Miyakogusa Predicted Gene

Lj3g3v2038710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2038710.1 CUFF.43468.1
         (271 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g005390.1 | plastid lipid-associated protein | HC | chr4:2...   367   e-102

>Medtr4g005390.1 | plastid lipid-associated protein | HC |
           chr4:240407-236312 | 20130731
          Length = 272

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/242 (73%), Positives = 201/242 (83%)

Query: 30  KSFPRKMSLSMATAQAYDSELENKKLQLLTSIQDTQRGLLTTPDQRFSIEEALVNVEGCN 89
           KS    M+++ +  QAYDSELEN K +LLTS+QDTQRGLLTTP QR SIEEALVNVEG N
Sbjct: 31  KSKSISMAMASSVTQAYDSELENNKHELLTSVQDTQRGLLTTPHQRSSIEEALVNVEGSN 90

Query: 90  KGDPINLNKLDGTWRLQYTSASDVLVLFEAAARLPFFQVGQIFQKFECRDESNGGVIRNV 149
            GDPI+ NKLDGTWRLQYTSA DVL+LF+AAA LPFFQVGQIFQKFECR  SNGG+IRNV
Sbjct: 91  MGDPIDFNKLDGTWRLQYTSAPDVLILFQAAATLPFFQVGQIFQKFECRHISNGGIIRNV 150

Query: 150 VRWSVPNLLEEQDGATLLVSAKFTVVSVRNIYLQFQEITLQDININEXXXXXXXXXXXXR 209
           VRWS+PN LEEQ+GATL+VSAKFT+VSVRNIYLQFQEI++QDINI+E            R
Sbjct: 151 VRWSIPNFLEEQEGATLVVSAKFTLVSVRNIYLQFQEISVQDINISEQLQALISPAILPR 210

Query: 210 SYLSLQILQFLRAFKAQIPVRDPGRQSVGGLYYLSYLDDNMLLGRAXXXXXXXXXTRAQS 269
           S++SLQILQ+LRAFKAQ PVR+PGR+SVGGLYYLSYLDDNMLLGRA         TRAQS
Sbjct: 211 SFISLQILQYLRAFKAQFPVRNPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQS 270

Query: 270 LY 271
           LY
Sbjct: 271 LY 272