Miyakogusa Predicted Gene

Lj3g3v2037550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2037550.1 Non Characterized Hit- tr|B8AFU1|B8AFU1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,65.33,1e-17,Reticulon,Reticulon,CUFF.43462.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g005340.2 | reticulon-like protein B2 | HC | chr4:214379-2...   291   2e-79
Medtr4g005340.1 | reticulon-like protein B2 | HC | chr4:214412-2...   291   2e-79
Medtr4g005340.3 | reticulon-like protein B2 | HC | chr4:214412-2...   196   1e-50
Medtr6g012460.2 | reticulon-like protein B2 | HC | chr6:3786650-...    48   6e-06

>Medtr4g005340.2 | reticulon-like protein B2 | HC |
           chr4:214379-211486 | 20130731
          Length = 180

 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/163 (86%), Positives = 149/163 (91%)

Query: 20  EMGKAIIALVCGTLVYYHCAYRNSTVVSLFSDVFIVLLCSLAILGLLFRQMNIQVPVDPL 79
           E+GKAIIALVCGTLVYYHCA++NS +VSLFSDVFIVLLCSLAILGLLFRQM IQVPVDPL
Sbjct: 18  EIGKAIIALVCGTLVYYHCAFKNSAIVSLFSDVFIVLLCSLAILGLLFRQMTIQVPVDPL 77

Query: 80  EWQISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKVILCLYVLSAIGRLALGIT 139
           EWQISQDTAN IVA  ANTVGAAESVLRVAATGHDKRLFFKVILCLY LSA+GRLALGIT
Sbjct: 78  EWQISQDTANTIVASFANTVGAAESVLRVAATGHDKRLFFKVILCLYALSALGRLALGIT 137

Query: 140 IAYAGLCLFCLYMLAECSQSISSGVGWLVGRRNYASGEQDSIM 182
           IAYAGLCLFCLYM AECSQSISS + W +GRRN    EQD+IM
Sbjct: 138 IAYAGLCLFCLYMFAECSQSISSCLAWFLGRRNDTGEEQDTIM 180


>Medtr4g005340.1 | reticulon-like protein B2 | HC |
           chr4:214412-211784 | 20130731
          Length = 180

 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/163 (86%), Positives = 149/163 (91%)

Query: 20  EMGKAIIALVCGTLVYYHCAYRNSTVVSLFSDVFIVLLCSLAILGLLFRQMNIQVPVDPL 79
           E+GKAIIALVCGTLVYYHCA++NS +VSLFSDVFIVLLCSLAILGLLFRQM IQVPVDPL
Sbjct: 18  EIGKAIIALVCGTLVYYHCAFKNSAIVSLFSDVFIVLLCSLAILGLLFRQMTIQVPVDPL 77

Query: 80  EWQISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKVILCLYVLSAIGRLALGIT 139
           EWQISQDTAN IVA  ANTVGAAESVLRVAATGHDKRLFFKVILCLY LSA+GRLALGIT
Sbjct: 78  EWQISQDTANTIVASFANTVGAAESVLRVAATGHDKRLFFKVILCLYALSALGRLALGIT 137

Query: 140 IAYAGLCLFCLYMLAECSQSISSGVGWLVGRRNYASGEQDSIM 182
           IAYAGLCLFCLYM AECSQSISS + W +GRRN    EQD+IM
Sbjct: 138 IAYAGLCLFCLYMFAECSQSISSCLAWFLGRRNDTGEEQDTIM 180


>Medtr4g005340.3 | reticulon-like protein B2 | HC |
           chr4:214412-211784 | 20130731
          Length = 130

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 97/102 (95%)

Query: 20  EMGKAIIALVCGTLVYYHCAYRNSTVVSLFSDVFIVLLCSLAILGLLFRQMNIQVPVDPL 79
           E+GKAIIALVCGTLVYYHCA++NS +VSLFSDVFIVLLCSLAILGLLFRQM IQVPVDPL
Sbjct: 18  EIGKAIIALVCGTLVYYHCAFKNSAIVSLFSDVFIVLLCSLAILGLLFRQMTIQVPVDPL 77

Query: 80  EWQISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKV 121
           EWQISQDTAN IVA  ANTVGAAESVLRVAATGHDKRLFFKV
Sbjct: 78  EWQISQDTANTIVASFANTVGAAESVLRVAATGHDKRLFFKV 119


>Medtr6g012460.2 | reticulon-like protein B2 | HC |
           chr6:3786650-3782438 | 20130731
          Length = 228

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 71  NIQVPVDPLEWQISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKVILCLYVLSA 130
           N Q P  P E  +S++  N + A     +     +      G D R+FFKV++CL++LS 
Sbjct: 72  NKQPPTLP-ELVVSEEMVNNVAASFRVKINNVLLIAHDITVGKDFRIFFKVVVCLWLLSV 130

Query: 131 IGRLALGITIAYAGLCLFCLYMLAE 155
           IG +    T+AY G  +  +Y+LA 
Sbjct: 131 IGSIFSFFTLAYIGKFVSRIYLLAR 155