Miyakogusa Predicted Gene

Lj3g3v2004940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2004940.1 Non Characterized Hit- tr|D7U8E8|D7U8E8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.33,0.00000000001,zf-LSD1,Zinc finger, LSD1-type; FAMILY NOT
NAMED,NULL; seg,NULL; LSD1: zinc finger domain, LSD1 subc,CUFF.43519.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g098500.1 | LSD1-type zinc finger protein | HC | chr4:4058...   243   5e-65
Medtr4g098500.2 | LSD1-type zinc finger protein | HC | chr4:4058...   243   5e-65
Medtr4g098500.3 | LSD1-type zinc finger protein | HC | chr4:4058...   241   2e-64
Medtr8g089310.1 | LSD1-type zinc finger protein | HC | chr8:3710...   176   7e-45
Medtr8g089310.2 | LSD1-type zinc finger protein | HC | chr8:3710...   175   1e-44
Medtr8g089310.3 | LSD1-type zinc finger protein | HC | chr8:3710...   175   1e-44
Medtr2g047838.1 | LSD1-type zinc finger protein | HC | chr2:2090...   149   7e-37
Medtr4g088850.1 | LSD1-type zinc finger protein | HC | chr4:3545...    93   7e-20
Medtr4g088850.2 | LSD1-type zinc finger protein | HC | chr4:3545...    93   8e-20

>Medtr4g098500.1 | LSD1-type zinc finger protein | HC |
           chr4:40586734-40583419 | 20130731
          Length = 154

 Score =  243 bits (620), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/127 (96%), Positives = 125/127 (98%), Gaps = 1/127 (0%)

Query: 20  NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
           NGAQSQLVCSGCRNLL+YPVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 28  NGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 87

Query: 80  ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTT 139
           ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG SASTT
Sbjct: 88  ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTT 147

Query: 140 E-QKFST 145
           E QKFST
Sbjct: 148 EPQKFST 154


>Medtr4g098500.2 | LSD1-type zinc finger protein | HC |
           chr4:40586719-40583419 | 20130731
          Length = 154

 Score =  243 bits (620), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/127 (96%), Positives = 125/127 (98%), Gaps = 1/127 (0%)

Query: 20  NGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRG 79
           NGAQSQLVCSGCRNLL+YPVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRG
Sbjct: 28  NGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 87

Query: 80  ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTT 139
           ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG SASTT
Sbjct: 88  ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTT 147

Query: 140 E-QKFST 145
           E QKFST
Sbjct: 148 EPQKFST 154


>Medtr4g098500.3 | LSD1-type zinc finger protein | HC |
           chr4:40586719-40583419 | 20130731
          Length = 128

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/126 (96%), Positives = 124/126 (98%), Gaps = 1/126 (0%)

Query: 21  GAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGA 80
           GAQSQLVCSGCRNLL+YPVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRGA
Sbjct: 3   GAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 62

Query: 81  TSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTTE 140
           TSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG SASTTE
Sbjct: 63  TSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTE 122

Query: 141 -QKFST 145
            QKFST
Sbjct: 123 PQKFST 128


>Medtr8g089310.1 | LSD1-type zinc finger protein | HC |
           chr8:37102205-37109257 | 20130731
          Length = 223

 Score =  176 bits (446), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 97/113 (85%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
           QSQLVC+GCRN L+YP GAT+VCCA+CN +T+VPPPG +M+QL CGGC TLLMY RGATS
Sbjct: 49  QSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGATS 108

Query: 83  VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135
           V+CSCCHTVNLA  +NQVAHV CGNCR  LMY YGA SVKCAVC+++T++  S
Sbjct: 109 VRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMS 161


>Medtr8g089310.2 | LSD1-type zinc finger protein | HC |
           chr8:37104096-37109257 | 20130731
          Length = 189

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 97/113 (85%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
           QSQLVC+GCRN L+YP GAT+VCCA+CN +T+VPPPG +M+QL CGGC TLLMY RGATS
Sbjct: 15  QSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGATS 74

Query: 83  VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135
           V+CSCCHTVNLA  +NQVAHV CGNCR  LMY YGA SVKCAVC+++T++  S
Sbjct: 75  VRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMS 127


>Medtr8g089310.3 | LSD1-type zinc finger protein | HC |
           chr8:37104112-37109257 | 20130731
          Length = 176

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 97/113 (85%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
           QSQLVC+GCRN L+YP GAT+VCCA+CN +T+VPPPG +M+QL CGGC TLLMY RGATS
Sbjct: 2   QSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGATS 61

Query: 83  VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135
           V+CSCCHTVNLA  +NQVAHV CGNCR  LMY YGA SVKCAVC+++T++  S
Sbjct: 62  VRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMS 114


>Medtr2g047838.1 | LSD1-type zinc finger protein | HC |
           chr2:20900056-20906924 | 20130731
          Length = 173

 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 94/114 (82%), Gaps = 3/114 (2%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSV-P--PPGTEMAQLVCGGCHTLLMYIRG 79
           +S ++C+GCRN+L+YP GA++VCCAVC+ +T V P  PPG EM+QL CGGC TLLM+ RG
Sbjct: 2   RSHIMCTGCRNILLYPRGASNVCCAVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHARG 61

Query: 80  ATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 133
           AT+V+CSCC+T+NL  ++NQ+ H+ CGNCR  LMY +GA SVKCAVC+++T+V 
Sbjct: 62  ATTVRCSCCNTINLVPDSNQMNHIRCGNCRTTLMYPHGAPSVKCAVCHYITNVD 115



 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 4/77 (5%)

Query: 63  AQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE----ANQVAHVNCGNCRMLLMYQYGA 118
           + ++C GC  +L+Y RGA++V C+ C T+   +       +++ + CG CR LLM+  GA
Sbjct: 3   SHIMCTGCRNILLYPRGASNVCCAVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHARGA 62

Query: 119 RSVKCAVCNFVTSVGTS 135
            +V+C+ CN +  V  S
Sbjct: 63  TTVRCSCCNTINLVPDS 79


>Medtr4g088850.1 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456672 | 20130731
          Length = 133

 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 51/74 (68%)

Query: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121
            AQ+VCG C  LL Y  GA  V+CSCC TVN+ LEA+QV  V CG+C +LLMY YGA  V
Sbjct: 40  FAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQV 99

Query: 122 KCAVCNFVTSVGTS 135
           +C+ C FVT +G  
Sbjct: 100 RCSSCRFVTEIGAD 113



 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 24  SQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
           +Q+VC  CR LL YP GA  V C+ C  V  V     ++ Q+ CG C  LLMY  GA  V
Sbjct: 41  AQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIV-LEADQVGQVKCGSCAVLLMYPYGAPQV 99

Query: 84  QCSCCHTV 91
           +CS C  V
Sbjct: 100 RCSSCRFV 107


>Medtr4g088850.2 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456687 | 20130731
          Length = 149

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 54/75 (72%)

Query: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121
            AQ+VCG C  LL Y  GA  V+CSCC TVN+ LEA+QV  V CG+C +LLMY YGA  V
Sbjct: 40  FAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQV 99

Query: 122 KCAVCNFVTSVGTSA 136
           +C+ C FVT +GT++
Sbjct: 100 RCSSCRFVTEIGTTS 114



 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 24  SQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
           +Q+VC  CR LL YP GA  V C+ C  V  V     ++ Q+ CG C  LLMY  GA  V
Sbjct: 41  AQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIV-LEADQVGQVKCGSCAVLLMYPYGAPQV 99

Query: 84  QCSCCHTV 91
           +CS C  V
Sbjct: 100 RCSSCRFV 107