Miyakogusa Predicted Gene

Lj3g3v1981280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1981280.1 Non Characterized Hit- tr|H3DBX9|H3DBX9_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,39.76,2e-18,Smg4_UPF3,Regulator of nonsense-mediated decay,
UPF3; UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PR,CUFF.43387.1
         (535 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005510.1 | regulator of nonsense transcripts UPF3 protein...   771   0.0  
Medtr2g005600.3 | Smg-4/UPF3 family protein | HC | chr2:225129-2...   327   1e-89
Medtr2g005600.1 | Smg-4/UPF3 family protein | HC | chr2:225247-2...   327   1e-89
Medtr2g005600.2 | Smg-4/UPF3 family protein | HC | chr2:225129-2...   318   6e-87
Medtr2g005600.4 | Smg-4/UPF3 family protein | HC | chr2:225129-2...   318   6e-87

>Medtr3g005510.1 | regulator of nonsense transcripts UPF3 protein |
           HC | chr3:238569-230542 | 20130731
          Length = 540

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/543 (74%), Positives = 450/543 (82%), Gaps = 11/543 (2%)

Query: 1   MKVRSERERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGNTSHKHQRYSRAYI 60
           MK RSE+ RTKVVIRHLPPSLT SDLIQ IDN F+SRY+WF FR GNTS+++Q+Y+RAY+
Sbjct: 1   MKARSEKGRTKVVIRHLPPSLTESDLIQHIDNRFSSRYHWFVFRSGNTSYRNQKYARAYL 60

Query: 61  DFKHPNDVFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKKDGREGSIYKDPDY 120
           DF  P+DVFEFAEFF+GHVFVNEKG QHKA+VEYAPSQRVPK  TKKDGREG+IYKDPDY
Sbjct: 61  DFNSPDDVFEFAEFFNGHVFVNEKGVQHKAVVEYAPSQRVPKLSTKKDGREGTIYKDPDY 120

Query: 121 LEFLKLIAKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSGVQVSSA 180
           LEFLKLI+KP+EHLPSAEIQLER+EAEQAGA+KE P+VTPLM Y+RQKRA+ SG  VSSA
Sbjct: 121 LEFLKLISKPQEHLPSAEIQLERKEAEQAGASKEAPIVTPLMAYIRQKRAVDSGPLVSSA 180

Query: 181 ATKISRRARAALPGKPGSGNAKRGSEKKKYVQKDNAKIANRKELRDKSAFIAVPRREDQS 240
           AT++ RRAR A+ GKPG  N +RGSEKKKYVQKDN K ANRK+ +DKSAF  VPRRED S
Sbjct: 181 ATRVGRRAR-AMQGKPGPSNTRRGSEKKKYVQKDNVKNANRKDSKDKSAFTVVPRREDHS 239

Query: 241 AESSAKGTSEIET--------LHGIEGPISGIPLTSDSXXXXXXXXXXXQREIPNAAEGM 292
           +ESS KG  EI++        +HGIEG ISGIPLTSDS           QREIP A EGM
Sbjct: 240 SESSIKGVYEIDSSHVIDEFAVHGIEGSISGIPLTSDSGKKKILLLKGKQREIPKATEGM 299

Query: 293 VKQQNVQSGSSLVSTSAKQTQRREGSGRLIRSILQNNEPRQSQSASGTQPKIQILTSENG 352
           VKQQN QS +  + T+AKQ QRRE  GRLIRSIL NNE RQSQS S  Q KIQILTSENG
Sbjct: 300 VKQQNAQSANLPIPTTAKQNQRREAGGRLIRSILLNNESRQSQSTSTAQHKIQILTSENG 359

Query: 353 KRPPRPFISRSGLSDQVSSHDAGQVNSEGDSKRVSDEKFIKRDLHGSGSVSEKTERRTRN 412
           +RPPRPF SRSGLSDQVSSHDAG VNSEG+SKR  DEKF++RD HGSG + +KTERRTRN
Sbjct: 360 RRPPRPFGSRSGLSDQVSSHDAGHVNSEGESKRDLDEKFVRRDFHGSG-IGDKTERRTRN 418

Query: 413 KDRPDRGVWAPLRRSDVSHSGNEHPSSSWSQTTLSNPESVEGEVKESVPSGNRSPEFSAS 472
           KDRPDRGVWAPLRRSD SHS NE  SSS +Q+  SNPESVEGEVKE+  SGNRS EFSAS
Sbjct: 419 KDRPDRGVWAPLRRSDSSHSSNELSSSSLAQSAPSNPESVEGEVKENAYSGNRSGEFSAS 478

Query: 473 AVGRGSPSVENGSQRNFTRRGASYIVKDEGAVSLSEGKPSKKGVAGNSAHEKQVWVQKSS 532
           A GR SPSVENGSQR FTRRGA YIVKD+GAVS SEGK SKKGV GNS HEKQVWVQKSS
Sbjct: 479 AGGRSSPSVENGSQRIFTRRGAPYIVKDDGAVSSSEGKLSKKGV-GNSTHEKQVWVQKSS 537

Query: 533 SGS 535
           SG+
Sbjct: 538 SGT 540


>Medtr2g005600.3 | Smg-4/UPF3 family protein | HC |
           chr2:225129-230626 | 20130731
          Length = 510

 Score =  327 bits (839), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 227/547 (41%), Positives = 310/547 (56%), Gaps = 58/547 (10%)

Query: 8   ERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGN-TSHKHQRYSRAYIDFKHPN 66
           +RTKVVIRHLPP++T   L+  ID+ FA RYNWFSF P   TSH H   SRAYIDF  P+
Sbjct: 3   DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKITSHNHT--SRAYIDFNTPD 60

Query: 67  DVFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKK--DGREGSIYKDPDYLEFL 124
           DV +FA FF+GH+F+N+KG   K  VEYAPSQRVP   +KK  D R+G+I+KDPDYL+FL
Sbjct: 61  DVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFL 120

Query: 125 KLIAKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSG---VQVSSAA 181
           + IAKP E+LPSAEIQL++REA      K+ P+VTPLM++VR KRA  +G      S + 
Sbjct: 121 QQIAKPVENLPSAEIQLDKREA----VRKDIPIVTPLMDFVRHKRATKNGPRQQHRSLSN 176

Query: 182 TKISRRARAALPGKPGSGNAKRGSEKKK-----YVQKDNAKIANRKELRDKSAFIAVPRR 236
            K++RR+     G   S  ++RG  K +     YV +D  K +    ++DKS +I VPR+
Sbjct: 177 GKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSST---VQDKSTYILVPRQ 233

Query: 237 EDQSAESSAKGTSEIETLHGIEGPISGIPLTSDSXXXXXXXXXXXQREIPNA--AEGMVK 294
            DQ+  + +  T+  +     +   +GI  ++DS           +RE      ++ M +
Sbjct: 234 GDQNPSNKSSNTASSDGNQTFDE--NGIAGSNDSGKKKLLLLKGNERETITVSDSDSMSQ 291

Query: 295 QQNVQSGSSLVSTSAKQTQRREGSGRLIRSILQNNEPRQSQSA-SGTQPKIQILTSENGK 353
                + + L ST+ KQ QR EG GR+I+SIL N + RQSQS+ + ++ +IQ    E  K
Sbjct: 292 HHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKDFRQSQSSRAHSERQIQTSNLEREK 351

Query: 354 RPPRPFISRSGLSDQVSSHDAGQVNSEGDSKRVSDEKFIKRDLHGSGSVSEKTERRTRNK 413
           +  RP   +  L       D    N      R++        +HG    SE+ ERR R+K
Sbjct: 352 QSTRPVHVQLILKGT----DGAPEN------RIT--------VHGLHVSSERQERRFRHK 393

Query: 414 DRPDRGVWAPLRRSDVSHSGNEHPSSSWSQTTLSNPESVEG---EVKESVPSGNRSPEFS 470
           DRPDRGVW          S +     S S +  S  + +EG   E+K   PS  RS E  
Sbjct: 394 DRPDRGVWT---------SRSNGGGESLSSSASSQVDPLEGGHTELKHDTPSA-RSGEVK 443

Query: 471 ASAVGRGSPSVENGSQRNFTRRGASYIVKD-EGAVSLSEGK-PSKKGVAGNSAHEKQVWV 528
           +    R S S ENG  ++F RRG  Y VKD +G   LSEGK P K   +   ++EKQVWV
Sbjct: 444 SLGSFRASHSSENGFSKHFGRRGPIYGVKDVDGYSILSEGKHPRKSSTSAYGSNEKQVWV 503

Query: 529 QKSSSGS 535
           QK+SSG+
Sbjct: 504 QKASSGT 510


>Medtr2g005600.1 | Smg-4/UPF3 family protein | HC |
           chr2:225247-230505 | 20130731
          Length = 510

 Score =  327 bits (839), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 227/547 (41%), Positives = 310/547 (56%), Gaps = 58/547 (10%)

Query: 8   ERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGN-TSHKHQRYSRAYIDFKHPN 66
           +RTKVVIRHLPP++T   L+  ID+ FA RYNWFSF P   TSH H   SRAYIDF  P+
Sbjct: 3   DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKITSHNHT--SRAYIDFNTPD 60

Query: 67  DVFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKK--DGREGSIYKDPDYLEFL 124
           DV +FA FF+GH+F+N+KG   K  VEYAPSQRVP   +KK  D R+G+I+KDPDYL+FL
Sbjct: 61  DVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFL 120

Query: 125 KLIAKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSG---VQVSSAA 181
           + IAKP E+LPSAEIQL++REA      K+ P+VTPLM++VR KRA  +G      S + 
Sbjct: 121 QQIAKPVENLPSAEIQLDKREA----VRKDIPIVTPLMDFVRHKRATKNGPRQQHRSLSN 176

Query: 182 TKISRRARAALPGKPGSGNAKRGSEKKK-----YVQKDNAKIANRKELRDKSAFIAVPRR 236
            K++RR+     G   S  ++RG  K +     YV +D  K +    ++DKS +I VPR+
Sbjct: 177 GKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSST---VQDKSTYILVPRQ 233

Query: 237 EDQSAESSAKGTSEIETLHGIEGPISGIPLTSDSXXXXXXXXXXXQREIPNA--AEGMVK 294
            DQ+  + +  T+  +     +   +GI  ++DS           +RE      ++ M +
Sbjct: 234 GDQNPSNKSSNTASSDGNQTFDE--NGIAGSNDSGKKKLLLLKGNERETITVSDSDSMSQ 291

Query: 295 QQNVQSGSSLVSTSAKQTQRREGSGRLIRSILQNNEPRQSQSA-SGTQPKIQILTSENGK 353
                + + L ST+ KQ QR EG GR+I+SIL N + RQSQS+ + ++ +IQ    E  K
Sbjct: 292 HHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKDFRQSQSSRAHSERQIQTSNLEREK 351

Query: 354 RPPRPFISRSGLSDQVSSHDAGQVNSEGDSKRVSDEKFIKRDLHGSGSVSEKTERRTRNK 413
           +  RP   +  L       D    N      R++        +HG    SE+ ERR R+K
Sbjct: 352 QSTRPVHVQLILKGT----DGAPEN------RIT--------VHGLHVSSERQERRFRHK 393

Query: 414 DRPDRGVWAPLRRSDVSHSGNEHPSSSWSQTTLSNPESVEG---EVKESVPSGNRSPEFS 470
           DRPDRGVW          S +     S S +  S  + +EG   E+K   PS  RS E  
Sbjct: 394 DRPDRGVWT---------SRSNGGGESLSSSASSQVDPLEGGHTELKHDTPSA-RSGEVK 443

Query: 471 ASAVGRGSPSVENGSQRNFTRRGASYIVKD-EGAVSLSEGK-PSKKGVAGNSAHEKQVWV 528
           +    R S S ENG  ++F RRG  Y VKD +G   LSEGK P K   +   ++EKQVWV
Sbjct: 444 SLGSFRASHSSENGFSKHFGRRGPIYGVKDVDGYSILSEGKHPRKSSTSAYGSNEKQVWV 503

Query: 529 QKSSSGS 535
           QK+SSG+
Sbjct: 504 QKASSGT 510


>Medtr2g005600.2 | Smg-4/UPF3 family protein | HC |
           chr2:225129-230626 | 20130731
          Length = 540

 Score =  318 bits (816), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 312/577 (54%), Gaps = 88/577 (15%)

Query: 8   ERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGN-TSHKHQRYSRAYIDFKHPN 66
           +RTKVVIRHLPP++T   L+  ID+ FA RYNWFSF P   TSH H   SRAYIDF  P+
Sbjct: 3   DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKITSHNHT--SRAYIDFNTPD 60

Query: 67  DVFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKK--DGREGSIYKDPDYLEFL 124
           DV +FA FF+GH+F+N+KG   K  VEYAPSQRVP   +KK  D R+G+I+KDPDYL+FL
Sbjct: 61  DVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFL 120

Query: 125 KLIAKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSGVQV------- 177
           + IAKP E+LPSAEIQL++REA      K+ P+VTPLM++VR KRA  +G +V       
Sbjct: 121 QQIAKPVENLPSAEIQLDKREA----VRKDIPIVTPLMDFVRHKRATKNGPRVIFLIIRV 176

Query: 178 --------------------------SSAATKISRRARAALPGKPGSGNAKRGSEKKK-- 209
                                     S +  K++RR+     G   S  ++RG  K +  
Sbjct: 177 GSCMHSFLASHPFLAYFISVQQQQHRSLSNGKVTRRSLTTSNGSSTSAPSRRGYTKNRLS 236

Query: 210 ---YVQKDNAKIANRKELRDKSAFIAVPRREDQSAESSAKGTSEIETLHGIEGPISGIPL 266
              YV +D  K +    ++DKS +I VPR+ DQ+  + +  T+  +     +   +GI  
Sbjct: 237 TTMYVARDPGKSST---VQDKSTYILVPRQGDQNPSNKSSNTASSDGNQTFDE--NGIAG 291

Query: 267 TSDSXXXXXXXXXXXQREIPNA--AEGMVKQQNVQSGSSLVSTSAKQTQRREGSGRLIRS 324
           ++DS           +RE      ++ M +     + + L ST+ KQ QR EG GR+I+S
Sbjct: 292 SNDSGKKKLLLLKGNERETITVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKS 351

Query: 325 ILQNNEPRQSQSA-SGTQPKIQILTSENGKRPPRPFISRSGLSDQVSSHDAGQVNSEGDS 383
           IL N + RQSQS+ + ++ +IQ    E  K+  RP   +  L       D    N     
Sbjct: 352 ILTNKDFRQSQSSRAHSERQIQTSNLEREKQSTRPVHVQLILKGT----DGAPEN----- 402

Query: 384 KRVSDEKFIKRDLHGSGSVSEKTERRTRNKDRPDRGVWAPLRRSDVSHSGNEHPSSSWSQ 443
            R++        +HG    SE+ ERR R+KDRPDRGVW          S +     S S 
Sbjct: 403 -RIT--------VHGLHVSSERQERRFRHKDRPDRGVWT---------SRSNGGGESLSS 444

Query: 444 TTLSNPESVEG---EVKESVPSGNRSPEFSASAVGRGSPSVENGSQRNFTRRGASYIVKD 500
           +  S  + +EG   E+K   PS  RS E  +    R S S ENG  ++F RRG  Y VKD
Sbjct: 445 SASSQVDPLEGGHTELKHDTPSA-RSGEVKSLGSFRASHSSENGFSKHFGRRGPIYGVKD 503

Query: 501 -EGAVSLSEGK-PSKKGVAGNSAHEKQVWVQKSSSGS 535
            +G   LSEGK P K   +   ++EKQVWVQK+SSG+
Sbjct: 504 VDGYSILSEGKHPRKSSTSAYGSNEKQVWVQKASSGT 540


>Medtr2g005600.4 | Smg-4/UPF3 family protein | HC |
           chr2:225129-230626 | 20130731
          Length = 540

 Score =  318 bits (816), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 312/577 (54%), Gaps = 88/577 (15%)

Query: 8   ERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGN-TSHKHQRYSRAYIDFKHPN 66
           +RTKVVIRHLPP++T   L+  ID+ FA RYNWFSF P   TSH H   SRAYIDF  P+
Sbjct: 3   DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKITSHNHT--SRAYIDFNTPD 60

Query: 67  DVFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKK--DGREGSIYKDPDYLEFL 124
           DV +FA FF+GH+F+N+KG   K  VEYAPSQRVP   +KK  D R+G+I+KDPDYL+FL
Sbjct: 61  DVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFL 120

Query: 125 KLIAKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSGVQV------- 177
           + IAKP E+LPSAEIQL++REA      K+ P+VTPLM++VR KRA  +G +V       
Sbjct: 121 QQIAKPVENLPSAEIQLDKREA----VRKDIPIVTPLMDFVRHKRATKNGPRVIFLIIRV 176

Query: 178 --------------------------SSAATKISRRARAALPGKPGSGNAKRGSEKKK-- 209
                                     S +  K++RR+     G   S  ++RG  K +  
Sbjct: 177 GSCMHSFLASHPFLAYFISVQQQQHRSLSNGKVTRRSLTTSNGSSTSAPSRRGYTKNRLS 236

Query: 210 ---YVQKDNAKIANRKELRDKSAFIAVPRREDQSAESSAKGTSEIETLHGIEGPISGIPL 266
              YV +D  K +    ++DKS +I VPR+ DQ+  + +  T+  +     +   +GI  
Sbjct: 237 TTMYVARDPGKSST---VQDKSTYILVPRQGDQNPSNKSSNTASSDGNQTFDE--NGIAG 291

Query: 267 TSDSXXXXXXXXXXXQREIPNA--AEGMVKQQNVQSGSSLVSTSAKQTQRREGSGRLIRS 324
           ++DS           +RE      ++ M +     + + L ST+ KQ QR EG GR+I+S
Sbjct: 292 SNDSGKKKLLLLKGNERETITVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKS 351

Query: 325 ILQNNEPRQSQSA-SGTQPKIQILTSENGKRPPRPFISRSGLSDQVSSHDAGQVNSEGDS 383
           IL N + RQSQS+ + ++ +IQ    E  K+  RP   +  L       D    N     
Sbjct: 352 ILTNKDFRQSQSSRAHSERQIQTSNLEREKQSTRPVHVQLILKGT----DGAPEN----- 402

Query: 384 KRVSDEKFIKRDLHGSGSVSEKTERRTRNKDRPDRGVWAPLRRSDVSHSGNEHPSSSWSQ 443
            R++        +HG    SE+ ERR R+KDRPDRGVW          S +     S S 
Sbjct: 403 -RIT--------VHGLHVSSERQERRFRHKDRPDRGVWT---------SRSNGGGESLSS 444

Query: 444 TTLSNPESVEG---EVKESVPSGNRSPEFSASAVGRGSPSVENGSQRNFTRRGASYIVKD 500
           +  S  + +EG   E+K   PS  RS E  +    R S S ENG  ++F RRG  Y VKD
Sbjct: 445 SASSQVDPLEGGHTELKHDTPSA-RSGEVKSLGSFRASHSSENGFSKHFGRRGPIYGVKD 503

Query: 501 -EGAVSLSEGK-PSKKGVAGNSAHEKQVWVQKSSSGS 535
            +G   LSEGK P K   +   ++EKQVWVQK+SSG+
Sbjct: 504 VDGYSILSEGKHPRKSSTSAYGSNEKQVWVQKASSGT 540