Miyakogusa Predicted Gene

Lj3g3v2003920.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2003920.2 tr|D6WQ23|D6WQ23_TRICA Eyes absent OS=Tribolium
castaneum GN=clift PE=4 SV=1,32.93,2e-17,EYES ABSENT,NULL;
EYA-cons_domain: EYA conserved domain,EYA,CUFF.43517.2
         (176 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g098510.1 | eyes absent-like protein | HC | chr4:40602411-...   305   2e-83

>Medtr4g098510.1 | eyes absent-like protein | HC |
           chr4:40602411-40598430 | 20130731
          Length = 264

 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 161/180 (89%), Gaps = 4/180 (2%)

Query: 1   MAASSGRPEQDT----SNNTHPRLDVFVWDMDETLVLLNSLLKSSYAEAFNGLKDVQKGV 56
           M+A+SG  E++T     +N HPRLDV++WDMDETL+LLNSLLKSSYAEAFNGLKDVQKGV
Sbjct: 1   MSAASGTSEEETRVSSGDNIHPRLDVYIWDMDETLILLNSLLKSSYAEAFNGLKDVQKGV 60

Query: 57  ELGRMWENLILQLCDDYFFYEQIEDYNKPFLDALTQFDDGRDLSDYDFNQDELGAPNDDD 116
           ELG+MWENLILQLCDD+FFYEQIE YNKPFLD L+++DDG+DLSDYDFNQDELG P DD 
Sbjct: 61  ELGKMWENLILQLCDDHFFYEQIESYNKPFLDVLSKYDDGKDLSDYDFNQDELGPPLDDA 120

Query: 117 NKRKLAYRHRIIAQKYVQGLHNILDHEAIKFWNELYDKTDEYTDKWLSSARAFLKECSGE 176
           NKRKLAYRHRIIA+KY+QGLHNILD E IK WN LY+KTDEYTDKWLSSARA L ECSGE
Sbjct: 121 NKRKLAYRHRIIAEKYLQGLHNILDQETIKVWNNLYNKTDEYTDKWLSSARACLTECSGE 180