PGEDSKGIEIKKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQ 205
Query: 285 DSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV-------TARLLVRSP 337
+ ER +++S +E D+ PA E L RVH ++ + E ++ RLLV
Sbjct: 206 GTAERAVMVSAKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADT 265
Query: 338 QVGFLLGKGGHVISEMRRATGASIRIFSKEQIK-YIPQNEEVVQVTGTLQSVRDALFHIT 396
Q G L+GK G I + +TG +IRI E + + +++ +V++ G V A+ I
Sbjct: 266 QAGSLIGKQGSTIKIFQDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIA 325
Query: 397 SKIREII 403
+R+ +
Sbjct: 326 LHLRKFL 332
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 243 EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK 302
E VF++L KVG +IG+ G ++ + ET A ++I++ P + ER +++S ++
Sbjct: 46 ESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSS 105
Query: 303 HSPAQEALFRVHCRLTEIGFEQ----SNAVTARLLVRSPQVGFLLGKGGHVISEMRRATG 358
PA + L + H RL + G + + V+ + LV + Q G L+GK G + ++ A+
Sbjct: 106 LPPAVDGLLKAHKRLID-GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASN 164
Query: 359 ASIRIFSKEQIK-YIPQNEEVVQVTGTLQSVRDALFHITSKIREII 403
+R+ E + + Q++ VV+V G V A+ I S +++ +
Sbjct: 165 CIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFL 210
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 9 RRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVN---------IHVDDFGGGDDRLVTI 59
+ P P E+VFR+L PA K ++G G+ + + + D G +
Sbjct: 37 EKKWPGWPGESVFRMLVPAQ-KVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVM 95
Query: 60 VGAAEHPASCGGDESPARLALIRVFERMVEEESTTSNSA--VACTLVAPSYQVGSILGRG 117
V A + P G PA L++ +R+++ S A V+ + P+ Q GS++G+
Sbjct: 96 VSAKDEP---GSSLPPAVDGLLKAHKRLIDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQ 152
Query: 118 GKFAEKIRQESGAQVRVL-PKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL 170
G + I++ S VRVL +D P D +++ G+ V KA+ ++S L
Sbjct: 153 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHL 206
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 243 EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK 302
E VF++L KVG +IG+ G ++ + ET A ++I++ P + ER +++S ++
Sbjct: 114 ESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSS 173
Query: 303 HSPAQEALFRVHCRLTEIGFEQ----SNAVTARLLVRSPQVGFLLGKGGHVISEMRRATG 358
PA + L + H RL + G + + V+ + LV + Q G L+GK G + ++ A+
Sbjct: 174 LPPAVDGLLKAHKRLID-GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASN 232
Query: 359 ASIRIFSKEQIK-YIPQNEEVVQVTGTLQSVRDALFHITSKIREII 403
+R+ E + + Q++ VV+V G V A+ I S +++ +
Sbjct: 233 CIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFL 278
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 9 RRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVN---------IHVDDFGGGDDRLVTI 59
+ P P E+VFR+L PA K ++G G+ + + + D G +
Sbjct: 105 EKKWPGWPGESVFRMLVPAQ-KVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVM 163
Query: 60 VGAAEHPASCGGDESPARLALIRVFERMVEEESTTSNSA--VACTLVAPSYQVGSILGRG 117
V A + P G PA L++ +R+++ S A V+ + P+ Q GS++G+
Sbjct: 164 VSAKDEP---GSSLPPAVDGLLKAHKRLIDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQ 220
Query: 118 GKFAEKIRQESGAQVRVL-PKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL 170
G + I++ S VRVL +D P D +++ G+ V KA+ ++S L
Sbjct: 221 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHL 274
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 11/188 (5%)
Query: 227 PGPESAGPSHRMFVEE--EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGP 284
PG +S G + + E VF++L KVGS+IG+ G ++ + ET A ++I++
Sbjct: 146 PGEDSKGIEIKKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQ 205
Query: 285 DSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV-------TARLLVRSP 337
+ ER +++S +E D+ PA E L RVH ++ + E ++ RLLV
Sbjct: 206 GTAERAVMVSAKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADT 265
Query: 338 QVGFLLGKGGHVISEMRRATGASIRIF-SKEQIK-YIPQNEEVVQVTGTLQSVRDALFHI 395
Q G L+GK G I + +TG +IRI S E + + +++ +V++ G V A+ I
Sbjct: 266 QAGSLIGKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELI 325
Query: 396 TSKIREII 403
+R+ +
Sbjct: 326 ALHLRKFL 333
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 11/188 (5%)
Query: 227 PGPESAGPSHRMFVEE--EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGP 284
PG +S G + + E VF++L KVGS+IG+ G ++ + ET A ++I++
Sbjct: 146 PGEDSKGIEIKKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQ 205
Query: 285 DSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV-------TARLLVRSP 337
+ ER +++S +E D+ PA E L RVH ++ + E ++ RLLV
Sbjct: 206 GTAERAVMVSAKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADT 265
Query: 338 QVGFLLGKGGHVISEMRRATGASIRIF-SKEQIK-YIPQNEEVVQVTGTLQSVRDALFHI 395
Q G L+GK G I + +TG +IRI S E + + +++ +V++ G V A+ I
Sbjct: 266 QAGSLIGKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELI 325
Query: 396 TSKIREII 403
+R+ +
Sbjct: 326 ALHLRKFL 333
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 99/173 (57%), Gaps = 14/173 (8%)
Query: 242 EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQ 301
++V+F+++ ++G +IGK G ++ ++ T A+I+I +A +ERVI+IS+++N D+
Sbjct: 98 QDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DE 156
Query: 302 KHSPAQEALFRVHCRLTE---IGFEQSN-------AVTARLLVRSPQVGFLLGKGGHVIS 351
+ A++AL ++ + + F+ S A T RLL+ Q G L+G G I
Sbjct: 157 MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIE 216
Query: 352 EMRRATGASIRIFSKEQIKYIP---QNEEVVQVTGTLQSVRDALFHITSKIRE 401
++R ++GA I + + Q+ +++ VVQ++G + +V AL I ++RE
Sbjct: 217 KLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 99/173 (57%), Gaps = 14/173 (8%)
Query: 242 EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQ 301
++V+F+++ ++G +IGK G ++ ++ T A+I+I +A +ERVI+IS+++N D+
Sbjct: 98 QDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DE 156
Query: 302 KHSPAQEALFRVHCRLTE---IGFEQSN-------AVTARLLVRSPQVGFLLGKGGHVIS 351
+ A++AL ++ + + F+ S A T RLL+ Q G L+G G I
Sbjct: 157 MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIE 216
Query: 352 EMRRATGASIRIFSKEQIKYIP---QNEEVVQVTGTLQSVRDALFHITSKIRE 401
++R ++GA I + + Q+ +++ VVQ++G + +V AL I ++RE
Sbjct: 217 KLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 99/173 (57%), Gaps = 14/173 (8%)
Query: 242 EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQ 301
++V+F+++ ++G +IGK G ++ ++ T A+I+I +A +ERVI+IS+++N D+
Sbjct: 98 QDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DE 156
Query: 302 KHSPAQEALFRVHCRLTE---IGFEQSN-------AVTARLLVRSPQVGFLLGKGGHVIS 351
+ A++AL ++ + + F+ S A T RLL+ Q G L+G G I
Sbjct: 157 MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIE 216
Query: 352 EMRRATGASIRIFSKEQIKYIP---QNEEVVQVTGTLQSVRDALFHITSKIRE 401
++R ++GA I + + Q+ +++ VVQ++G + +V AL I ++RE
Sbjct: 217 KLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 99/173 (57%), Gaps = 14/173 (8%)
Query: 242 EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQ 301
++V+F+++ ++G +IGK G ++ ++ T A+I+I +A +ERVI+IS+++N D+
Sbjct: 98 QDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DE 156
Query: 302 KHSPAQEALFRVHCRLTE---IGFEQSN-------AVTARLLVRSPQVGFLLGKGGHVIS 351
+ A++AL ++ + + F+ S A T RLL+ Q G L+G G I
Sbjct: 157 MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIE 216
Query: 352 EMRRATGASIRIFSKEQIKYIP---QNEEVVQVTGTLQSVRDALFHITSKIRE 401
++R ++GA I + + Q+ +++ VVQ++G + +V AL I ++RE
Sbjct: 217 KLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 99/173 (57%), Gaps = 14/173 (8%)
Query: 242 EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQ 301
++V+F+++ ++G +IGK G ++ ++ T A+I+I +A +ERVI+IS+++N D+
Sbjct: 98 QDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DE 156
Query: 302 KHSPAQEALFRVHCRLTE---IGFEQSN-------AVTARLLVRSPQVGFLLGKGGHVIS 351
+ A++AL ++ + + F+ S A T RLL+ Q G L+G G I
Sbjct: 157 MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIE 216
Query: 352 EMRRATGASIRIFSKEQIKYIP---QNEEVVQVTGTLQSVRDALFHITSKIRE 401
++R ++GA I + + Q+ +++ VVQ++G + +V AL I ++RE
Sbjct: 217 KLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 23/213 (10%)
Query: 200 QGEPYPQRGYAPGPYGPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLI 259
Q E Y A P + + +PG VF+L+ KVG +I
Sbjct: 14 QSESYTIFDAAANPTDESESEKRWPGWPG--------------HCVFRLIVPVVKVGIII 59
Query: 260 GKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTE 319
G+ G ++ ET A I++++A + +R+++IS +E+ + SPA +A+ R+ R++
Sbjct: 60 GRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPLSPAMDAILRIFKRVSG 119
Query: 320 IGFEQSNAVTA--------RLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-K 370
+ +N A RLLV S Q L+GK G I ++ TGA IR+ S +++
Sbjct: 120 LSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQENTGAVIRVLSGDELPS 179
Query: 371 YIPQNEEVVQVTGTLQSVRDALFHITSKIREII 403
Y +E ++ + G V AL + +R+ +
Sbjct: 180 YAGADERIIDLQGETLKVLKALEAVVGHLRKFL 212
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 23/182 (12%)
Query: 3 SNNNNKRRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVN---------IHVDDF-GGG 52
++ + + P P VFR++ P K ++G G+ + I V D G
Sbjct: 28 TDESESEKRWPGWPGHCVFRLIVPVV-KVGIIIGRKGELIKKTCEETHARIRVLDAPVGT 86
Query: 53 DDRLVTIVGAAEHPASCGGDESPARLALIRVFERMVEEESTTSNSAVA-----CT--LVA 105
DR+V I G + A SPA A++R+F+R+ T +N+ A C+ L+
Sbjct: 87 PDRIVLISGKEDLEAPL----SPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLV 142
Query: 106 PSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDE-FIQITGNFNVVKKALL 164
S Q +++G+ G + I++ +GA +RVL D+ P + DE I + G V KAL
Sbjct: 143 ASTQAINLIGKQGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALE 202
Query: 165 SV 166
+V
Sbjct: 203 AV 204
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 205 PQRGYAPGPYGPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGS 264
P+ Y P GP H + VE+ + L GS+IGKGGS
Sbjct: 4 PESSYVSSPEGPRKHAS-------SPPPDSPSQDSVEKPTYVRFLVSNSAAGSVIGKGGS 56
Query: 265 GVRALQNETGASIQIV---EAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIG 321
+ Q+++GA IQ+ E P + +R+I++S N + A E + L+E+
Sbjct: 57 TITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLR---AVELIL--SKLLSELH 111
Query: 322 FEQSNAV----TARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQIKYIPQNEE 377
E N V RL+V + G ++GKGG I + A I+I S + Y QN+
Sbjct: 112 SEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQAGIKI-SPQDNSYYGQNDR 170
Query: 378 VVQVTGTLQSVRDALFHITSKIRE 401
+V VTGTL + I SK+ E
Sbjct: 171 IVTVTGTLDEQMRGIDLIVSKLAE 194
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 205 PQRGYAPGPYGPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGS 264
P+ Y P GP H + VE+ + L GS+IGKGGS
Sbjct: 4 PESSYVSSPEGPRKHAS-------SPPPDSPSQDSVEKPTYVRFLVSNSAAGSVIGKGGS 56
Query: 265 GVRALQNETGASIQIV---EAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIG 321
+ Q+++GA IQ+ E P + +R+I++S N + A E + L+E+
Sbjct: 57 TITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLR---AVELIL--SKLLSELH 111
Query: 322 FEQSNAV----TARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQIKYIPQNEE 377
E N V RL+V + G ++GKGG I + A I+I S + Y QN+
Sbjct: 112 SEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQAGIKI-SPQDNSYYGQNDR 170
Query: 378 VVQVTGTLQSVRDALFHITSKIRE 401
+V VTGTL + I SK+ E
Sbjct: 171 IVTVTGTLDEQMRGIDLIVSKLAE 194
>Medtr5g008420.1 | RNA-binding KH domain protein | HC |
chr5:1773973-1764791 | 20130731
Length = 780
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 12/185 (6%)
Query: 231 SAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIV---EAGPDSD 287
S+G + + K+ +KVG LIGK G +R LQ +GA IQI +A P S
Sbjct: 172 SSGQKQPISGSDTTTRKIEVPSNKVGVLIGKSGDTIRYLQYNSGAKIQITRDADADPHSS 231
Query: 288 ER-VIVISTRENSDQKHSPAQEALFRVHC----RLTEIGFEQSNAVTA----RLLVRSPQ 338
R V +I T E+ D+ + L G + A+ ++ V + +
Sbjct: 232 TRPVELIGTLESIDKAEKLMNAVIAEADAGGSPALVARGLSPAQAIVGSDQIQIQVPNEK 291
Query: 339 VGFLLGKGGHVISEMRRATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSK 398
VG ++GKGG I ++ TGA I++ + + E VQVTG + + A I
Sbjct: 292 VGLIIGKGGETIKSLQTKTGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEIAQEMIKEV 351
Query: 399 IREII 403
+ + I
Sbjct: 352 LSQPI 356
>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
chr3:48031833-48027169 | 20130731
Length = 605
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 247 KLLCQQDKVGSLIGKGGSGVRALQNETGASIQI---VEAGPDSDERVI-VISTRENSDQK 302
K+ +VG LIGKGG ++ LQ ++GA IQ+ ++A P+S R++ ++ T +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSA 148
Query: 303 HSPAQEALFRVHCRLTEIG----FEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATG 358
E L + G QS + + + +VG ++GKGG I M+ +TG
Sbjct: 149 EKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTG 208
Query: 359 ASIRIF 364
A I++
Sbjct: 209 ARIQVI 214
>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
chr3:48040831-48036380 | 20130731
Length = 605
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 247 KLLCQQDKVGSLIGKGGSGVRALQNETGASIQI---VEAGPDSDERVI-VISTRENSDQK 302
K+ +VG LIGKGG ++ LQ ++GA IQ+ ++A P+S R++ ++ T +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSA 148
Query: 303 HSPAQEALFRVHCRLTEIG----FEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATG 358
E L + G QS + + + +VG ++GKGG I M+ +TG
Sbjct: 149 EKLINEVLAEAEAGASVGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKGMQASTG 208
Query: 359 ASIRIF 364
A I++
Sbjct: 209 ARIQVI 214
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 247 KLLCQQDKVGSLIGKGGSGVRALQNETGASIQI---VEAGPDSDERVIVISTRENSDQKH 303
K+ +VG +IGKGG ++ LQ ++GA IQ+ ++A P+S R++ ++ ++
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATA 174
Query: 304 SPAQEALFRVHCRLTEIGFE---------QSNAVTARLLVRSPQVGFLLGKGGHVISEMR 354
E L + E G Q A + + + +VG ++GKGG I M+
Sbjct: 175 ----EKLIKEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGETIKSMQ 230
Query: 355 RATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDA 391
TGA I++ E +++ GT + + A
Sbjct: 231 ATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESA 267
>Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-31537882 |
20130731
Length = 188
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 317 LTEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQN 375
LT+IG AV +V + +G L+GKGG +I+EMRR T ++IRI SKE + K +
Sbjct: 23 LTKIGHSMGKAV----IVAANMIGCLIGKGGSIITEMRRLTRSNIRILSKENLPKIASDD 78
Query: 376 EEVVQ 380
+E+VQ
Sbjct: 79 DEMVQ 83
>Medtr5g049770.1 | RNA-binding KH domain protein | HC |
chr5:21769759-21766560 | 20130731
Length = 241
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 105 APSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALL 164
A S QVG+I+G+GGK IR SG+ +RV P P + +E I ITG + ++ AL
Sbjct: 26 AHSSQVGAIVGKGGKNISNIRNNSGSNIRVCPA--PHCAAKDEELILITGGYRCIENALR 83
Query: 165 SVSSCLLDH 173
++S + ++
Sbjct: 84 KITSIIRNN 92