Miyakogusa Predicted Gene
- Lj3g3v1981190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1981190.1 Non Characterized Hit- tr|I1KFY2|I1KFY2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50890 PE,93.54,0,no
description,Nucleotide-binding, alpha-beta plait; SPLICING FACTOR U2AF
LARGE SUBUNIT,NULL; RNA-BI,CUFF.43705.1
(600 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 763 0.0
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 755 0.0
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 726 0.0
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 687 0.0
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 686 0.0
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 679 0.0
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 679 0.0
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 653 0.0
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 530 e-150
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 519 e-147
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 507 e-143
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 499 e-141
Medtr1g041735.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 124 3e-28
Medtr1g041735.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 123 7e-28
Medtr1g041735.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 122 1e-27
Medtr1g041735.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 100 5e-21
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 67 3e-11
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 6e-11
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 65 3e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 64 5e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 64 6e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 64 6e-10
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 60 4e-09
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 59 1e-08
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 58 3e-08
Medtr4g083380.1 | DNA-damage-repair/toleration protein DRT111 | ... 57 4e-08
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 57 7e-08
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 57 7e-08
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr1g078210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 6e-06
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 6e-06
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/401 (92%), Positives = 381/401 (95%), Gaps = 1/401 (0%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPP SA+L GA+ V GQI GA+PAIPGMFPNMFPL T+Q+QPFSALPV+PVQAM
Sbjct: 223 TSGFDMAPPTSAIL-GATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAM 281
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGL PTANEQSVATFFSQVMA IGGNTAGPGDAVVNVYINHDKKFAF
Sbjct: 282 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAF 341
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAA LGPSQPNPNLNLG VGL+PG
Sbjct: 342 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPG 401
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
SAGGLDGPDRIFVGG+PYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 402 SAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
AVTDIACAALNGIKMGDKTLTVRRANQ NP QPKPEQESILMHAQQQIALQKLMLQPAL
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 521
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGK 559
VATKV+CLTHAVS DELK+DEDYEEILDDMRQECSKFG LVNVVIPRP PDGE PGVGK
Sbjct: 522 VATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGK 581
Query: 560 VFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQG 600
VFLEY DVDG+TKAR+GLNGRKFGGNQVIAVFY ENKFAQG
Sbjct: 582 VFLEYADVDGSTKARSGLNGRKFGGNQVIAVFYPENKFAQG 622
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/401 (91%), Positives = 379/401 (94%), Gaps = 3/401 (0%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPP SA+L GA+ V GQI GA+PAIPGMFPNMFPL T+Q PFSALPV+PVQAM
Sbjct: 223 TSGFDMAPPTSAIL-GATGVAGQITGASPAIPGMFPNMFPLPTNQ--PFSALPVLPVQAM 279
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGL PTANEQSVATFFSQVMA IGGNTAGPGDAVVNVYINHDKKFAF
Sbjct: 280 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAF 339
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAA LGPSQPNPNLNLG VGL+PG
Sbjct: 340 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPG 399
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
SAGGLDGPDRIFVGG+PYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 400 SAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 459
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
AVTDIACAALNGIKMGDKTLTVRRANQ NP QPKPEQESILMHAQQQIALQKLMLQPAL
Sbjct: 460 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 519
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGK 559
VATKV+CLTHAVS DELK+DEDYEEILDDMRQECSKFG LVNVVIPRP PDGE PGVGK
Sbjct: 520 VATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGK 579
Query: 560 VFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQG 600
VFLEY DVDG+TKAR+GLNGRKFGGNQVIAVFY ENKFAQG
Sbjct: 580 VFLEYADVDGSTKARSGLNGRKFGGNQVIAVFYPENKFAQG 620
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/415 (86%), Positives = 377/415 (90%), Gaps = 3/415 (0%)
Query: 186 EHXXXXXXXXXXXXTSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQM 245
EH SGFD+APPAS MLAG +AVTGQI NPAI G+ PNMFP+ +QM
Sbjct: 159 EHGTRSRSRSKSKRVSGFDLAPPAS-MLAGPAAVTGQITVPNPAISGVLPNMFPMGANQM 217
Query: 246 QPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDA 305
FSALP+MP+QAMTQQATRHARRVYVGGLPPTANEQSVA FFSQVMA IGGNTAGPGDA
Sbjct: 218 PQFSALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDA 277
Query: 306 VVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQP 365
VVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQP
Sbjct: 278 VVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQP 337
Query: 366 NPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRET 425
NPNLNLGAVGLTPGSAGGL+GPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRET
Sbjct: 338 NPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRET 397
Query: 426 GNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQ 485
GNSKGYAFCVY DLAVTDIACAALNGIKMGDKTLTVRRANQG QPKPEQESILMHAQ
Sbjct: 398 GNSKGYAFCVYADLAVTDIACAALNGIKMGDKTLTVRRANQGTT--QPKPEQESILMHAQ 455
Query: 486 QQIALQKLMLQPALVATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIP 545
QQIALQKL+ QPALVATKVVCLT+AV+ +ELKEDED+EEI+DDMRQECSKFG+LVNVVIP
Sbjct: 456 QQIALQKLIFQPALVATKVVCLTNAVAPEELKEDEDFEEIIDDMRQECSKFGSLVNVVIP 515
Query: 546 RPPPDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQG 600
RP PDG+ GVGKVFLEYVD++GATKAR GLNGRKFGGN+VIAVFYSENKFAQG
Sbjct: 516 RPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYSENKFAQG 570
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/363 (91%), Positives = 343/363 (94%), Gaps = 1/363 (0%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPP SA+L GA+ V GQI GA+PAIPGMFPNMFPL T+Q+QPFSALPV+PVQAM
Sbjct: 223 TSGFDMAPPTSAIL-GATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAM 281
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGL PTANEQSVATFFSQVMA IGGNTAGPGDAVVNVYINHDKKFAF
Sbjct: 282 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAF 341
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAA LGPSQPNPNLNLG VGL+PG
Sbjct: 342 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPG 401
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
SAGGLDGPDRIFVGG+PYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 402 SAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
AVTDIACAALNGIKMGDKTLTVRRANQ NP QPKPEQESILMHAQQQIALQKLMLQPAL
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 521
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGK 559
VATKV+CLTHAVS DELK+DEDYEEILDDMRQECSKFG LVNVVIPRP PDGE PGVGK
Sbjct: 522 VATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGK 581
Query: 560 VFL 562
+
Sbjct: 582 EIM 584
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/361 (92%), Positives = 343/361 (95%), Gaps = 1/361 (0%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPP SA+L GA+ V GQI GA+PAIPGMFPNMFPL T+Q+QPFSALPV+PVQAM
Sbjct: 223 TSGFDMAPPTSAIL-GATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAM 281
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGL PTANEQSVATFFSQVMA IGGNTAGPGDAVVNVYINHDKKFAF
Sbjct: 282 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAF 341
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAA LGPSQPNPNLNLG VGL+PG
Sbjct: 342 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPG 401
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
SAGGLDGPDRIFVGG+PYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 402 SAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
AVTDIACAALNGIKMGDKTLTVRRANQ NP QPKPEQESILMHAQQQIALQKLMLQPAL
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 521
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGK 559
VATKV+CLTHAVS DELK+DEDYEEILDDMRQECSKFG LVNVVIPRP PDGE PGVGK
Sbjct: 522 VATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGK 581
Query: 560 V 560
V
Sbjct: 582 V 582
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/363 (91%), Positives = 341/363 (93%), Gaps = 3/363 (0%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPP SA+L GA+ V GQI GA+PAIPGMFPNMFPL T+Q PFSALPV+PVQAM
Sbjct: 223 TSGFDMAPPTSAIL-GATGVAGQITGASPAIPGMFPNMFPLPTNQ--PFSALPVLPVQAM 279
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGL PTANEQSVATFFSQVMA IGGNTAGPGDAVVNVYINHDKKFAF
Sbjct: 280 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAF 339
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAA LGPSQPNPNLNLG VGL+PG
Sbjct: 340 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPG 399
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
SAGGLDGPDRIFVGG+PYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 400 SAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 459
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
AVTDIACAALNGIKMGDKTLTVRRANQ NP QPKPEQESILMHAQQQIALQKLMLQPAL
Sbjct: 460 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 519
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGK 559
VATKV+CLTHAVS DELK+DEDYEEILDDMRQECSKFG LVNVVIPRP PDGE PGVGK
Sbjct: 520 VATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGK 579
Query: 560 VFL 562
+
Sbjct: 580 EIM 582
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/361 (91%), Positives = 341/361 (94%), Gaps = 3/361 (0%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPP SA+L GA+ V GQI GA+PAIPGMFPNMFPL T+Q PFSALPV+PVQAM
Sbjct: 223 TSGFDMAPPTSAIL-GATGVAGQITGASPAIPGMFPNMFPLPTNQ--PFSALPVLPVQAM 279
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGL PTANEQSVATFFSQVMA IGGNTAGPGDAVVNVYINHDKKFAF
Sbjct: 280 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAF 339
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAA LGPSQPNPNLNLG VGL+PG
Sbjct: 340 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPG 399
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
SAGGLDGPDRIFVGG+PYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 400 SAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 459
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
AVTDIACAALNGIKMGDKTLTVRRANQ NP QPKPEQESILMHAQQQIALQKLMLQPAL
Sbjct: 460 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 519
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGK 559
VATKV+CLTHAVS DELK+DEDYEEILDDMRQECSKFG LVNVVIPRP PDGE PGVGK
Sbjct: 520 VATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGK 579
Query: 560 V 560
V
Sbjct: 580 V 580
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/341 (92%), Positives = 325/341 (95%), Gaps = 1/341 (0%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPP SA+L GA+ V GQI GA+PAIPGMFPNMFPL T+Q+QPFSALPV+PVQAM
Sbjct: 223 TSGFDMAPPTSAIL-GATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAM 281
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGL PTANEQSVATFFSQVMA IGGNTAGPGDAVVNVYINHDKKFAF
Sbjct: 282 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAF 341
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAA LGPSQPNPNLNLG VGL+PG
Sbjct: 342 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPG 401
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
SAGGLDGPDRIFVGG+PYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 402 SAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
AVTDIACAALNGIKMGDKTLTVRRANQ NP QPKPEQESILMHAQQQIALQKLMLQPAL
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 521
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLV 540
VATKV+CLTHAVS DELK+DEDYEEILDDMRQECSKFG +
Sbjct: 522 VATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNIC 562
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 530 bits (1364), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/409 (65%), Positives = 312/409 (76%), Gaps = 20/409 (4%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPPA+ + V+GQ+PG I G N P SQ+ AL +M VQ M
Sbjct: 116 TSGFDMAPPATGV---TPTVSGQMPGIAHMIQGATQNFSPYGISQI---GALSLMQVQPM 169
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGLPP ANEQS+A+FFSQVM IGGN+AG GD+VVNVYINH+KKFAF
Sbjct: 170 TQQATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAF 229
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMR+VEEASNAMALDGI+FEG V+VRRPTDYNPSLAA LGP QP+ NLNL AVGL+ G
Sbjct: 230 VEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAG 289
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
+ GG +G DRIFVGGLPYYFTE Q+RELL+ FGPLR FD+V+D+ETGNSKGY FC+YQD
Sbjct: 290 TIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDP 349
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQ--- 496
AVTDIACAALNG+KMGDKTLTVRRA A KPE+++I AQQ IA+QK+ L+
Sbjct: 350 AVTDIACAALNGLKMGDKTLTVRRATVSA---HSKPEEDNIFARAQQHIAMQKIALEVVG 406
Query: 497 ---PAL-----VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPP 548
P + TKV+CLT AV+ ++L ++ +YEEIL+DMR EC KFGTLVNVVIPRP
Sbjct: 407 LNIPGVPTNDESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPN 466
Query: 549 PDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKF 597
P+GE G+GKVFLEY D A+ LNGRKFGG+ V A +Y E K+
Sbjct: 467 PNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPEEKY 515
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 519 bits (1337), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/404 (64%), Positives = 308/404 (76%), Gaps = 20/404 (4%)
Query: 205 MAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAMTQQAT 264
MAPPA+ + V+GQ+PG I G N P SQ+ AL +M VQ MTQQAT
Sbjct: 1 MAPPATGV---TPTVSGQMPGIAHMIQGATQNFSPYGISQI---GALSLMQVQPMTQQAT 54
Query: 265 RHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 324
RHARRVYVGGLPP ANEQS+A+FFSQVM IGGN+AG GD+VVNVYINH+KKFAFVEMR+
Sbjct: 55 RHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRT 114
Query: 325 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGL 384
VEEASNAMALDGI+FEG V+VRRPTDYNPSLAA LGP QP+ NLNL AVGL+ G+ GG
Sbjct: 115 VEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGA 174
Query: 385 DGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 444
+G DRIFVGGLPYYFTE Q+RELL+ FGPLR FD+V+D+ETGNSKGY FC+YQD AVTDI
Sbjct: 175 EGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDI 234
Query: 445 ACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQ------PA 498
ACAALNG+KMGDKTLTVRRA A+ KPE+++I AQQ IA+QK+ L+ P
Sbjct: 235 ACAALNGLKMGDKTLTVRRATVSAH---SKPEEDNIFARAQQHIAMQKIALEVVGLNIPG 291
Query: 499 LVA-----TKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQ 553
+ TKV+CLT AV+ ++L ++ +YEEIL+DMR EC KFGTLVNVVIPRP P+GE
Sbjct: 292 VPTNDESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPNPNGEL 351
Query: 554 LPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKF 597
G+GKVFLEY D A+ LNGRKFGG+ V A +Y E K+
Sbjct: 352 STGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPEEKY 395
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 507 bits (1306), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/409 (62%), Positives = 301/409 (73%), Gaps = 35/409 (8%)
Query: 200 TSGFDMAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
TSGFDMAPPA+ + V+GQ+PG I G N P SQ
Sbjct: 116 TSGFDMAPPATGV---TPTVSGQMPGIAHMIQGATQNFSPYGISQ--------------- 157
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
ATRHARRVYVGGLPP ANEQS+A+FFSQVM IGGN+AG GD+VVNVYINH+KKFAF
Sbjct: 158 ---ATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAF 214
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMR+VEEASNAMALDGI+FEG V+VRRPTDYNPSLAA LGP QP+ NLNL AVGL+ G
Sbjct: 215 VEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAG 274
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
+ GG +G DRIFVGGLPYYFTE Q+RELL+ FGPLR FD+V+D+ETGNSKGY FC+YQD
Sbjct: 275 TIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDP 334
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQ--- 496
AVTDIACAALNG+KMGDKTLTVRRA A KPE+++I AQQ IA+QK+ L+
Sbjct: 335 AVTDIACAALNGLKMGDKTLTVRRATVSA---HSKPEEDNIFARAQQHIAMQKIALEVVG 391
Query: 497 ---PALVA-----TKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPP 548
P + TKV+CLT AV+ ++L ++ +YEEIL+DMR EC KFGTLVNVVIPRP
Sbjct: 392 LNIPGVPTNDESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPN 451
Query: 549 PDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKF 597
P+GE G+GKVFLEY D A+ LNGRKFGG+ V A +Y E K+
Sbjct: 452 PNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPEEKY 500
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 499 bits (1286), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/355 (68%), Positives = 283/355 (79%), Gaps = 14/355 (3%)
Query: 254 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINH 313
M VQ MTQQATRHARRVYVGGLPP ANEQS+A+FFSQVM IGGN+AG GD+VVNVYINH
Sbjct: 1 MQVQPMTQQATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINH 60
Query: 314 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGA 373
+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNPSLAA LGP QP+ NLNL A
Sbjct: 61 EKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSA 120
Query: 374 VGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAF 433
VGL+ G+ GG +G DRIFVGGLPYYFTE Q+RELL+ FGPLR FD+V+D+ETGNSKGY F
Sbjct: 121 VGLSAGTIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGF 180
Query: 434 CVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKL 493
C+YQD AVTDIACAALNG+KMGDKTLTVRRA A+ KPE+++I AQQ IA+QK+
Sbjct: 181 CIYQDPAVTDIACAALNGLKMGDKTLTVRRATVSAH---SKPEEDNIFARAQQHIAMQKI 237
Query: 494 MLQPALVA-----------TKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNV 542
L+ + TKV+CLT AV+ ++L ++ +YEEIL+DMR EC KFGTLVNV
Sbjct: 238 ALEVVGLNIPGVPTNDESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNV 297
Query: 543 VIPRPPPDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKF 597
VIPRP P+GE G+GKVFLEY D A+ LNGRKFGG+ V A +Y E K+
Sbjct: 298 VIPRPNPNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPEEKY 352
>Medtr1g041735.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15687990-15676413 | 20130731
Length = 951
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 177/360 (49%), Gaps = 42/360 (11%)
Query: 200 TSGFDMAPPA--SAM--LAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMP 255
+SGF+++ + S+M LA A+++ NP+I P F A S + + +
Sbjct: 395 SSGFELSNHSVLSSMHDLAAATSL-------NPSIVKPLPVSFFNAVSTGKNAN---IDS 444
Query: 256 VQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDK 315
VQ QATR RRVY+ LP +A+E+ V F+ ++ G N ++ ++ D+
Sbjct: 445 VQLT--QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDR 502
Query: 316 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVG 375
A VE + E+AS A++ DG G+ VK++RP DY +P ++ + A
Sbjct: 503 GQALVEFLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT- 556
Query: 376 LTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCV 435
S +D P +IF+GG+ + + + E+ FG L+ + G+ AF
Sbjct: 557 ---ISDVVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVE 610
Query: 436 YQDLAVTDIACAALNGIKMGDKTLTVRRANQGANP--QQPKPEQESILMHAQQQIALQKL 493
Y D +VT ACA LNG+ +G + LTV +A A+P KP I HA+ L
Sbjct: 611 YVDHSVTIKACAGLNGMNLGGEVLTVVQAMPDASPVENDSKPPSYGIPEHAEP------L 664
Query: 494 MLQPALVATKVVCLTHAVSADELKEDED--YEEILDDMRQECSKFGTLVNVVIPRPPPDG 551
+ +P T+V+ + + + + L D EEIL+D+R EC++FGT+ ++ + R D
Sbjct: 665 LREP----TQVLEIKNVFTVESLSSLSDTVIEEILEDVRLECARFGTVKSIHVARHCKDN 720
>Medtr1g041735.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15688028-15676480 | 20130731
Length = 1071
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 177/360 (49%), Gaps = 42/360 (11%)
Query: 200 TSGFDMAPPA--SAM--LAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMP 255
+SGF+++ + S+M LA A+++ NP+I P F A S + + +
Sbjct: 515 SSGFELSNHSVLSSMHDLAAATSL-------NPSIVKPLPVSFFNAVSTGKNAN---IDS 564
Query: 256 VQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDK 315
VQ QATR RRVY+ LP +A+E+ V F+ ++ G N ++ ++ D+
Sbjct: 565 VQLT--QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDR 622
Query: 316 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVG 375
A VE + E+AS A++ DG G+ VK++RP DY +P ++ + A
Sbjct: 623 GQALVEFLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT- 676
Query: 376 LTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCV 435
S +D P +IF+GG+ + + + E+ FG L+ + G+ AF
Sbjct: 677 ---ISDVVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVE 730
Query: 436 YQDLAVTDIACAALNGIKMGDKTLTVRRANQGANP--QQPKPEQESILMHAQQQIALQKL 493
Y D +VT ACA LNG+ +G + LTV +A A+P KP I HA+ L
Sbjct: 731 YVDHSVTIKACAGLNGMNLGGEVLTVVQAMPDASPVENDSKPPSYGIPEHAEP------L 784
Query: 494 MLQPALVATKVVCLTHAVSADELKEDED--YEEILDDMRQECSKFGTLVNVVIPRPPPDG 551
+ +P T+V+ + + + + L D EEIL+D+R EC++FGT+ ++ + R D
Sbjct: 785 LREP----TQVLEIKNVFTVESLSSLSDTVIEEILEDVRLECARFGTVKSIHVARHCKDN 840
>Medtr1g041735.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15687988-15676358 | 20130731
Length = 1109
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 177/360 (49%), Gaps = 42/360 (11%)
Query: 200 TSGFDMAPPA--SAM--LAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMP 255
+SGF+++ + S+M LA A+++ NP+I P F A S + + +
Sbjct: 553 SSGFELSNHSVLSSMHDLAAATSL-------NPSIVKPLPVSFFNAVSTGKNAN---IDS 602
Query: 256 VQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDK 315
VQ QATR RRVY+ LP +A+E+ V F+ ++ G N ++ ++ D+
Sbjct: 603 VQLT--QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDR 660
Query: 316 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVG 375
A VE + E+AS A++ DG G+ VK++RP DY +P ++ + A
Sbjct: 661 GQALVEFLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT- 714
Query: 376 LTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCV 435
S +D P +IF+GG+ + + + E+ FG L+ + G+ AF
Sbjct: 715 ---ISDVVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVE 768
Query: 436 YQDLAVTDIACAALNGIKMGDKTLTVRRANQGANP--QQPKPEQESILMHAQQQIALQKL 493
Y D +VT ACA LNG+ +G + LTV +A A+P KP I HA+ L
Sbjct: 769 YVDHSVTIKACAGLNGMNLGGEVLTVVQAMPDASPVENDSKPPSYGIPEHAEP------L 822
Query: 494 MLQPALVATKVVCLTHAVSADELKEDED--YEEILDDMRQECSKFGTLVNVVIPRPPPDG 551
+ +P T+V+ + + + + L D EEIL+D+R EC++FGT+ ++ + R D
Sbjct: 823 LREP----TQVLEIKNVFTVESLSSLSDTVIEEILEDVRLECARFGTVKSIHVARHCKDN 878
>Medtr1g041735.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:15687988-15678303 | 20130731
Length = 836
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 142/292 (48%), Gaps = 30/292 (10%)
Query: 200 TSGFDMAPPA--SAM--LAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMP 255
+SGF+++ + S+M LA A+++ NP+I P F A S + + +
Sbjct: 553 SSGFELSNHSVLSSMHDLAAATSL-------NPSIVKPLPVSFFNAVSTGKNAN---IDS 602
Query: 256 VQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDK 315
VQ QATR RRVY+ LP +A+E+ V F+ ++ G N ++ ++ D+
Sbjct: 603 VQLT--QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDR 660
Query: 316 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVG 375
A VE + E+AS A++ DG G+ VK++RP DY +P ++ + A
Sbjct: 661 GQALVEFLTAEDASAALSFDGSKLFGSTVKIKRPKDY-----VEFATDEPERSVEVAAT- 714
Query: 376 LTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCV 435
S +D P +IF+GG+ + + + E+ FG L+ + G+ AF
Sbjct: 715 ---ISDVVVDSPYKIFIGGISNHISSEMLMEIAGVFGFLKAYHFEARVSNGSC---AFVE 768
Query: 436 YQDLAVTDIACAALNGIKMGDKTLTVRRANQGANP--QQPKPEQESILMHAQ 485
Y D +VT ACA LNG+ +G + LTV +A A+P KP I HA+
Sbjct: 769 YVDHSVTIKACAGLNGMNLGGEVLTVVQAMPDASPVENDSKPPSYGIPEHAE 820
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+FVG +PY TE Q++E+ GP+ F LV DRETG KGY FC Y D A L
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 450 NGIKMGDKTLTV 461
G ++ + L V
Sbjct: 91 QGYEINGRQLRV 102
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 48/202 (23%)
Query: 271 YVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYI------NHDKKFAFVEMRS 324
YVG L P +E+ + F Q AGP VVNVY+ N + + FVE RS
Sbjct: 28 YVGNLDPQISEELLWELFVQ---------AGP---VVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 325 VEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGG 383
E+A A+ L+ I G P++V + SQ +L++GA
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKA-------------SQDKKSLDVGA---------- 112
Query: 384 LDGPDRIFVGGLPYYFTETQIRELLETFGPL-RGFDLVKDRETGNSKGYAFCVYQDLAVT 442
+F+G L E + + FG + +++D +TGNS+G+ F Y +
Sbjct: 113 -----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEAS 167
Query: 443 DIACAALNGIKMGDKTLTVRRA 464
D A A+NG + ++ +TV A
Sbjct: 168 DSAIEAMNGQYLCNRQITVSYA 189
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 259 MTQQA-TRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKF 317
+ Q+A + +RR++VG LP + + +A F + GN + + + N + F
Sbjct: 98 LNQEAESTQSRRLFVGNLPFSLSSSQLAQLFGE-----AGNVVSV-EILYDDITNRSRGF 151
Query: 318 AFVEMRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGL 376
AFV M +VE+A A+ + DG G +KV P +G V +
Sbjct: 152 AFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPE------VPIVGKR----------VQM 195
Query: 377 TPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVY 436
G +D P +I+ G L + T +R+ L +V +R G S+GY F +
Sbjct: 196 GSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSF 255
Query: 437 QDLAVTDIACAALNGIKMGDKTLTVRRANQGANP 470
+ ++A +A+NG+++ + L ++ A P
Sbjct: 256 ETAEDVEVALSAMNGVEVQGRPLRLKLAVDNRKP 289
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 259 MTQQA-TRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKF 317
+ Q+A + +RR++VG LP + + +A F + GN + + + N + F
Sbjct: 98 LNQEAESTQSRRLFVGNLPFSLSSSQLAQLFGE-----AGNVVSV-EILYDDITNRSRGF 151
Query: 318 AFVEMRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGL 376
AFV M +VE+A A+ + DG G +KV P +G V +
Sbjct: 152 AFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPE------VPIVGKR----------VQM 195
Query: 377 TPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVY 436
G +D P +I+ G L + T +R+ L +V +R G S+GY F +
Sbjct: 196 GSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSF 255
Query: 437 QDLAVTDIACAALNGIKMGDKTLTVRRANQGANP 470
+ ++A +A+NG+++ + L ++ A P
Sbjct: 256 ETAEDVEVALSAMNGVEVQGRPLRLKLAVDNRKP 289
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 21/243 (8%)
Query: 240 LATSQMQPFSALPVMPVQAMTQQATRH--ARRVYVGGLPPTANEQSVATFFSQVMAKIGG 297
+ + Q +P P Q Q+ T A R+YVG LP + +A F++
Sbjct: 79 IISQQQEPEPETSDKPKQDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAE------A 132
Query: 298 NTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSL 356
T + V + + + FAFV M+S EEA A+ + DG G KV P
Sbjct: 133 GTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGE 192
Query: 357 AATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRG 416
+G N G +D P +I+ G L + +R+ + L G
Sbjct: 193 RLVMGQKVRN------------SYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLG 240
Query: 417 FDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPE 476
++ +R+ G S+G+ F ++ + A A+NG+++ + L + A +P P E
Sbjct: 241 AKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAAARTSPSPPVIE 300
Query: 477 QES 479
+ +
Sbjct: 301 ENT 303
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 265 RHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 324
R R V+ +P A E+ V FFS+ +++ K ++E
Sbjct: 212 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 265
Query: 325 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGL 384
A+AL G + G PV V+ P++ +L + N GA G+ G G +
Sbjct: 266 AMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS--------NTTTGAAGVV-GPYGAV 315
Query: 385 DGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 444
D +++VG L + TE+Q+RE+ E FG + L D ETG+ KG+ F + +
Sbjct: 316 DR--KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK- 372
Query: 445 ACAALNG-IKMGDKTLTV 461
A +LNG +++ +T+ V
Sbjct: 373 AAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 265 RHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 324
R R V+ +P A E+ V FFS+ +++ K ++E
Sbjct: 212 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 265
Query: 325 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGL 384
A+AL G + G PV V+ P++ +L + N GA G+ G G +
Sbjct: 266 AMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS--------NTTTGAAGVV-GPYGAV 315
Query: 385 DGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 444
D +++VG L + TE+Q+RE+ E FG + L D ETG+ KG+ F + +
Sbjct: 316 DR--KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK- 372
Query: 445 ACAALNG-IKMGDKTLTV 461
A +LNG +++ +T+ V
Sbjct: 373 AAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 265 RHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 324
R R V+ +P A E+ V FFS+ +++ K ++E
Sbjct: 212 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 265
Query: 325 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGL 384
A+AL G + G PV V+ P++ +L + N GA G+ G G +
Sbjct: 266 AMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS--------NTTTGAAGVV-GPYGAV 315
Query: 385 DGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 444
D +++VG L + TE+Q+RE+ E FG + L D ETG+ KG+ F + +
Sbjct: 316 DR--KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK- 372
Query: 445 ACAALNG-IKMGDKTLTV 461
A +LNG +++ +T+ V
Sbjct: 373 AAQSLNGKLEIAGRTIKV 390
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+FVGG+P+ FTE + + +G + +LV+D+ TG SKG+AF Y+D T++A L
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 450 NGIKMGDKTLTV 461
NG ++ + + V
Sbjct: 98 NGAQVSGRIIRV 109
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 52/211 (24%)
Query: 269 RVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 328
+++VG LP + + +A F Q T + + N + + F FV M + EE
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQ------SGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEV 176
Query: 329 SNAM------ALDGIIF-------EGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVG 375
A+ LDG + G P ++R+P +N L
Sbjct: 177 ERAVNKFSGFELDGRLLTVNKAAPRGTP-RLRQPRTFNSGL------------------- 216
Query: 376 LTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCV 435
R +VG LP+ + + +L G + +V DRETG S+G+ F
Sbjct: 217 -------------RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVT 263
Query: 436 YQDLAVTDIACAALNGIKMGDKTLTVRRANQ 466
+ A + A AAL+G + + V A +
Sbjct: 264 MSNEAEMNDAIAALDGQSFNGRAIRVNVAEE 294
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+F+GGLP ++ +REL E G + L+KDRETG SKGYAF Y+ V A +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 450 NGIKMGDKTL 459
+ + KTL
Sbjct: 166 HNKEFKGKTL 175
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+F+GGLP ++ +REL E G + L+KDRETG SKGYAF Y+ V A +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 450 NGIKMGDKTL 459
+ + KTL
Sbjct: 166 HNKEFKGKTL 175
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+F+GGLP ++ +REL E G + L+KDRETG SKGYAF Y+ V A +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 450 NGIKMGDKTL 459
+ + KTL
Sbjct: 166 HNKEFKGKTL 175
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 27/201 (13%)
Query: 265 RHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 324
R R V+ +P A E+ V FFS+ +++ K ++E
Sbjct: 199 RDQRTVFAYQMPLKATERDVYEFFSK------AGKVRDVRLIMDRNSRRSKGVGYIEFYD 252
Query: 325 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNL---NLGAVGLTPGSA 381
A+AL G + G PV V+ PS+ NL N + G
Sbjct: 253 AMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNASSGAAVVGPY 298
Query: 382 GGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAV 441
G +D +++VG L + TE +RE+ E FG + L D ETG+ KG+ F + L
Sbjct: 299 GAVDR--KLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEH 356
Query: 442 TDIACAALNG-IKMGDKTLTV 461
A +LNG +++ +T+ V
Sbjct: 357 AK-AAQSLNGKLEIAGRTIKV 376
>Medtr4g083380.1 | DNA-damage-repair/toleration protein DRT111 | HC
| chr4:32450824-32455461 | 20130731
Length = 390
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVI-----PRPPPDGEQL 554
V T+V+ L + V E+ + E+ D++ EC+K+GT+ V+I P P D
Sbjct: 282 VPTRVLLLRNMVGPGEVDD-----ELEDEVGSECAKYGTVTRVLIFEITEPNFPTDE--- 333
Query: 555 PGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQ 599
++F+++ + TKA L+GR FGG V A FY E+KF++
Sbjct: 334 --AVRIFVQFERSEETTKALVDLDGRYFGGRTVRATFYDEDKFSK 376
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 29/196 (14%)
Query: 269 RVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 328
+++VG P + + +A F Q T + + N + + F FV M +VEEA
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQ------AGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEA 163
Query: 329 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLD 385
+A+ +G + G + V + P P P P L
Sbjct: 164 ESAVEKFNGYDYNGRSLVVNKASPKGSRPERTER-APRTFEPVL---------------- 206
Query: 386 GPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 445
RI+V L + +++ ++ G + +V DRETG S+G+ F D + A
Sbjct: 207 ---RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDA 263
Query: 446 CAALNGIKMGDKTLTV 461
AAL+G + +T+ V
Sbjct: 264 IAALDGQSLEGRTIRV 279
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 355 SLAATLGPSQPNPNL--NLGAVGLTPGSAGGLDGPDR------IFVGGLPYYFTETQIRE 406
+LA G S NP N G+ G TP + G + +++G LP + + +
Sbjct: 410 TLAIGSGSSGSNPPWANNSGSGGSTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQ 469
Query: 407 LLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQ 466
L + FG + ++KDR TG SKGY F Y D+ + + A A+NG ++ +T+ VR A +
Sbjct: 470 LFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGK 529
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 446
++F+GG+ + E ++RE T+G ++ ++KDR TG ++G+ F V+ D AV DI
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVV 64
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 446
++F+GG+ + E ++RE T+G ++ ++KDR TG ++G+ F V+ D AV DI
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVV 64
>Medtr1g078210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35008732-35001604 | 20130731
Length = 506
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 28/232 (12%)
Query: 378 PGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRG--------FDLVKDRETGNSK 429
P S L ++V GLP T ++ E +G ++ L D+ETG +K
Sbjct: 251 PDSWFELKVNTHVYVTGLPEDVTIDEVVETFSKYGIIKEDPETKKPRVKLYVDKETGRNK 310
Query: 430 GYAFCVYQDLAVTDIACAALNG--IKMGDKT-LTVRRAN-QGANPQQPKPEQESILMHAQ 485
G A Y +A L+G + GDK ++V A Q + + + +
Sbjct: 311 GDALVTYLKEPSVALAIQLLDGAPFRPGDKIPMSVSLAKFQQKGEKFVSKQVDKDNRRKK 370
Query: 486 QQIALQKLML-------QPALVATKVVCLTHAVSADELKEDED-YEEILDDMRQECSKFG 537
+ L+ ML L+ T VV L + S E++ DE+ + E+ +D+++EC+K G
Sbjct: 371 KTKKLEDKMLGWGGRDDSKVLIPTTVV-LRYMFSPAEMRADENLHSELEEDVKEECTKLG 429
Query: 538 TLVNVVIPRPPPDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIA 589
+ V + P G V +++ D GA +NGR FGG Q+ A
Sbjct: 430 PIDAVKVCDNHPQ-------GVVLVKFKDRKGAQACIELMNGRWFGGRQIHA 474
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
++F+GG+ Y E +RE +G + ++ DRETG S+G+ F + + A A
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 449 LNGIKMGDKTLTVRRANQ 466
L+G + + + V AN+
Sbjct: 103 LDGQDLHGRRVRVNYANE 120
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
++F+GG+ Y ET +RE +G + ++ DR+TG S+G+ F + A A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 449 LNGIKMGDKTLTVRRANQGANP 470
++ ++ +T+ V A + A P
Sbjct: 101 MDNKELDGRTVRVNYATERARP 122
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
++F+GG+ Y ET +RE +G + ++ DR+TG S+G+ F + A A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 449 LNGIKMGDKTLTVRRANQGANP 470
++ ++ +T+ V A + A P
Sbjct: 101 MDNKELDGRTVRVNYATERARP 122