Miyakogusa Predicted Gene

Lj3g3v2042220.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2042220.4 Non Characterized Hit- tr|D8TQL3|D8TQL3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,45.83,3e-18,RRM_1,RNA recognition motif domain; RNA-BINDING
PROTEIN,NULL; seg,NULL; RNA recognition motif,RNA re,CUFF.43498.4
         (224 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g005900.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   281   5e-76
Medtr4g005900.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   271   3e-73
Medtr8g016140.1 | small nuclear ribonucleoprotein | HC | chr8:53...    52   5e-07

>Medtr4g005900.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:414085-418316 | 20130731
          Length = 319

 Score =  281 bits (718), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 150/217 (69%)

Query: 1   MGFALFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRL 60
           MGFALF+SPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLF+KRGIGADA AFDQSKRL
Sbjct: 75  MGFALFNSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFVKRGIGADAVAFDQSKRL 134

Query: 61  RTAGDYTHTGYVTXXXXXXXXXXXXXXHGYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RTAGDY HTGYVT              HGYM                             
Sbjct: 135 RTAGDYNHTGYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAP 194

Query: 121 XXXXXXQNTKDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEF 180
                 QNTKDNPPCNTLF            V+GLFSVQPGFKQMKI+RQERHTVCFIEF
Sbjct: 195 SSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEF 254

Query: 181 EDVNSAANVHHTLQGAVIPSSGSVGMRIQYPFLYFKK 217
           EDVNSA NVHH LQGAVIPSSGS+GMRIQYPFL + K
Sbjct: 255 EDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLYSK 291


>Medtr4g005900.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:414085-417175 | 20130731
          Length = 317

 Score =  271 bits (694), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/217 (65%), Positives = 148/217 (68%), Gaps = 2/217 (0%)

Query: 1   MGFALFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRL 60
           MGFALF+SPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLF+KRG  ADA AFDQSKRL
Sbjct: 75  MGFALFNSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFVKRG--ADAVAFDQSKRL 132

Query: 61  RTAGDYTHTGYVTXXXXXXXXXXXXXXHGYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RTAGDY HTGYVT              HGYM                             
Sbjct: 133 RTAGDYNHTGYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAP 192

Query: 121 XXXXXXQNTKDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEF 180
                 QNTKDNPPCNTLF            V+GLFSVQPGFKQMKI+RQERHTVCFIEF
Sbjct: 193 SSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEF 252

Query: 181 EDVNSAANVHHTLQGAVIPSSGSVGMRIQYPFLYFKK 217
           EDVNSA NVHH LQGAVIPSSGS+GMRIQYPFL + K
Sbjct: 253 EDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLYSK 289


>Medtr8g016140.1 | small nuclear ribonucleoprotein | HC |
           chr8:5394401-5388873 | 20130731
          Length = 268

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%)

Query: 134 PCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSAANVHHTL 193
           PC+TLF            +K   SV  GF  +K+  +    V F +FE+++ A  V   L
Sbjct: 183 PCSTLFIANLGPNCTEDELKQALSVYAGFNLVKMRSRGGMPVAFADFEEIDQAVKVMEEL 242

Query: 194 QGAVIPSSGSVGMRIQYPFLYFKK 217
           QG+ +PSS   GM I+Y     +K
Sbjct: 243 QGSSLPSSDRGGMHIEYARSRMRK 266