Miyakogusa Predicted Gene

Lj3g3v1981160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1981160.1 tr|A4RTR8|A4RTR8_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,54.65,6e-19,RNA recognition motif,RNA recognition motif domain;
RRM,RNA recognition motif domain; SPLICING FACTO,TC76613.path1.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl...   157   2e-39
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl...   154   2e-38
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl...   154   2e-38
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl...   154   2e-38
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl...   154   2e-38
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl...   154   2e-38
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl...   152   5e-38
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl...   152   5e-38
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl...   134   2e-32
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl...   134   2e-32
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl...   133   3e-32
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl...   133   3e-32
Medtr1g041735.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    49   7e-07
Medtr1g041735.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    49   9e-07
Medtr1g041735.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    49   9e-07
Medtr1g041735.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    49   1e-06

>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr4:10777189-10770195 | 20130731
          Length = 574

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 78/86 (90%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSVA FFSQVMANIGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 234 QATRHARRVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVE 293

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 294 MRSVEEASNAMALDGIIFEGAPVKVR 319


>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr3:313745-308216 | 20130731
          Length = 564

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 284 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 343

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 344 MRSVEEASNAMALDGIIFEGAPVKVR 369


>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr3:313978-307107 | 20130731
          Length = 583

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 282 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 341

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 342 MRSVEEASNAMALDGIIFEGAPVKVR 367


>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr3:313978-307107 | 20130731
          Length = 624

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 282 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 341

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 342 MRSVEEASNAMALDGIIFEGAPVKVR 367


>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr3:313978-307107 | 20130731
          Length = 585

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 284 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 343

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 344 MRSVEEASNAMALDGIIFEGAPVKVR 369


>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr3:313978-307107 | 20130731
          Length = 626

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 284 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 343

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 344 MRSVEEASNAMALDGIIFEGAPVKVR 369


>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr3:313978-307107 | 20130731
          Length = 626

 Score =  152 bits (385), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 284 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 343

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 344 MRSVEEASNAMALDGIIFEGAPVKVR 369


>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr3:313978-307107 | 20130731
          Length = 624

 Score =  152 bits (385), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA IGGNTAGPGDAVVNV INHD  FAFVE
Sbjct: 282 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 341

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGIIFEGAPVKVR
Sbjct: 342 MRSVEEASNAMALDGIIFEGAPVKVR 367


>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr2:3477024-3485643 | 20130731
          Length = 402

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 73/86 (84%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPP ANEQS+A+FFSQVM  IGGN+AG GD+VVNV INH+  FAFVE
Sbjct: 52  QATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVE 111

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MR+VEEASNAMALDGI+FEG  V+VR
Sbjct: 112 MRTVEEASNAMALDGIVFEGVAVRVR 137


>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr2:3477024-3485643 | 20130731
          Length = 359

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 73/86 (84%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPP ANEQS+A+FFSQVM  IGGN+AG GD+VVNV INH+  FAFVE
Sbjct: 9   QATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVE 68

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MR+VEEASNAMALDGI+FEG  V+VR
Sbjct: 69  MRTVEEASNAMALDGIVFEGVAVRVR 94


>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr2:3475909-3485643 | 20130731
          Length = 507

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 73/86 (84%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPP ANEQS+A+FFSQVM  IGGN+AG GD+VVNV INH+  FAFVE
Sbjct: 157 QATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVE 216

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MR+VEEASNAMALDGI+FEG  V+VR
Sbjct: 217 MRTVEEASNAMALDGIVFEGVAVRVR 242


>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
           splicing factor | HC | chr2:3475903-3485643 | 20130731
          Length = 522

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 73/86 (84%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPP ANEQS+A+FFSQVM  IGGN+AG GD+VVNV INH+  FAFVE
Sbjct: 172 QATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVE 231

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MR+VEEASNAMALDGI+FEG  V+VR
Sbjct: 232 MRTVEEASNAMALDGIVFEGVAVRVR 257


>Medtr1g041735.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:15687988-15678303 | 20130731
          Length = 836

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATR  RRV +E+LP +A+E+ V   F+ ++ + G N        ++  ++ D   A VE
Sbjct: 607 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 666

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
             + E+AS A++ DG    G+ VK++
Sbjct: 667 FLTAEDASAALSFDGSKLFGSTVKIK 692


>Medtr1g041735.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:15687988-15676358 | 20130731
          Length = 1109

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATR  RRV +E+LP +A+E+ V   F+ ++ + G N        ++  ++ D   A VE
Sbjct: 607 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 666

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
             + E+AS A++ DG    G+ VK++
Sbjct: 667 FLTAEDASAALSFDGSKLFGSTVKIK 692


>Medtr1g041735.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:15688028-15676480 | 20130731
          Length = 1071

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATR  RRV +E+LP +A+E+ V   F+ ++ + G N        ++  ++ D   A VE
Sbjct: 569 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 628

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
             + E+AS A++ DG    G+ VK++
Sbjct: 629 FLTAEDASAALSFDGSKLFGSTVKIK 654


>Medtr1g041735.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:15687990-15676413 | 20130731
          Length = 951

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATR  RRV +E+LP +A+E+ V   F+ ++ + G N        ++  ++ D   A VE
Sbjct: 449 QATRPMRRVYLENLPASASEKVVMDCFNNLLLSSGVNHIQQTRPCISCIVHKDRGQALVE 508

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
             + E+AS A++ DG    G+ VK++
Sbjct: 509 FLTAEDASAALSFDGSKLFGSTVKIK 534